408 lines
56 KiB
XML
408 lines
56 KiB
XML
<document id="5ADB450D23984E205CA5595088C4D6E6" ID-DOI="10.5252/zoosystema2020v42a6" ID-GBIF-Dataset="69e88778-6ab9-44ad-bce0-bb84eb35391b" ID-ISSN="1638-9387" ID-Zenodo-Dep="3695831" ID-ZooBank="urn:lsid:zoobank.org:pub:C87A10FB-E817-4293-96FD-00C2EF82D371" IM.bibliography_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1583259932333" checkinUser="felipe" docAuthor="Theil, Emma Palacios & Felder, Darryl L." docDate="2020" docId="DE24878AF64AD6303215C6585EF2FDCC" docLanguage="en" docName="zoosystema42.6.85-103.pdf.imf" docOrigin="Zoosystema 42 (6)" docStyle="DocumentStyle:5CC576F744449C1860B4E72ABD884631.7:Zoosystema.2020-.journal_article" docStyleId="5CC576F744449C1860B4E72ABD884631" docStyleName="Zoosystema.2020-.journal_article" docStyleVersion="7" docTitle="Tubicolixa Theil & Felder 2020, n. gen." docType="treatment" docUuid="00ADBC20-FD16-4594-B5FB-A7DE037E3E8F" docUuidSource="ZooBank" docVersion="6" lastPageNumber="101" masterDocId="221DFFF2F65AD6223355C30D5C69FFBE" masterDocTitle="Phylogeny of the genus Pinnixa White, 1846 (Crustacea, Brachyura, Pinnotheridae) and allies inferred from mitochondrial and nuclear molecular markers, with generic reassignment of twenty-one species" masterLastPageNumber="103" masterPageNumber="85" pageNumber="99" updateTime="1698724363688" updateUser="plazi" zenodo-license-document="CC0-1.0" zenodo-license-figures="CC0-1.0" zenodo-license-treatments="UNSPECIFIED">
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<mods:title id="6EA2C8BFB7A996300E9DF7FD15658AC7">Phylogeny of the genus Pinnixa White, 1846 (Crustacea, Brachyura, Pinnotheridae) and allies inferred from mitochondrial and nuclear molecular markers, with generic reassignment of twenty-one species</mods:title>
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<mods:namePart id="C756EBDFB6A98E81429B99132C013571">Theil, Emma Palacios</mods:namePart>
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<mods:namePart id="241CAED3656D35A5460AEFA56374AC91">Felder, Darryl L.</mods:namePart>
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<mods:title id="7BDEE788B3DE6F644C934A0505886029">Zoosystema</mods:title>
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<mods:date id="E7C259ACD42B7D4FD8D861622BDCCE94">2020</mods:date>
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<mods:number id="B2B334F137806010EDD655E481DA08A4">2020-03-03</mods:number>
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<mods:identifier id="F96EC9DF940ECBDA8661266500117908" type="DOI">10.5252/zoosystema2020v42a6</mods:identifier>
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<treatment id="DE24878AF64AD6303215C6585EF2FDCC" ID-DOI="http://doi.org/10.5281/zenodo.3703636" ID-GBIF-Taxon="162382199" ID-Zenodo-Dep="3703636" LSID="urn:lsid:zoobank.org:act:00ADBC20-FD16-4594-B5FB-A7DE037E3E8F" httpUri="http://treatment.plazi.org/id/DE24878AF64AD6303215C6585EF2FDCC" lastPageId="18" lastPageNumber="101" pageId="16" pageNumber="99">
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<subSubSection id="1E976517F64AD6323215C6585E25FACE" box="[320,588,1365,1392]" pageId="16" pageNumber="99" type="nomenclature">
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<paragraph id="5632369CF64AD6323215C6585E25FACE" blockId="16.[320,588,1365,1392]" box="[320,588,1365,1392]" pageId="16" pageNumber="99">
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<heading id="0D7A81F0F64AD6323215C6585E25FACE" box="[320,588,1365,1392]" centered="true" fontSize="11" level="2" pageId="16" pageNumber="99" reason="2">
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Genus
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<taxonomicName id="918D4D1FF64AD63232D8C6585D93FAD1" ID-CoL="84GPH" authority="Theil & Felder, 2020" authorityName="Theil & Felder" authorityYear="2020" box="[397,506,1365,1391]" class="Malacostraca" family="Pinnotheridae" genus="Tubicolixa" kingdom="Animalia" order="Decapoda" pageId="16" pageNumber="99" phylum="Arthropoda" rank="genus" status="gen. nov.">
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<emphasis id="64F9EA8EF64AD63232D8C6585D93FAD1" box="[397,506,1365,1391]" italics="true" pageId="16" pageNumber="99">Tubicolixa</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="7FCA57F5F64AD6323154C65B5E25FACE" box="[513,588,1366,1392]" pageId="16" pageNumber="99" rank="genus">n. gen.</taxonomicNameLabel>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="1E976517F64AD63233C8C6AC5E87FA0D" box="[157,750,1441,1459]" pageId="16" pageNumber="99" type="description">
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<paragraph id="5632369CF64AD63233C8C6AC5E87FA0D" blockId="16.[157,750,1441,1459]" box="[157,750,1441,1459]" pageId="16" pageNumber="99">
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<uri id="221C3A9EF64AD63233C8C6AC5E87FA0D" box="[157,750,1441,1459]" pageId="16" pageNumber="99">
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urn:lsid:zoobank.org:act:
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<uuid id="222B0C49F64AD6323231C6AC5E87FA0D" box="[356,750,1441,1459]" pageId="16" pageNumber="99">00ADBC20-FD16-4594-B5FB-A7DE037E3E8F</uuid>
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</uri>
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</paragraph>
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</subSubSection>
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<subSubSection id="1E976517F64AD63233D1C6EF5C8FF9AB" pageId="16" pageNumber="99" type="materials_examined">
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<paragraph id="5632369CF64AD63233D1C6EF5C8FF9AB" blockId="16.[132,776,1506,1557]" pageId="16" pageNumber="99">
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<collectionCode id="309CAE59F64AD63233D1C6EF5C95FA46" box="[132,252,1506,1530]" pageId="16" pageNumber="99">
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<typeStatus id="8936883EF64AD63233D1C6EF5CDDFA49" box="[132,180,1506,1530]" pageId="16" pageNumber="99">TYPE</typeStatus>
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SPECIES
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</collectionCode>
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. —
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<taxonomicName id="918D4D1FF64AD6323270C6EF5EC6FA45" authority="(Stimpson, 1860)" authorityName="Theil & Felder" authorityYear="2020" baseAuthorityName="Stimpson" baseAuthorityYear="1860" box="[293,687,1506,1531]" class="Malacostraca" family="Pinnotheridae" genus="Tubicolixa" kingdom="Animalia" order="Decapoda" pageId="16" pageNumber="99" phylum="Arthropoda" rank="species" species="chaetopterana" status="comb. nov.">
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<emphasis id="64F9EA8EF64AD6323270C6EF5E6CFA44" box="[293,517,1506,1530]" italics="true" pageId="16" pageNumber="99">Tubicolixa chaetopterana</emphasis>
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(Stimpson, 1860)
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</taxonomicName>
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<taxonomicNameLabel id="7FCA57F5F64AD63231E1C6EE5F61FA45" box="[692,776,1507,1531]" pageId="16" pageNumber="99" rank="species">n. comb.</taxonomicNameLabel>
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[
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<taxonomicName id="918D4D1FF64AD63233D9C6F35CBEF9AB" authorityName=", Say" authorityYear="1818" box="[140,215,1534,1557]" class="Malacostraca" family="Pinnotheridae" genus="Pinnixa" kingdom="Animalia" order="Decapoda" pageId="16" pageNumber="99" phylum="Arthropoda" rank="genus">
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<emphasis id="64F9EA8EF64AD63233D9C6F35CBEF9AB" box="[140,215,1534,1557]" italics="true" pageId="16" pageNumber="99">Pinnixa</emphasis>
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</taxonomicName>
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].
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</paragraph>
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</subSubSection>
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<subSubSection id="1E976517F64AD63233D1C5365D2BF82F" pageId="16" pageNumber="99" type="diagnosis">
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<paragraph id="5632369CF64AD63233D1C5365D2BF82F" blockId="16.[132,775,1595,1937]" pageId="16" pageNumber="99">DIAGNOSIS. — Carapace uneven, regions clearly limited by depressions, some surfaces heavily pubescent, especially margins; cardiac region with transverse crest, not extending entirely across carapace; branchial regions with granulate or serrated edges. Third maxilliped with ischiomerus subtrapezoidal; propodus and dactylus longer than carpus, shorter than ischiomerus, elongate; dactylus inserting near base of propodus, reaching beyond end of propodus. Chelipeds strongly developed, setose, with shortened or deflexed fixed finger, in some cases sexual dimorphism. First two ambulatory legs (P2 and P3) slender, third and fourth (P4 and P5) stouter; relative lengths P4> P3> P2> P5. Male pleon tapering toward end, telson subsemicircular; first pleonal somite lacking gonopodal plate between gonopods.</paragraph>
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</subSubSection>
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<subSubSection id="1E976517F64AD63233D1C4B55F85FAC6" pageId="16" pageNumber="99" type="etymology">
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<paragraph id="5632369CF64AD63233D1C4B55F6EF854" blockId="16.[132,775,1976,2026]" pageId="16" pageNumber="99">
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ETYMOLOGY. — Named
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<taxonomicName id="918D4D1FF64AD6323220C4B55DB1F86E" authority="Theil & Felder, 2020" authorityName="Theil & Felder" authorityYear="2020" box="[373,472,1976,2000]" class="Malacostraca" family="Pinnotheridae" genus="Tubicolixa" kingdom="Animalia" order="Decapoda" pageId="16" pageNumber="100" phylum="Arthropoda" rank="genus" status="gen. nov.">
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<emphasis id="64F9EA8EF64AD6323220C4B55DB1F86E" box="[373,472,1976,2000]" italics="true" pageId="16" pageNumber="99">Tubicolixa</emphasis>
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</taxonomicName>
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in recognition of the group apparent preference for polychaete tubes as a habitat. Gender feminine.
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</paragraph>
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<paragraph id="5632369CF64AD6323078C6485F85FAC6" blockId="16.[813,1455,1349,1427]" pageId="16" pageNumber="99">
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ADDITIONAL SPECIES. —
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<taxonomicName id="918D4D1FF64AD632377FC64B59C6FAE0" authority="(Rathbun, 1898)" authorityName="Theil & Felder" authorityYear="2020" baseAuthorityName="Rathbun" baseAuthorityYear="1898" box="[1066,1455,1350,1374]" class="Malacostraca" family="Pinnotheridae" genus="Tubicolixa" kingdom="Animalia" order="Decapoda" pageId="16" pageNumber="99" phylum="Arthropoda" rank="species" species="brevipollex" status="comb. nov.">
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<emphasis id="64F9EA8EF64AD632377FC64B5894FAE0" box="[1066,1277,1350,1374]" italics="true" pageId="16" pageNumber="99">Tubicolixa brevipollex</emphasis>
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(
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<bibRefCitation id="321C4B6DF64AD6323659C64B59CEFAE0" author="Rathbun" box="[1292,1447,1350,1374]" firstAuthor="Rathbun" pageId="16" pageNumber="99" pagination="567 - 616" refId="ref18533" refString="RATHBUN M. J. 1898. - The Brachyura collected by the U. S. Fish Commission steamer Albatross on the voyage from Norfolk, Virgina, to San Francisco, California 1887 - 1888. Proceedings U. S. National Museum 21: 567 - 616, XLI-XLIV. https: // doi. org / 10.5479 / si. 00963801.21 - 1162.567" type="journal article" year="1898">Rathbun, 1898</bibRefCitation>
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)
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</taxonomicName>
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<taxonomicNameLabel id="7FCA57F5F64AD6323078C66C5FECFAC6" box="[813,901,1376,1400]" pageId="16" pageNumber="99" rank="species">n. comb.</taxonomicNameLabel>
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[
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<taxonomicName id="918D4D1FF64AD63230C7C66C5FB4FAC6" authorityName=", Say" authorityYear="1818" box="[914,989,1377,1400]" class="Malacostraca" family="Pinnotheridae" genus="Pinnixa" kingdom="Animalia" order="Decapoda" pageId="16" pageNumber="99" phylum="Arthropoda" rank="genus">
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<emphasis id="64F9EA8EF64AD63230C7C66C5FB4FAC6" box="[914,989,1377,1400]" italics="true" pageId="16" pageNumber="99">Pinnixa</emphasis>
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</taxonomicName>
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];
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</paragraph>
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</subSubSection>
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<subSubSection id="1E976517F64AD6323078C6765959FA2C" box="[813,1328,1403,1427]" pageId="16" pageNumber="99" type="description">
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<paragraph id="5632369CF64AD6323078C6765959FA2C" blockId="16.[813,1455,1349,1427]" box="[813,1328,1403,1427]" pageId="16" pageNumber="99">
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<taxonomicName id="918D4D1FF64AD6323078C6765802FA2D" authority="(Bouvier, 1917)" authorityName="Theil & Felder" authorityYear="2020" baseAuthorityName="Bouvier" baseAuthorityYear="1917" box="[813,1131,1403,1427]" class="Malacostraca" family="Pinnotheridae" genus="Tubicolixa" kingdom="Animalia" order="Decapoda" pageId="16" pageNumber="99" phylum="Arthropoda" rank="species" species="rapax" status="comb. nov.">
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<emphasis id="64F9EA8EF64AD6323078C6765FA3FA2C" box="[813,970,1403,1427]" italics="true" pageId="16" pageNumber="99">Tubicolixa rapax</emphasis>
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(Bouvier, 1917)
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</taxonomicName>
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<taxonomicNameLabel id="7FCA57F5F64AD6323724C67658A0FA2D" box="[1137,1225,1403,1427]" pageId="16" pageNumber="99" rank="species">n. comb.</taxonomicNameLabel>
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[
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<taxonomicName id="918D4D1FF64AD6323782C676594BFA2C" authorityName=", Say" authorityYear="1818" box="[1239,1314,1403,1426]" class="Malacostraca" family="Pinnotheridae" genus="Pinnixa" kingdom="Animalia" order="Decapoda" pageId="16" pageNumber="99" phylum="Arthropoda" rank="genus">
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<emphasis id="64F9EA8EF64AD6323782C676594BFA2C" box="[1239,1314,1403,1426]" italics="true" pageId="16" pageNumber="99">Pinnixa</emphasis>
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</taxonomicName>
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].
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</paragraph>
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</subSubSection>
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||
<subSubSection id="1E976517F64AD6323078C6A75895F8F1" pageId="16" pageNumber="99" type="materials_examined">
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<paragraph id="5632369CF64AD6323078C6A75FB9FA49" blockId="16.[813,1456,1450,1898]" pageId="16" pageNumber="99">
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||
MATERIAL EXAMINED. — In addition to the material included in the phylogenetic analyses (
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<tableCitation id="1B0F0327F64AD6323752C6C85824FA63" box="[1031,1101,1477,1501]" captionStart="TABLE" captionStartId="5.[132,143,221,239]" captionText="TABLE 1. — Pinnotherid specimens used in phylogenetic analyses of the genus Pinnixa White, 1846 s.l. and allies. Names shown are in accord with Pinnixa s.l. prior to revisions in present paper. See “Material and Methods” for museum abbreviations." httpUri="http://table.plazi.org/id/02F26614F65FD62733D1C3D05F1CFEB8" pageId="16" pageNumber="99" tableUuid="02F26614F65FD62733D1C3D05F1CFEB8">Table 1</tableCitation>
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) the following material was available for examination:
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</paragraph>
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<paragraph id="5632369CF64AD6323078C6F75895F8F1" blockId="16.[813,1456,1450,1898]" pageId="16" pageNumber="99">
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<materialsCitation id="E6E53CC1F64AD6323078C6F75F0EF992" ID-GBIF-Occurrence="2573304529" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="NC" country="United States of America" location="USA" pageId="16" pageNumber="89" specimenCode="ULLZ 12480" specimenCount="1">
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<taxonomicName id="918D4D1FF64AD6323078C6F7587DF9AC" authorityName="Theil & Felder" authorityYear="2020" baseAuthorityName="Stimpson" baseAuthorityYear="1860" box="[813,1044,1530,1554]" class="Malacostraca" family="Pinnotheridae" genus="Tubicolixa" kingdom="Animalia" order="Decapoda" pageId="16" pageNumber="99" phylum="Arthropoda" rank="species" species="chaetopterana" status="comb. nov.">
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<emphasis id="64F9EA8EF64AD6323078C6F7587DF9AC" box="[813,1044,1530,1554]" italics="true" pageId="16" pageNumber="99">Tubicolixa chaetopterana</emphasis>
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||
</taxonomicName>
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||
<taxonomicNameLabel id="7FCA57F5F64AD632374FC6F75819F9AC" box="[1050,1136,1530,1554]" pageId="16" pageNumber="99" rank="species">n. comb.</taxonomicNameLabel>
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||
<emphasis id="64F9EA8EF64AD6323721C6F758E4F9AF" box="[1140,1165,1530,1553]" italics="true" pageId="16" pageNumber="99">—</emphasis>
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<specimenCode id="062B9EE7F64AD63237C6C6F7597FF9AC" box="[1171,1302,1530,1554]" pageId="16" pageNumber="99">ULLZ 12480</specimenCode>
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||
(Beaufort,
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<collectionCode id="309CAE59F64AD63236D6C6F759C2F9AC" box="[1411,1451,1530,1554]" pageId="16" pageNumber="99">NC</collectionCode>
|
||
,
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<collectingCountry id="2E9A760CF64AD6323078C5195F09F992" box="[813,864,1556,1580]" name="United States of America" pageId="16" pageNumber="99">USA</collectingCountry>
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)
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</materialsCitation>
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,
|
||
<materialsCitation id="E6E53CC1F64AD6323024C51858FBF9C2" ID-GBIF-Occurrence="2573304557" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="FL" country="United States of America" location="USA" pageId="16" pageNumber="89" specimenCode="ULLZ 4452, ULLZ 4561, ULLZ 5553, ULLZ 6429, ULLZ 7395, ULLZ 7400, ULLZ 10286, ULLZ 14005, ULLZ 14008, ULLZ 14110, ULLZ 14907, ULLZ 14911, ULLZ 17925" specimenCount="1">
|
||
<specimenCode id="062B9EE7F64AD6323024C5185F83F992" box="[881,1002,1556,1580]" pageId="16" pageNumber="99">ULLZ 4452</specimenCode>
|
||
(2),
|
||
<specimenCode id="062B9EE7F64AD632374EC51858FCF992" box="[1051,1173,1556,1580]" pageId="16" pageNumber="99">ULLZ 4561</specimenCode>
|
||
(2),
|
||
<specimenCode id="062B9EE7F64AD6323793C5185956F992" box="[1222,1343,1556,1580]" pageId="16" pageNumber="99">ULLZ 5553</specimenCode>
|
||
(2),
|
||
<specimenCode id="062B9EE7F64AD6323625C5185F0BF9F8" pageId="16" pageNumber="99">ULLZ 6429</specimenCode>
|
||
,
|
||
<specimenCode id="062B9EE7F64AD632303EC5225F8CF9F8" box="[875,997,1582,1606]" pageId="16" pageNumber="99">ULLZ 7395</specimenCode>
|
||
,
|
||
<specimenCode id="062B9EE7F64AD63230BAC5225801F9F9" box="[1007,1128,1583,1607]" pageId="16" pageNumber="99">ULLZ 7400</specimenCode>
|
||
,
|
||
<specimenCode id="062B9EE7F64AD6323727C5225890F9F8" box="[1138,1273,1582,1606]" pageId="16" pageNumber="99">ULLZ 10286</specimenCode>
|
||
,
|
||
<specimenCode id="062B9EE7F64AD6323657C52259EFF9F8" box="[1282,1414,1582,1606]" pageId="16" pageNumber="99">ULLZ 14005</specimenCode>
|
||
(2),
|
||
<specimenCode id="062B9EE7F64AD6323078C5445FD8F9DF" box="[813,945,1609,1633]" pageId="16" pageNumber="99">ULLZ 14008</specimenCode>
|
||
(6),
|
||
<specimenCode id="062B9EE7F64AD63230B5C544580EF9DF" box="[992,1127,1609,1633]" pageId="16" pageNumber="99">ULLZ 14110</specimenCode>
|
||
,
|
||
<specimenCode id="062B9EE7F64AD6323724C544589CF9DF" box="[1137,1269,1609,1633]" pageId="16" pageNumber="99">ULLZ 14907</specimenCode>
|
||
(4),
|
||
<specimenCode id="062B9EE7F64AD6323671C54459C2F9DF" box="[1316,1451,1609,1633]" pageId="16" pageNumber="99">ULLZ 14911</specimenCode>
|
||
,
|
||
<specimenCode id="062B9EE7F64AD6323078C5695FD9F9C5" box="[813,944,1635,1659]" pageId="16" pageNumber="99">ULLZ 17925</specimenCode>
|
||
(Fort Pierce,
|
||
<collectionCode id="309CAE59F64AD6323764C5695826F9C5" box="[1073,1103,1636,1659]" pageId="16" pageNumber="99">FL</collectionCode>
|
||
,
|
||
<collectingCountry id="2E9A760CF64AD632370DC56958E2F9C2" box="[1112,1163,1636,1660]" name="United States of America" pageId="16" pageNumber="99">USA</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
,
|
||
<materialsCitation id="E6E53CC1F64AD63237CFC5695F0DF928" ID-GBIF-Occurrence="2573304573" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="FL" country="United States of America" location="USA" pageId="16" pageNumber="89" specimenCode="ULLZ 14916" specimenCount="1">
|
||
<specimenCode id="062B9EE7F64AD63237CFC5695974F9C5" box="[1178,1309,1635,1659]" pageId="16" pageNumber="99">ULLZ 14916</specimenCode>
|
||
(Peanut Is,
|
||
<collectionCode id="309CAE59F64AD63236D8C56959C2F9C5" box="[1421,1451,1636,1659]" pageId="16" pageNumber="99">FL</collectionCode>
|
||
,
|
||
<collectingCountry id="2E9A760CF64AD6323078C5735F37F928" box="[813,862,1662,1686]" name="United States of America" pageId="16" pageNumber="99">USA</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
,
|
||
<materialsCitation id="E6E53CC1F64AD6323039C57358D4F928" ID-GBIF-Occurrence="2573304559" box="[876,1213,1662,1686]" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="USA" country="United States of America" location="Florida" pageId="16" pageNumber="89" specimenCode="ULLZ 5542" specimenCount="1" stateProvince="Florida">
|
||
<specimenCode id="062B9EE7F64AD6323039C5735FB7F928" box="[876,990,1662,1686]" pageId="16" pageNumber="99">
|
||
<collectionCode id="309CAE59F64AD6323039C5735FC0F92B" box="[876,937,1662,1685]" collectionName="ULLZ" pageId="16" pageNumber="99">ULLZ</collectionCode>
|
||
5542
|
||
</specimenCode>
|
||
(7) (
|
||
<collectingRegion id="9449F87EF64AD632375DC5735825F928" box="[1032,1100,1662,1686]" country="United States of America" name="Florida" pageId="16" pageNumber="99">Florida</collectingRegion>
|
||
Keys,
|
||
<collectingCountry id="2E9A760CF64AD63237D3C57358DEF928" box="[1158,1207,1662,1686]" name="United States of America" pageId="16" pageNumber="99">
|
||
<collectionCode id="309CAE59F64AD63237D3C57358DEF928" box="[1158,1207,1662,1686]" pageId="16" pageNumber="99">USA</collectionCode>
|
||
</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
,
|
||
<materialsCitation id="E6E53CC1F64AD6323793C57358A5F90F" ID-GBIF-Occurrence="2573304540" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="FL" country="United States of America" location="USA" pageId="16" pageNumber="89" specimenCode="ULLZ 17456" specimenCount="1">
|
||
MNHN-IU-2017-9370,
|
||
<specimenCode id="062B9EE7F64AD6323078C5945FDDF90E" box="[813,948,1688,1712]" pageId="16" pageNumber="99">ULLZ 17456</specimenCode>
|
||
(2) (Tampa Bay,
|
||
<collectionCode id="309CAE59F64AD6323732C59458EFF90E" box="[1127,1158,1689,1712]" pageId="16" pageNumber="99">FL</collectionCode>
|
||
,
|
||
<collectingCountry id="2E9A760CF64AD63237C7C59458AFF90F" box="[1170,1222,1689,1713]" name="United States of America" pageId="16" pageNumber="99">USA</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
,
|
||
<materialsCitation id="E6E53CC1F64AD632378DC594582EF975" ID-GBIF-Occurrence="2573304541" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="FL" country="United States of America" location="USA" pageId="16" pageNumber="89" specimenCode="ULLZ 14080" specimenCount="1">
|
||
<specimenCode id="062B9EE7F64AD632378DC5945936F90F" box="[1240,1375,1689,1713]" pageId="16" pageNumber="99">ULLZ 14080</specimenCode>
|
||
(2) (St. Mark’s lighthouse,
|
||
<collectionCode id="309CAE59F64AD63230B0C5BE586AF974" box="[997,1027,1715,1738]" pageId="16" pageNumber="99">FL</collectionCode>
|
||
,
|
||
<collectingCountry id="2E9A760CF64AD6323759C5BE5856F975" box="[1036,1087,1715,1739]" name="United States of America" pageId="16" pageNumber="99">USA</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
,
|
||
<materialsCitation id="E6E53CC1F64AD6323705C5BE5838F95B" ID-GBIF-Occurrence="2573304537" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="FL" country="United States of America" location="USA" pageId="16" pageNumber="89" specimenCode="ULLZ 14996, ULLZ 14997" specimenCount="1">
|
||
<specimenCode id="062B9EE7F64AD6323705C5BE58BEF975" box="[1104,1239,1715,1739]" pageId="16" pageNumber="99">ULLZ 14996</specimenCode>
|
||
,
|
||
<specimenCode id="062B9EE7F64AD63237B5C5BE590DF975" box="[1248,1380,1715,1739]" pageId="16" pageNumber="99">ULLZ 14997</specimenCode>
|
||
(2) (St. Joseph’s State Park,
|
||
<collectionCode id="309CAE59F64AD63230BBC5C35865F95B" box="[1006,1036,1742,1765]" pageId="16" pageNumber="99">FL</collectionCode>
|
||
,
|
||
<collectingCountry id="2E9A760CF64AD6323742C5C05823F95B" box="[1047,1098,1741,1765]" name="United States of America" pageId="16" pageNumber="99">USA</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
,
|
||
<materialsCitation id="E6E53CC1F64AD6323709C5C35854F8BE" ID-GBIF-Occurrence="2573304568" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="FL, USA" country="United States of America" pageId="16" pageNumber="89" specimenCode="ULLZ 8638, ULLZ 14875" specimenCount="1">
|
||
<specimenCode id="062B9EE7F64AD6323709C5C358BCF95B" box="[1116,1237,1741,1765]" pageId="16" pageNumber="99">ULLZ 8638</specimenCode>
|
||
(2),
|
||
<specimenCode id="062B9EE7F64AD6323653C5C359E2F95B" box="[1286,1419,1741,1765]" pageId="16" pageNumber="99">ULLZ 14875</specimenCode>
|
||
(3) (St. Andrew’s Bay,
|
||
<collectionCode id="309CAE59F64AD6323089C5E55F93F941" box="[988,1018,1768,1791]" pageId="16" pageNumber="99">FL</collectionCode>
|
||
,
|
||
<collectionCode id="309CAE59F64AD6323756C5E5585FF8BE" box="[1027,1078,1768,1792]" pageId="16" pageNumber="99">USA</collectionCode>
|
||
)
|
||
</materialsCitation>
|
||
,
|
||
<materialsCitation id="E6E53CC1F64AD6323710C5E55FFAF8A4" ID-GBIF-Occurrence="2573304539" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="FL, USA" country="United States of America" pageId="16" pageNumber="89" specimenCode="ULLZ 14024" specimenCount="1">
|
||
<specimenCode id="062B9EE7F64AD6323710C5E558AEF8BE" box="[1093,1223,1768,1792]" pageId="16" pageNumber="99">ULLZ 14024</specimenCode>
|
||
(2) (Perdido Key Beach,
|
||
<collectionCode id="309CAE59F64AD6323078C40E5F25F8A4" box="[813,844,1795,1818]" pageId="16" pageNumber="99">FL</collectionCode>
|
||
,
|
||
<collectionCode id="309CAE59F64AD632300DC40F5FE5F8A4" box="[856,908,1794,1818]" pageId="16" pageNumber="99">USA</collectionCode>
|
||
)
|
||
</materialsCitation>
|
||
,
|
||
<materialsCitation id="E6E53CC1F64AD63230CAC40E590AF8A4" ID-GBIF-Occurrence="2573304567" box="[927,1379,1794,1818]" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="USA" country="United States of America" location="Mississippi" pageId="16" pageNumber="89" specimenCode="ULLZ 8657" specimenCount="1" stateProvince="Mississippi">
|
||
<specimenCode id="062B9EE7F64AD63230CAC40E5875F8A4" box="[927,1052,1794,1818]" pageId="16" pageNumber="99">
|
||
<collectionCode id="309CAE59F64AD63230CAC40E5FB6F8A4" box="[927,991,1795,1818]" collectionName="ULLZ" pageId="16" pageNumber="99">ULLZ</collectionCode>
|
||
8657
|
||
</specimenCode>
|
||
(7) (offshore
|
||
<collectingRegion id="9449F87EF64AD63237FFC40F5972F8A4" box="[1194,1307,1794,1818]" country="United States of America" name="Mississippi" pageId="16" pageNumber="99">Mississippi</collectingRegion>
|
||
,
|
||
<collectingCountry id="2E9A760CF64AD6323672C40F5932F8A4" box="[1319,1371,1794,1818]" name="United States of America" pageId="16" pageNumber="99">
|
||
<collectionCode id="309CAE59F64AD6323672C40F5932F8A4" box="[1319,1371,1794,1818]" pageId="16" pageNumber="99">USA</collectionCode>
|
||
</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
,
|
||
<materialsCitation id="E6E53CC1F64AD632363AC40E58E1F88B" ID-GBIF-Occurrence="2573304549" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="LA" country="United States of America" location="USA" pageId="16" pageNumber="89" specimenCode="ULLZ 5552" specimenCount="1">
|
||
<specimenCode id="062B9EE7F64AD632363AC40E5F09F88B" pageId="16" pageNumber="99">ULLZ 5552</specimenCode>
|
||
(2) (Isles Dernieres,
|
||
<collectionCode id="309CAE59F64AD6323771C410582CF88B" box="[1060,1093,1821,1845]" pageId="16" pageNumber="99">LA</collectionCode>
|
||
,
|
||
<collectingCountry id="2E9A760CF64AD632371BC41058E8F88B" box="[1102,1153,1821,1845]" name="United States of America" pageId="16" pageNumber="99">USA</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
,
|
||
<materialsCitation id="E6E53CC1F64AD63237C5C4105F31F8F1" ID-GBIF-Occurrence="2573304569" collectionCode="TX" country="United States of America" location="Bryan Mound" pageId="16" pageNumber="99" specimenCode="ULLZ 14832" specimenCount="1">
|
||
<specimenCode id="062B9EE7F64AD63237C5C410597AF88B" box="[1168,1299,1821,1845]" pageId="16" pageNumber="99">
|
||
<collectionCode id="309CAE59F64AD63237C5C41058A6F88A" box="[1168,1231,1821,1844]" collectionName="ULLZ" pageId="16" pageNumber="99">ULLZ</collectionCode>
|
||
14832
|
||
</specimenCode>
|
||
(
|
||
<location id="53526047F64AD632364BC41059C5F88B" LSID="urn:lsid:plazi:treatment:DE24878AF64AD6303215C6585EF2FDCC:53526047F64AD632364BC41059C5F88B" box="[1310,1452,1821,1845]" country="United States of America" name="Bryan Mound" pageId="16" pageNumber="99">Bryan Mound</location>
|
||
,
|
||
<collectionCode id="309CAE59F64AD6323078C43A5F3BF8F1" box="[813,850,1847,1871]" pageId="16" pageNumber="99">TX</collectionCode>
|
||
)
|
||
</materialsCitation>
|
||
,
|
||
<materialsCitation id="E6E53CC1F64AD6323036C4355891F8F1" ID-GBIF-Occurrence="2573304563" box="[867,1272,1847,1871]" collectingLocationText="or DreamTaqTM Green DNA Polymerase, Fermentas, currently ThermoFisher Scientific, Waltham, MA, USA) in a Stratagene® Robocycler® Gradient 96 (Santa Clara, CA, USA). Three fragments were targeted: 1) a mitochondrial complex of about 830 bp consisting of part of the 16S rRNA gene, the tRNA-Leu, and part of the gene for NADH dehydrogenase subunit 1 (NADH1), 2) part of the mitochondrial 12S rRNA gene, and 3) part of the nuclear histone subunit 3 gene. These genes represent a diverse group of mitochondrial protein- or RNA-coding genes, as well as a nuclear protein-coding gene. They have been previously shown to be informative and have an adequate resolution to solve phylogenetic relationships between and among species and genera within Pinnotheridae (Palacios Theil et al. 2016; Tsang et al. 2018). In addition, they have proved to be obtained with relative ease using the primers indicated in Table 2, which shows also the length of the fragments obtained with each primer combination. PCR products were either sent to be purified and sequenced by Beckman Coulter Genomics (Danvers, MA, USA) or purified using SureClean (Bioline, Taunton, MA, USA), resuspended in water, sequenced with the ABI BigDye terminator mix, sequencing products being run on a 3100 Applied Biosystems (Foster City, CA, USA) automated sequencer." collectionCode="TX, USA" country="Iceland" location="Island" pageId="16" pageNumber="89" specimenCode="ULLZ 2597" specimenCount="1">
|
||
<specimenCode id="062B9EE7F64AD6323036C4355FB2F8F1" box="[867,987,1847,1871]" pageId="16" pageNumber="99">
|
||
<collectionCode id="309CAE59F64AD6323036C4355FCBF8F1" box="[867,930,1848,1871]" collectionName="ULLZ" pageId="16" pageNumber="99">ULLZ</collectionCode>
|
||
2597
|
||
</specimenCode>
|
||
(3) (Padre
|
||
<collectingCountry id="2E9A760CF64AD632371CC43A58EEF8F1" box="[1097,1159,1847,1871]" name="Iceland" pageId="16" pageNumber="99" value="Iceland">Island</collectingCountry>
|
||
,
|
||
<collectionCode id="309CAE59F64AD63237C5C43558DDF8F1" box="[1168,1204,1848,1871]" pageId="16" pageNumber="99">TX</collectionCode>
|
||
,
|
||
<collectingCountry id="2E9A760CF64AD63237EBC43A589BF8F1" box="[1214,1266,1847,1871]" name="United States of America" pageId="16" pageNumber="99">
|
||
<collectionCode id="309CAE59F64AD63237EBC43A589BF8F1" box="[1214,1266,1847,1871]" pageId="16" pageNumber="99">USA</collectionCode>
|
||
</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="1E976517F64AD6323078C45C59E3F8D4" box="[813,1418,1873,1898]" pageId="16" pageNumber="99" type="description">
|
||
<paragraph id="5632369CF64AD6323078C45C59E3F8D4" blockId="16.[813,1456,1450,1898]" box="[813,1418,1873,1898]" pageId="16" pageNumber="99">
|
||
<materialsCitation id="E6E53CC1F64AD6323078C45C59EFF8D4" ID-GBIF-Occurrence="2573304555" box="[813,1414,1873,1898]" collectionCode="ULLZ" country="Brazil" location="Brazil" pageId="16" pageNumber="99" specimenCode="ULLZ 14115" specimenCount="1">
|
||
<taxonomicName id="918D4D1FF64AD6323078C45C5FA3F8D7" authorityName="Theil & Felder" authorityYear="2020" baseAuthorityName="Bouvier" baseAuthorityYear="1917" box="[813,970,1873,1897]" class="Malacostraca" family="Pinnotheridae" genus="Tubicolixa" kingdom="Animalia" order="Decapoda" pageId="16" pageNumber="99" phylum="Arthropoda" rank="species" species="rapax" status="comb. nov.">
|
||
<emphasis id="64F9EA8EF64AD6323078C45C5FA3F8D7" box="[813,970,1873,1897]" italics="true" pageId="16" pageNumber="99">Tubicolixa rapax</emphasis>
|
||
</taxonomicName>
|
||
<taxonomicNameLabel id="7FCA57F5F64AD6323085C45F5841F8D4" box="[976,1064,1874,1898]" pageId="16" pageNumber="99" rank="species">n. comb.</taxonomicNameLabel>
|
||
<emphasis id="64F9EA8EF64AD632377BC45F582EF8D7" box="[1070,1095,1874,1897]" italics="true" pageId="16" pageNumber="99">—</emphasis>
|
||
<specimenCode id="062B9EE7F64AD6323718C45F58BBF8D7" box="[1101,1234,1873,1897]" pageId="16" pageNumber="99">ULLZ 14115</specimenCode>
|
||
(Ubatuba,
|
||
<collectingCountry id="2E9A760CF64AD6323617C45F5916F8D4" box="[1346,1407,1874,1898]" name="Brazil" pageId="16" pageNumber="99" value="Brazil">Brazil</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="1E976517F64AD6323078C49E5FF8F815" box="[813,913,1939,1965]" pageId="16" pageNumber="99" type="discussion">
|
||
<paragraph id="5632369CF64AD6323078C49E5FF8F815" blockId="16.[813,1456,1939,2030]" box="[813,913,1939,1965]" pageId="16" pageNumber="99">REMARKS</paragraph>
|
||
</subSubSection>
|
||
<paragraph id="5632369CF64AD6323078C4BE59D9F853" blockId="16.[813,1456,1939,2030]" pageId="16" pageNumber="99">
|
||
Genetic and morphological differences between specimens of
|
||
<taxonomicName id="918D4D1FF64AD6323078C4D958EDF850" authority="(Stimpson, 1860)" authorityName="Theil & Felder" authorityYear="2020" baseAuthorityName="Stimpson" baseAuthorityYear="1860" box="[813,1156,2003,2030]" class="Malacostraca" family="Pinnotheridae" genus="Tubicolixa" kingdom="Animalia" order="Decapoda" pageId="16" pageNumber="99" phylum="Arthropoda" rank="species" species="chaetopterana" status="comb. nov.">
|
||
<emphasis id="64F9EA8EF64AD6323078C4D95FA4F853" box="[813,973,2003,2029]" italics="true" pageId="16" pageNumber="99">T. chaetopterana</emphasis>
|
||
(Stimpson, 1860)
|
||
</taxonomicName>
|
||
<taxonomicNameLabel id="7FCA57F5F64AD63237DCC4D9588AF853" box="[1161,1251,2003,2030]" pageId="16" pageNumber="99" rank="species">n. comb.</taxonomicNameLabel>
|
||
from Venezuela and
|
||
</paragraph>
|
||
<paragraph id="5632369CF64BD63333D1C41959CEF853" blockId="17.[132,775,1812,2030]" lastBlockId="17.[813,1456,1812,2030]" pageId="17" pageNumber="100">
|
||
<collectingCountry id="2E9A760CF64BD63333D1C4195CAAF890" box="[132,195,1812,1838]" name="Belize" pageId="17" pageNumber="100">Belize</collectingCountry>
|
||
and those from the Gulf of
|
||
<collectingCountry id="2E9A760CF64BD63332B2C4195E5FF890" box="[487,566,1812,1838]" name="Mexico" pageId="17" pageNumber="100">Mexico</collectingCountry>
|
||
and North Atlantic coasts at minimum suggest population structure within this species. This taxon may represent a species complex, similar to that observed for some of the species of
|
||
<taxonomicName id="918D4D1FF64BD633310AC47E5EAFF833" authorityName="Rathbun" authorityYear="1983" box="[607,710,1907,1933]" class="Malacostraca" family="Pinnotheridae" genus="Scleroplax" kingdom="Animalia" order="Decapoda" pageId="17" pageNumber="100" phylum="Arthropoda" rank="genus">
|
||
<emphasis id="64F9EA8EF64BD633310AC47E5EAFF833" box="[607,710,1907,1933]" italics="true" pageId="17" pageNumber="100">Scleroplax</emphasis>
|
||
</taxonomicName>
|
||
, with different morphotypes at the species and/or population level likely adapted to different habitats and/or hosts. However, most preserved samples available to us at present do not represent sequence quality materials. Additional studies with larger and more broadly representative sample sizes based on markers with resolution at the population level should be undertaken, along with more detailed collection information regarding habitat and hosts. Additional samples of
|
||
<taxonomicName id="918D4D1FF64BD6333737C4995965F813" authorityName="Theil & Felder" authorityYear="2020" baseAuthorityName="Stimpson" baseAuthorityYear="1860" box="[1122,1292,1939,1965]" class="Malacostraca" family="Pinnotheridae" genus="Tubicolixa" kingdom="Animalia" order="Decapoda" pageId="17" pageNumber="100" phylum="Arthropoda" rank="species" species="chaetopterana" status="comb. nov.">
|
||
<emphasis id="64F9EA8EF64BD6333737C4995965F813" box="[1122,1292,1939,1965]" italics="true" pageId="17" pageNumber="100">T. chaetopterana</emphasis>
|
||
</taxonomicName>
|
||
<taxonomicNameLabel id="7FCA57F5F64BD6333646C499591DF813" box="[1299,1396,1939,1966]" pageId="17" pageNumber="100" rank="species">n. comb.</taxonomicNameLabel>
|
||
from
|
||
<collectingCountry id="2E9A760CF64BD6333078C4BE5F05F873" box="[813,876,1971,1997]" name="Belize" pageId="17" pageNumber="100">Belize</collectingCountry>
|
||
should further clarify the identification of that juvenile specimen, once at least a 12S sequence for can be obtained.
|
||
</paragraph>
|
||
<paragraph id="5632369CF648D63033CEC3D45EF2FDCC" blockId="18.[132,775,217,626]" pageId="18" pageNumber="101">
|
||
The
|
||
<materialsCitation id="E6E53CC1F648D630339DC3D45E52FEAA" ID-GBIF-Occurrence="2573304562" collectionCode="USNM" country="Argentina" location="Argentina" pageId="18" pageNumber="101" specimenCode="USNM 21593" specimenCount="1" typeStatus="holotype">
|
||
<typeStatus id="8936883EF648D630339DC3D45D42FF4D" box="[200,299,217,243]" pageId="18" pageNumber="101" type="holotype">holotypes</typeStatus>
|
||
of
|
||
<taxonomicName id="918D4D1FF648D630321CC3D75EC3FF4D" authority="Rathbun, 1898" authorityName="Rathbun" authorityYear="1898" box="[329,682,217,243]" class="Malacostraca" family="Pinnotheridae" genus="Pinnixa" kingdom="Animalia" order="Decapoda" pageId="18" pageNumber="101" phylum="Arthropoda" rank="species" species="brevipollex">
|
||
<emphasis id="64F9EA8EF648D630321CC3D75E61FF4D" box="[329,520,217,243]" italics="true" pageId="18" pageNumber="101">Pinnixa brevipollex</emphasis>
|
||
<bibRefCitation id="321C4B6DF648D6303159C3D45EC3FF4D" author="Rathbun" box="[524,682,217,243]" firstAuthor="Rathbun" pageId="18" pageNumber="101" pagination="567 - 616" refId="ref18533" refString="RATHBUN M. J. 1898. - The Brachyura collected by the U. S. Fish Commission steamer Albatross on the voyage from Norfolk, Virgina, to San Francisco, California 1887 - 1888. Proceedings U. S. National Museum 21: 567 - 616, XLI-XLIV. https: // doi. org / 10.5479 / si. 00963801.21 - 1162.567" type="journal article" year="1898">Rathbun, 1898</bibRefCitation>
|
||
</taxonomicName>
|
||
(
|
||
<specimenCode id="062B9EE7F648D63031E3C3D45CA4FEAA" pageId="18" pageNumber="101">
|
||
<collectionCode id="309CAE59F648D63031E3C3D45F6EFF4D" box="[694,775,217,243]" collectionName="USA, Washington D.C., National Museum of Natural History, [formerly, United States National Museum]" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:34871" lsid="urn:lsid:biocol.org:col:34871" name="Smithsonian Institution, National Museum of Natural History" pageId="18" pageNumber="101" type="Museum">USNM</collectionCode>
|
||
21593
|
||
</specimenCode>
|
||
, near La Plata estuary,
|
||
<collectingCountry id="2E9A760CF648D6303292C3F45E5DFEAA" box="[455,564,249,276]" name="Argentina" pageId="18" pageNumber="101">Argentina</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
and
|
||
<materialsCitation id="E6E53CC1F648D6303127C3F75F6EFE8A" ID-GBIF-Occurrence="2573304536" collectionCode="MCZ" country="Argentina" location="Argentina" pageId="18" pageNumber="101" specimenCode="MCZ 10997" specimenCount="1">
|
||
<taxonomicName id="918D4D1FF648D6303127C3F75D72FE8D" authority="Bouvier, 1917" authorityName="Bouvier" authorityYear="1917" class="Malacostraca" family="Pinnotheridae" genus="Pinnixa" kingdom="Animalia" order="Decapoda" pageId="18" pageNumber="101" phylum="Arthropoda" rank="species" species="rapax">
|
||
<emphasis id="64F9EA8EF648D6303127C3F75F6EFEAD" box="[626,775,250,275]" italics="true" pageId="18" pageNumber="101">Pinnixa rapax</emphasis>
|
||
Bouvier, 1917
|
||
</taxonomicName>
|
||
(
|
||
<specimenCode id="062B9EE7F648D630327DC2145DDEFE8D" box="[296,439,281,307]" pageId="18" pageNumber="101">MCZ 10997</specimenCode>
|
||
, Gulf of San Matías,
|
||
<collectingCountry id="2E9A760CF648D63031C6C2145F69FE8A" box="[659,768,281,308]" name="Argentina" pageId="18" pageNumber="101">Argentina</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
require further study and comparison, along with molecular and morphological studies based on contemporary samples representing their putatively separate populations. These species have been suggested to be synonyms, but the
|
||
<typeStatus id="8936883EF648D63031CAC2955F6EFE0C" box="[671,775,408,434]" pageId="18" pageNumber="101" type="holotype">holotypes</typeStatus>
|
||
remain to be compared (
|
||
<bibRefCitation id="321C4B6DF648D63032DBC2B55E48FE6D" author="Fenucci" box="[398,545,440,467]" firstAuthor="Fenucci" pageId="18" pageNumber="101" pagination="165 - 184" refId="ref17501" refString="FENUCCI J. L. 1975. - Los cangrejos de la familia Pinnotheridae del litoral argentino (Crustacea, Decapoda, Brachyura). Physis, Seccion A, Buenos Aires 34: 165 - 184." type="journal article" year="1975">Fenucci 1975</bibRefCitation>
|
||
;
|
||
<bibRefCitation id="321C4B6DF648D630317AC2B45E9EFE6C" author="Bezerra" box="[559,759,440,467]" etAl="et al." firstAuthor="Bezerra" pageId="18" pageNumber="101" pagination="1038 - 1043" refId="ref17116" refString="BEZERRA L. E. A., DE ALMEIDA A. O. & COELHO P. A. 2006. - Occurrence of the family Pinnotheridae De Haan (Crustacea, Decapoda, Brachyura) on the coast of Ceara State, Brazil. Revista Brasileira de Zoologia 23 (4): 1038 - 1043. https: // doi. org / 10.1590 / S 0101 - 81752006000400008" type="journal article" year="2006">
|
||
Bezerra
|
||
<emphasis id="64F9EA8EF648D63031D0C2B45ED0FE6C" box="[645,697,440,466]" italics="true" pageId="18" pageNumber="101">et al.</emphasis>
|
||
2006
|
||
</bibRefCitation>
|
||
). Some authors suggest there are differences in the male pleon (
|
||
<bibRefCitation id="321C4B6DF648D63033D8C2F55D63FDAC" author="Righi" box="[141,266,504,530]" firstAuthor="Righi" pageId="18" pageNumber="101" pagination="99 - 116" refId="ref18677" refString="RIGHI G. 1967. - Sobre alguns Decapoda do Brasil (Crustacea, Brachyura: Pinnotheridae e Parthenopidae). Papeis Avulsos de Zoologia, Sao Paulo 20: 99 - 116." type="journal article" year="1967">Righi 1967</bibRefCitation>
|
||
), but the allegedly junior synonym
|
||
<taxonomicName id="918D4D1FF648D63031CCC2F45E84FDAC" authorityName="Bouvier" authorityYear="1917" box="[665,749,505,530]" class="Malacostraca" family="Pinnotheridae" genus="Pinnixa" kingdom="Animalia" order="Decapoda" pageId="18" pageNumber="101" phylum="Arthropoda" rank="species" species="rapax">
|
||
<emphasis id="64F9EA8EF648D63031CCC2F45E84FDAC" box="[665,749,505,530]" italics="true" pageId="18" pageNumber="101">P. rapax</emphasis>
|
||
</taxonomicName>
|
||
is still considered a valid species (
|
||
<bibRefCitation id="321C4B6DF648D630328CC1145E11FD8C" author="Ng" box="[473,632,536,563]" etAl="et al." firstAuthor="Ng" pageId="18" pageNumber="101" pagination="1 - 286" refId="ref18261" refString="NG P. K. L., GUINOT D. & DAVIE P. J. F. 2008. - Systema Brachyura: Part I. An annotated checklist of extant Brachyuran crabs of the world. The Raffles Bulletin of Zoology 17: 1 - 286." type="journal article" year="2008">
|
||
Ng
|
||
<emphasis id="64F9EA8EF648D6303151C1145E50FD8C" box="[516,569,536,562]" italics="true" pageId="18" pageNumber="101">et al.</emphasis>
|
||
2008
|
||
</bibRefCitation>
|
||
). This group may represent yet another species complex, and we elect to for now continue their treatment as separate taxa
|
||
<subSection id="3F022F77F648D63031C2C1555EF2FDCC" box="[663,667,600,626]" pageId="18" pageNumber="101" type="multiple">.</subSection>
|
||
</paragraph>
|
||
</treatment>
|
||
</document> |