147 lines
14 KiB
XML
147 lines
14 KiB
XML
<document id="CE50D803C538B6D75AA1294920C05873" ID-CLB-Dataset="20668" ID-DOI="10.1099/ijsem.0.003718" ID-GBIF-Dataset="da1732af-d289-46d9-a8bc-70410692d159" ID-ISSN="1466-5034" ID-Zenodo-Dep="6048664" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644597121665" checkinUser="felipe" docAuthor="Liu, Shao-Wei, Xue, Chun-Mei, Li, Fei-Na & Sun, Cheng-Hang" docDate="2020" docId="ED59347AFFBBFFCAEA462451FAB0CAA4" docLanguage="en" docName="IntJSystEvolMicrobiol.70.1.77-82.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (1)" docSource="http://dx.doi.org/10.1099/ijsem.0.003718" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Nocardioides vastitatis Liu & Xue & Li & Sun 2020, SP. NOV." docType="treatment" docVersion="8" lastPageNumber="81" masterDocId="11604C02FFBFFFCEEA3F223AFFA4CE64" masterDocTitle="Nocardioides vastitatis sp. nov., isolated from Taklamakan desert soil" masterLastPageNumber="82" masterPageNumber="77" pageNumber="81" updateTime="1699310215344" updateUser="ExternalLinkService">
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<mods:title id="3DFD5F4F3D14F5F2189EB0F7043AE4D9">Nocardioides vastitatis sp. nov., isolated from Taklamakan desert soil</mods:title>
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<mods:namePart id="3A3D2620AF2C942D1BA6CB27BDB3D570">Liu, Shao-Wei</mods:namePart>
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<mods:roleTerm id="80407EE9032A403F42428A05691A4E6D">Author</mods:roleTerm>
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<mods:namePart id="A7CCA2169D76693E8B740D6E75C8E215">Xue, Chun-Mei</mods:namePart>
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<mods:namePart id="8BA3D59DCA86C21CBF3B25D83AC85DAD">Li, Fei-Na</mods:namePart>
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<mods:roleTerm id="0E07607154562A5B623A2165056FF433">Author</mods:roleTerm>
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<mods:namePart id="0EA5FA4480695D81E897811D41222A4D">Sun, Cheng-Hang</mods:namePart>
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<mods:typeOfResource id="CC37337127722FDB573FB809354FCF6E">text</mods:typeOfResource>
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<mods:title id="1E683F53143A9D13BE6F18E0CE159307">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="DACFD1CCF68C3581DB5057B2B11FAD12">
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<mods:date id="69C0FA7F3A97C261768664666F612B68">2020</mods:date>
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<mods:number id="96F3DD6C9AB0938E40D6E6EA6365D2B2">2020-01-01</mods:number>
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<mods:number id="42B647EB4A55185087AEC3C487430357">70</mods:number>
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<treatment id="ED59347AFFBBFFCAEA462451FAB0CAA4" ID-DOI="http://doi.org/10.5281/zenodo.6309539" ID-GBIF-Taxon="193365293" ID-Zenodo-Dep="6309539" LSID="urn:lsid:plazi:treatment:ED59347AFFBBFFCAEA462451FAB0CAA4" httpUri="http://treatment.plazi.org/id/ED59347AFFBBFFCAEA462451FAB0CAA4" lastPageNumber="81" pageId="4" pageNumber="81">
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<subSubSection id="2DEAD6E7FFBBFFCAEA462451FF50C8C9" pageId="4" pageNumber="81" type="nomenclature">
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<paragraph id="654F856CFFBBFFCAEA462451FF50C8C9" blockId="4.[121,759,1643,1949]" pageId="4" pageNumber="81">
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<heading id="3E073200FFBBFFCAEA462451FF50C8C9" allCaps="true" bold="true" centered="true" fontSize="12" level="2" pageId="4" pageNumber="81" reason="3">
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<emphasis id="5784597EFFBBFFCAEA462451FF50C8C9" bold="true" pageId="4" pageNumber="81">
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DESCRIPTION OF
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<taxonomicName id="A2F0FEEFFFBBFFCAEB512451FD41C8EC" authority="Liu & Xue & Li & Sun, 2020" authorityName="Liu & Xue & Li & Sun" authorityYear="2020" box="[366,741,1643,1672]" class="Actinobacteridae" family="Nocardioidaceae" genus="Nocardioides" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="81" phylum="Actinobacteria" rank="species" species="vastitatis" status="sp. nov.">
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<emphasis id="5784597EFFBBFFCAEB512451FD41C8EC" bold="true" box="[366,741,1643,1672]" italics="true" pageId="4" pageNumber="81">NOCARDIOIDES VASTITATIS</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="4CB7E405FFBBFFCAEA4624AAFF50C8C9" box="[121,244,1680,1709]" pageId="4" pageNumber="81" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="2DEAD6E7FFBBFFCAEA462486FF51C897" pageId="4" pageNumber="81" type="etymology">
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<paragraph id="654F856CFFBBFFCAEA462486FF51C897" blockId="4.[121,759,1643,1949]" pageId="4" pageNumber="81">
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<taxonomicName id="A2F0FEEFFFBBFFCAEA462486FEC2C8B0" authorityName="Liu & Xue & Li & Sun" authorityYear="2020" box="[121,358,1724,1748]" class="Actinobacteridae" family="Nocardioidaceae" genus="Nocardioides" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="81" phylum="Actinobacteria" rank="species" species="vastitatis">
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<emphasis id="5784597EFFBBFFCAEA462486FEC2C8B0" box="[121,358,1724,1748]" italics="true" pageId="4" pageNumber="81">Nocardioides vastitatis</emphasis>
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</taxonomicName>
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(vas.ti.ta′ tis. L. masc. gen. n.
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<taxonomicName id="A2F0FEEFFFBBFFCAE8A62487FD53C8B0" authorityName="Liu & Xue & Li & Sun" authorityYear="2020" box="[665,759,1725,1748]" class="Actinobacteridae" family="Nocardioidaceae" genus="Nocardioides" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="81" phylum="Actinobacteria" rank="species" species="vastitatis">
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<emphasis id="5784597EFFBBFFCAE8A62487FD53C8B0" box="[665,759,1725,1748]" italics="true" pageId="4" pageNumber="81">vastitatis</emphasis>
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</taxonomicName>
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of a desert).
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</paragraph>
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</subSubSection>
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<subSubSection id="2DEAD6E7FFBBFFCAEA462533FC0BCA52" pageId="4" pageNumber="81" type="description">
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<paragraph id="654F856CFFBBFFCAEA462533FAB0CF4E" blockId="4.[121,759,1643,1949]" lastBlockId="4.[827,1466,182,1217]" pageId="4" pageNumber="81">
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Cells are Gram-stain-positive, aerobic, non-motile, nonspore-forming and rod-shaped (approximately 0.4– 0.7×1.1–2.3 µm). Colonies on ISP 2 agar are circular, smooth, opaque, creamy white in colour. Grows well on ISP 2, TSA, R2A agar and nutrient agar. Poor growth occurs on ISP 3, ISP 4, ISP 5 and ISP 7 agar. Growth occurs at 10– 37
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<superScript id="92852824FFBBFFCAE96622E9FCC4CEBA" attach="right" box="[857,864,211,222]" fontSize="6" pageId="4" pageNumber="81">Ǫ</superScript>
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C (optimum, 28–30
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<superScript id="92852824FFBBFFCAEE0422E9FBE6CEBA" attach="right" box="[1083,1090,211,222]" fontSize="6" pageId="4" pageNumber="81">Ǫ</superScript>
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C), pH 6.0--9.0 (optimum, pH 7.0) and with NaCl concentrations of 0–3 % (w/v; optimum, 0 %). Catalase-positive and oxidase-negative.
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</paragraph>
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<paragraph id="654F856CFFBBFFCAE904237BFC0BCA52" blockId="4.[827,1466,182,1217]" pageId="4" pageNumber="81">
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Hydrolyses Tween 20 and Tween 40, but does not hydrolyse casein, gelatin, Tween 80, carboxymethyl-cellulose, skimmed milk, starch and aesculin. Negative for nitrate reduction, indole production, glucose fermentation, H
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<subScript id="F9748729FFBBFFCAEF9C239CFA09CFD3" attach="both" box="[1443,1453,422,439]" fontSize="7" pageId="4" pageNumber="81">2</subScript>
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S production, urease and arginine dihydrolase. Assimilates
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<subScript id="F9748729FFBBFFCAEF9E23FBFC38CF95" attach="right" fontSize="7" pageId="4" pageNumber="81">D-mannitol</subScript>
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and malate. Does not assimilate D- glucose, L- arabinose,
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<subScript id="F9748729FFBBFFCAE9BE23C4FC33CC6B" attach="right" box="[897,919,504,527]" fontSize="7" pageId="4" pageNumber="81">D-</subScript>
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mannose,
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<emphasis id="5784597EFFBBFFCAEE3723C3FBBFCC74" box="[1032,1051,505,528]" italics="true" pageId="4" pageNumber="81">N</emphasis>
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-
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<subScript id="F9748729FFBBFFCAEE1D23C2FB24CC74" attach="left" box="[1058,1152,504,528]" fontSize="7" pageId="4" pageNumber="81">acetyl-D-</subScript>
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glucosamine, maltose, potassium gluconate, caprate, adipate, citrate and phenylacetate. Positive for alkaline phosphatase, esterase (C4), esterase lipase (C8), leucine arylamidase, acid phosphatase, naphthol-AS-BI-phosphohydrolase, b- galactosidase, a- glucosidase and b- glucosidase, but negative for lipase (C14), valine arylamidase, cysteine arylamidase, trypsin, a- chymotrypsin, a- galactosidase, b- glucuronidase,
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<emphasis id="5784597EFFBBFFCAEE8C20F5FB62CC82" box="[1203,1222,719,742]" italics="true" pageId="4" pageNumber="81">N</emphasis>
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-acetyl-b- glucosaminidase, a- mannosidase and a- fucosidase. Acids are produced from L- arabinose, D- xylose (weakly), D- glucose, D- fructose, L- rhamnose, inositol, mannitol, aesculin, sucrose (weakly), inulin (weakly) and raffinose (weakly). The cell-wall peptidoglycan contains LL- diaminopimelic acid as the diagnostic diamino acid. The predominant menaquinone is MK-8(H
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<subScript id="F9748729FFBBFFCAEF9F21B5FA0ECDC4" attach="left" box="[1440,1450,911,928]" fontSize="7" pageId="4" pageNumber="81">4</subScript>
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). The polar lipids comprise DPG, PG, PI, an unidentified phospholipid and three unidentified lipids. The major whole-cell fatty acids (>10 %) are iso-C
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<subScript id="F9748729FFBBFFCAEED621D1FAB5CD98" attach="left" box="[1257,1297,1003,1020]" fontSize="7" pageId="4" pageNumber="81">16: 0</subScript>
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and 10-methyl C
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<subScript id="F9748729FFBBFFCAE9732633FCD0CA7E" attach="left" box="[844,884,1033,1050]" fontSize="7" pageId="4" pageNumber="81">18: 0</subScript>
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(TBSA). The G+C content of the genomic DNA is 70.4 mol%.
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</paragraph>
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</subSubSection>
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<subSubSection id="2DEAD6E7FFBBFFCAE9042676FAB0CAA4" pageId="4" pageNumber="81" type="materials_examined">
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<paragraph id="654F856CFFBBFFCAE9042676FAB0CAA4" blockId="4.[827,1466,182,1217]" pageId="4" pageNumber="81">
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<materialsCitation id="D5988F31FFBBFFCAE9042676FAB4CAA4" ID-GBIF-Occurrence="3465781301" accessionNumber="JCM 33365" collectorName="Autonomous Region, PR" country="China" location="Taklamakan" municipality="Autonomous Region" pageId="4" pageNumber="81" specimenCount="1" stateProvince="Xinjiang Uygur" typeStatus="holotype">
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The
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<typeStatus id="BA4B3BCEFFBBFFCAE94D2677FC3BCA01" box="[882,927,1101,1125]" pageId="4" pageNumber="81">type</typeStatus>
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strain, 21Sc5-5
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<superScript id="92852824FFBBFFCAEE6D267CFBFACA33" attach="left" box="[1106,1118,1094,1111]" fontSize="7" pageId="4" pageNumber="81">T</superScript>
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(=JCM 33365
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<superScript id="92852824FFBBFFCAEF3B267CFAB4CA33" attach="none" box="[1284,1296,1094,1111]" fontSize="7" pageId="4" pageNumber="81">T</superScript>
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=CGMCC 4.76 08
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<superScript id="92852824FFBBFFCAE96B265FFCC4CA12" attach="none" box="[852,864,1125,1142]" fontSize="7" pageId="4" pageNumber="81">T</superScript>
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), was isolated from soil sampled at the rhizosphere of
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<taxonomicName id="A2F0FEEFFFBBFFCAE90426B3FC43CAC5" box="[827,999,1161,1185]" class="Magnoliopsida" family="Asteraceae" genus="Inula" kingdom="Plantae" order="Asterales" pageId="4" pageNumber="81" phylum="Tracheophyta" rank="species" species="salsoloides">
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<emphasis id="5784597EFFBBFFCAE90426B3FC43CAC5" box="[827,999,1161,1185]" italics="true" pageId="4" pageNumber="81">Inula salsoloides</emphasis>
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</taxonomicName>
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collected in the
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<location id="602FD3B7FFBBFFCAEEA626B3FAB9CAC5" LSID="urn:lsid:plazi:treatment:ED59347AFFBBFFCAEA462451FAB0CAA4:602FD3B7FFBBFFCAEEA626B3FAB9CAC5" box="[1177,1309,1161,1185]" country="China" municipality="Autonomous Region" name="Taklamakan" pageId="4" pageNumber="81" stateProvince="Xinjiang Uygur">Taklamakan</location>
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desert in
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<collectingRegion id="A7344B8EFFBBFFCAEFB626B3FC1CCAA5" country="China" name="Xinjiang Uygur" pageId="4" pageNumber="81">Xinjiang Uygur</collectingRegion>
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<collectorName id="C805E0BAFFBBFFCAE9802692FB62CAA4" box="[959,1222,1192,1216]" pageId="4" pageNumber="81">
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<collectingMunicipality id="852B1F16FFBBFFCAE9802692FB39CAA4" box="[959,1181,1192,1216]" pageId="4" pageNumber="81">Autonomous Region</collectingMunicipality>
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, PR
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</collectorName>
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<collectingCountry id="1DE7C5FCFFBBFFCAEEF22692FAB4CAA4" box="[1229,1296,1192,1216]" name="China" pageId="4" pageNumber="81">China</collectingCountry>
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</materialsCitation>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |