137 lines
8.6 KiB
XML
137 lines
8.6 KiB
XML
<document ID-DOI="http://dx.doi.org/10.3897/mycokeys.33.23670" ID-GBIF-Dataset="42cbc858-8729-4618-9467-590ea7ca068e" ID-PMC="PMC6283267" ID-Pensoft-Pub="1314-4049-33-25" ID-PubMed="30532625" ModsDocAuthor="" ModsDocDate="2018" ModsDocID="1314-4049-33-25" ModsDocOrigin="MycoKeys 33" ModsDocTitle="Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand" checkinTime="1522305991188" checkinUser="pensoft" docAuthor="Tibpromma, Saowaluck, Hyde, Kevin D., Bhat, Jayarama D., Mortimer, Peter E., Xu, Jianchu, Promputtha, Itthayakorn, Doilom, Mingkwan, Yang, Jun-Bo, Tang, Alvin M. C. & Karunarathna, Samantha C." docDate="2018" docId="6FD0E28464F1BAF89D087A70699E74A5" docLanguage="en" docName="MycoKeys 33: 25-67" docOrigin="MycoKeys 33" docSource="http://dx.doi.org/10.3897/mycokeys.33.23670" docTitle="Alternaria burnsii Uppal, Patel & Kamat, Indian J. Agric. Sci. 8: 49 1938" docType="treatment" docVersion="6" lastPageNumber="40" masterDocId="B85B6F41CC50A742FFD77F5B3B598C43" masterDocTitle="Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand" masterLastPageNumber="67" masterPageNumber="25" pageNumber="40" updateTime="1668135980046" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Identification of endophytic fungi from leaves of Pandanaceae based on their morphotypes and DNA sequence data from southern Thailand</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Tibpromma, Saowaluck</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Hyde, Kevin D.</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Bhat, Jayarama D.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Mortimer, Peter E.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Xu, Jianchu</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Promputtha, Itthayakorn</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Doilom, Mingkwan</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Yang, Jun-Bo</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Tang, Alvin M. C.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Karunarathna, Samantha C.</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2018</mods:date>
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<mods:detail type="volume">
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<mods:number>33</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>25</mods:start>
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<mods:end>67</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:location>
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<mods:url>http://dx.doi.org/10.3897/mycokeys.33.23670</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">http://dx.doi.org/10.3897/mycokeys.33.23670</mods:identifier>
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<mods:identifier type="Pensoft-Pub">1314-4049-33-25</mods:identifier>
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</mods:mods>
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<treatment ID-GBIF-Taxon="142664214" LSID="urn:lsid:plazi:treatment:6FD0E28464F1BAF89D087A70699E74A5" httpUri="http://treatment.plazi.org/id/6FD0E28464F1BAF89D087A70699E74A5" lastPageNumber="40" pageId="15" pageNumber="40">
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<subSubSection pageId="15" pageNumber="40" type="nomenclature">
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<paragraph pageId="15" pageNumber="40">
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<taxonomicName authority="Uppal, Patel & Kamat, Indian J. Agric. Sci. 8: 49 (1938)" class="Dothideomycetes" family="Pleosporaceae" genus="Alternaria" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Alternaria burnsii" order="Pleosporales" pageId="15" pageNumber="40" phylum="Ascomycota" rank="species" species="burnsii">Alternaria burnsii Uppal, Patel & Kamat, Indian J. Agric. Sci. 8: 49 (1938)</taxonomicName>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="15" pageNumber="40" type="description">
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<paragraph pageId="15" pageNumber="40">Culture characteristics.</paragraph>
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<paragraph pageId="15" pageNumber="40">
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<taxonomicName genus="Colonies" lsidName="Colonies" pageId="15" pageNumber="40" rank="genus">Colonies</taxonomicName>
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on PDA (Figure 2, PE26), superficial, white-orange to cream, circular, entire edge, smooth, flossy, velvety and raised on surface media; reverse yellow-white at the margin and yellow-brown in centre. Not sporulating in culture.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="15" pageNumber="40" type="genbank numbers">
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<paragraph pageId="15" pageNumber="40">GenBank numbers.</paragraph>
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<paragraph pageId="15" pageNumber="40">ITS=MG646973, LSU=MG646952, TEF1=MG646987.</paragraph>
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</subSubSection>
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<subSubSection pageId="15" pageNumber="40" type="notes">
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<paragraph pageId="15" pageNumber="40">Notes.</paragraph>
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<paragraph pageId="15" pageNumber="40">
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<taxonomicName class="Dothideomycetes" family="Pleosporaceae" genus="Alternaria" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Alternaria burnsii" order="Pleosporales" pageId="15" pageNumber="40" phylum="Ascomycota" rank="species" species="burnsii">Alternaria burnsii</taxonomicName>
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was introduced by
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<bibRefCitation author="Uppal, BN" journalOrPublisher="Indian Journal of Agricultural Science" pageId="37" pageNumber="62" pagination="49 - 62" title="Alternaria blight of Cumin." volume="8" year="1938">Uppal et al. (1938)</bibRefCitation>
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from India on
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<taxonomicName genus="Cumnium" lsidName="Cumnium cyminum" pageId="15" pageNumber="40" rank="species" species="cyminum">Cumnium cyminum</taxonomicName>
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. This species has a close phylogenetic relationship with
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<taxonomicName class="Dothideomycetes" family="Pleosporaceae" genus="Alternaria" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Alternaria tomato" order="Pleosporales" pageId="15" pageNumber="40" phylum="Ascomycota" rank="species" species="tomato">Alternaria tomato</taxonomicName>
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and
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<taxonomicName lsidName="A. jacinthicola" pageId="15" pageNumber="40" rank="species" species="jacinthicola">A. jacinthicola</taxonomicName>
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(
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<bibRefCitation author="Woudenberg, JHC" journalOrPublisher="Studies in Mycology" pageId="38" pageNumber="63" url="https://doi.org/10.1016/j.simyco.2015.07.001" year="2015">Woudenberg et al. 2015</bibRefCitation>
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). Results from phylogenetic analysis show that the
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<normalizedToken originalValue="authors’">authors'</normalizedToken>
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collection belongs to
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<taxonomicName class="Dothideomycetes" family="Pleosporaceae" genus="Alternaria" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Alternaria burnsii" order="Pleosporales" pageId="15" pageNumber="40" phylum="Ascomycota" rank="species" species="burnsii">Alternaria burnsii</taxonomicName>
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with a relatively high bootstrap support (89% in ML) (Figure 11). Nucleotides across the ITS regions of
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<taxonomicName class="Dothideomycetes" family="Pleosporaceae" genus="Alternaria" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Alternaria burnsii" order="Pleosporales" pageId="15" pageNumber="40" phylum="Ascomycota" rank="species" species="burnsii">Alternaria burnsii</taxonomicName>
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CBS 108.27 and the isolates were compared and the authors noted that they are identical.
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</paragraph>
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<caption pageId="15" pageNumber="40">
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<paragraph pageId="15" pageNumber="40">
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Figure 11. Phylogram generated from maximum likelihood analysis based on ITS, TEF1, LSU and RPB2 sequence data. Maximum likelihood bootstrap values are given above/below the nodes. The newly generated sequences are in red bold. The tree is rooted with
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<taxonomicName class="Dothideomycetes" family="Pleosporaceae" genus="Pleospora" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Pleospora herbarum" order="Pleosporales" pageId="15" pageNumber="40" phylum="Ascomycota" rank="species" species="herbarum">Pleospora herbarum</taxonomicName>
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.
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</paragraph>
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</caption>
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</subSubSection>
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</treatment>
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</document> |