158 lines
14 KiB
XML
158 lines
14 KiB
XML
<document id="4C5709CB7BE92AD686D795F86641FF8E" ID-DOI="10.1099/ijsem.0.004355" ID-ISSN="1466-5034" ID-Zenodo-Dep="6224074" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1645466072032" checkinUser="felipe" docAuthor="Lu, Huibin, Deng, Tongchu, Liu, Feifei, Wang, Yonghong, Yang, Xunan & Xu, Meiying" docDate="2020" docId="03F587CF4424FFDAB32CFCB8FD26FF47" docLanguage="en" docName="IntJSystEvolMicrobiol.70.8.4822-4830.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (8)" docSource="http://dx.doi.org/10.1099/ijsem.0.004355" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Duganella flavida Lu & Deng & Liu & Wang & Yang & Xu 2020, SP. NOV." docType="treatment" docVersion="5" lastPageNumber="4828" masterDocId="FFCCFFB74422FFDDB010FFD0FFBFFFAA" masterDocTitle="DUganella laCTea sp. nov., DUganella gUangzHOUensis sp. nov., DUganella flavida sp. nov. and Massilia rivUli sp. nov., isolated from a subtropical stream in PR China and proposal to reclassify DUganella ginsengisOli as Massilia ginsengisOli comb. nov." masterLastPageNumber="4830" masterPageNumber="4822" pageNumber="4828" updateTime="1699299049005" updateUser="plazi">
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<mods:title id="8721DC0C62C590803C183D970FA1D8EA">DUganella laCTea sp. nov., DUganella gUangzHOUensis sp. nov., DUganella flavida sp. nov. and Massilia rivUli sp. nov., isolated from a subtropical stream in PR China and proposal to reclassify DUganella ginsengisOli as Massilia ginsengisOli comb. nov.</mods:title>
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<mods:roleTerm id="642C326893E02A5710AB9AB8DC23D83F">Author</mods:roleTerm>
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<mods:namePart id="91F747CE6D439E3203A7B164940EE2DE">Lu, Huibin</mods:namePart>
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<mods:roleTerm id="A283817A32A178C5FED167198C14DC1E">Author</mods:roleTerm>
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<mods:namePart id="6E5B54AD39468C4A911C867D08C37B63">Deng, Tongchu</mods:namePart>
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</mods:name>
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<mods:roleTerm id="7320D0B9DCD51278029067B23A6791EE">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="E70CF33F7BA8FB9F73A997A758159CB5">Liu, Feifei</mods:namePart>
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</mods:name>
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<mods:name id="61FF53925D325ECD63DA46A06D8A2780" type="personal">
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<mods:roleTerm id="F81BEA4CACD334D659D8D68D27C26440">Author</mods:roleTerm>
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<mods:namePart id="85217985D569CA53EDCE492199A1CC4C">Wang, Yonghong</mods:namePart>
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<mods:name id="37577D3E8B9A309D4C4F4D11910750A9" type="personal">
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<mods:roleTerm id="419CF8C37B301EB7F7BE7662AFFCF7FD">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="84C52583CB3BA8FF34415AD7B0FD98A4">Yang, Xunan</mods:namePart>
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<mods:roleTerm id="1D5AAD6C0F074F4E8A1A848CED942FF1">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="5300F4DBEE178CD6C5C75FA32D68C405">Xu, Meiying</mods:namePart>
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<mods:typeOfResource id="7380066A8BFC2505BD373A73EC483BA9">text</mods:typeOfResource>
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<mods:title id="14755167B4CF7ED65C1F5985EA819C4E">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="C849D6CF0E7B02CCB00CC45666979D56">
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<mods:date id="528F89A459A26564E99FC6BD59F6205D">2020</mods:date>
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<mods:number id="B52512D586A147EEF5DEFADBF1F1FFC1">2020-08-01</mods:number>
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<mods:number id="868F5D6FE9AAE934E3CA9D9FE22DB71E">70</mods:number>
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<mods:url id="263CD82CB54D73553E04262066E34CD5">http://dx.doi.org/10.1099/ijsem.0.004355</mods:url>
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<mods:classification id="577C25852DA100465D241EAEA28BA908">journal article</mods:classification>
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<mods:identifier id="339C620EB14A6535967161EC06FF3CD4" type="DOI">10.1099/ijsem.0.004355</mods:identifier>
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<mods:identifier id="0006FE0F973C11C35D9C7E987983E1EA" type="ISSN">1466-5034</mods:identifier>
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<treatment id="03F587CF4424FFDAB32CFCB8FD26FF47" ID-DOI="http://doi.org/10.5281/zenodo.6314508" ID-Zenodo-Dep="6314508" LSID="urn:lsid:plazi:treatment:03F587CF4424FFDAB32CFCB8FD26FF47" httpUri="http://treatment.plazi.org/id/03F587CF4424FFDAB32CFCB8FD26FF47" lastPageId="7" lastPageNumber="4828" pageId="6" pageNumber="4828">
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<subSubSection id="C34665524424FFDBB32CFCB8FCC2FC00" pageId="6" pageNumber="4828" type="nomenclature">
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<paragraph id="8BE336D94424FFDBB32CFCB8FCC2FC00" blockId="6.[826,1473,872,1956]" pageId="6" pageNumber="4828">
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<heading id="D0AB81B54424FFDBB32CFCB8FCC2FC00" allCaps="true" bold="true" fontSize="12" level="2" pageId="6" pageNumber="4828" reason="3">
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<emphasis id="B928EACB4424FFDBB32CFCB8FCC2FC00" bold="true" pageId="6" pageNumber="4828">
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DESCRIPTION OF
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<taxonomicName id="4C5C4D5A4424FFDBB425FCB8FADFFC2F" authority="Lu & Deng & Liu & Wang & Yang & Xu, 2020" authorityName="Lu & Deng & Liu & Wang & Yang & Xu" authorityYear="2020" box="[1077,1376,872,901]" class="Betaproteobacteria" family="Oxalobacteraceae" genus="Duganella" kingdom="Bacteria" order="Burkholderiales" pageId="6" pageNumber="4828" phylum="Proteobacteria" rank="species" species="flavida" status="sp. nov.">
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<emphasis id="B928EACB4424FFDBB425FCB8FADFFC2F" bold="true" box="[1077,1376,872,901]" italics="true" pageId="6" pageNumber="4828">DUGANELLA FLAVIDA</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A21B57B04424FFDBB578FCB8FCC2FC00" pageId="6" pageNumber="4828" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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<subSubSection id="C34665524424FFDBB32CFC67FB0EFC44" pageId="6" pageNumber="4828" type="etymology">
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<paragraph id="8BE336D94424FFDBB32CFC67FB0EFC44" blockId="6.[826,1473,872,1956]" pageId="6" pageNumber="4828">
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<taxonomicName id="4C5C4D5A4424FFDBB32CFC67FC42FC65" authorityName="Lu & Deng & Liu & Wang & Yang & Xu" authorityYear="2020" box="[828,1021,951,975]" class="Betaproteobacteria" family="Oxalobacteraceae" genus="Duganella" kingdom="Bacteria" order="Burkholderiales" pageId="6" pageNumber="4828" phylum="Proteobacteria" rank="species" species="flavida">
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<emphasis id="B928EACB4424FFDBB32CFC67FC42FC65" box="[828,1021,951,975]" italics="true" pageId="6" pageNumber="4828">Duganella flavida</emphasis>
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</taxonomicName>
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(fla’vi.da. L. fem. adj.
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<taxonomicName id="4C5C4D5A4424FFDBB4EBFC67FAFAFC65" authorityName="Lu & Deng & Liu & Wang & Yang & Xu" authorityYear="2020" box="[1275,1349,951,975]" class="Betaproteobacteria" family="Oxalobacteraceae" genus="Duganella" kingdom="Bacteria" order="Burkholderiales" pageId="6" pageNumber="4828" phylum="Proteobacteria" rank="species" species="flavida">
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<emphasis id="B928EACB4424FFDBB4EBFC67FAFAFC65" box="[1275,1349,951,975]" italics="true" pageId="6" pageNumber="4828">flavida</emphasis>
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</taxonomicName>
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yellowish, referring to the colour of colonies).
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</paragraph>
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<subSubSection id="C34665524424FFDAB32CFBD4FD26FF47" lastPageId="7" lastPageNumber="4829" pageId="6" pageNumber="4828" type="description">
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<paragraph id="8BE336D94424FFDBB32CFBD4FC66F893" blockId="6.[826,1473,872,1956]" pageId="6" pageNumber="4828">
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Cells are Gram-stain-negative, facultative anaerobic, rodshaped, motile with several flagella, 2.2–3.0 µm long and 0.7–0.8 µm wide. Colonies are pale yellow and convex. Growth occurs at 4–34 °C (optimum, 24 °C), pH 4.0–10.5 (optimum, pH 7.0–7.5) and 0–1.0% NaCl (w/v; optimum, 0%). Positive for oxidase, catalase and urease, but negative for nitrate reduction, H
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<subScript id="17D8349C4424FFDBB468FB1CFB3FFB70" attach="both" box="[1144,1152,1228,1242]" fontSize="6" pageId="6" pageNumber="4828">2</subScript>
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S production, phenylalanine deaminase, VP test, methyl red test and indole production. It hydrolyses Tweens (20 and 60), gelatin, aesculin and starch, but not casein, Tween 40 or Tween 80. Utilizes maltose monohydrate, lactose monohydrate, D-glucose, sucrose, L-arabinose, starch and sodium pyruvate; weakly utilizes L-proline, but not trehalose dihydrate, D-fructose, glycerol, mannitol, D-sorbitol, L-glutamic acid, L-valine, glycine, L-serine,L-aspartic acid, sodium acetate anhydrous, sodium oxalate, sodium formate dihydrate or disodium fumarate. Negative for esterase (C4), lipase (C14), cystine arylamidase,
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<emphasis id="B928EACB4424FFDBB391F9DEFC2FF98F" box="[897,912,1550,1573]" italics="true" pageId="6" pageNumber="4828">α</emphasis>
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-chymotrypsin,
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||
<emphasis id="B928EACB4424FFDBB457F9DEFBE9F98F" box="[1095,1110,1550,1573]" italics="true" pageId="6" pageNumber="4828">α</emphasis>
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||
-galactosidase,
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<emphasis id="B928EACB4424FFDBB513F9DDFAAEF98F" box="[1283,1297,1549,1573]" italics="true" pageId="6" pageNumber="4828">β</emphasis>
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||
-glucuronidase,
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||
<emphasis id="B928EACB4424FFDBB32CF9FCFCF5F9EE" box="[828,842,1580,1604]" italics="true" pageId="6" pageNumber="4828">β</emphasis>
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||
-glucosidase,
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||
<emphasis id="B928EACB4424FFDBB3C9F9FCFC58F9E9" box="[985,999,1580,1603]" italics="true" pageId="6" pageNumber="4828">α</emphasis>
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-mannosidase and
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<emphasis id="B928EACB4424FFDBB4A0F9FCFB01F9E9" box="[1200,1214,1580,1603]" italics="true" pageId="6" pageNumber="4828">α</emphasis>
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-fucosidase; positive for alkaline phosphatase, esterase lipase (C8), leucine arylamidase, valine arylamidase, trypsin, acid phosphatase, naphthol- AS-BI-phosphohydrolase,
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<emphasis id="B928EACB4424FFDBB477F958FBCAF90A" box="[1127,1141,1672,1696]" italics="true" pageId="6" pageNumber="4828">β</emphasis>
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-galactosidase,
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<emphasis id="B928EACB4424FFDBB536F958FA8AF935" box="[1318,1333,1672,1695]" italics="true" pageId="6" pageNumber="4828">α</emphasis>
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-glucosidase and
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<emphasis id="B928EACB4424FFDBB37CF977FCC0F914" box="[876,895,1703,1726]" italics="true" pageId="6" pageNumber="4828">N</emphasis>
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-acetyl-
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<emphasis id="B928EACB4424FFDBB3C1F976FC60F914" box="[977,991,1702,1726]" italics="true" pageId="6" pageNumber="4828">β</emphasis>
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-glucosaminidase. The major fatty acids are C
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<subScript id="17D8349C4424FFDBB35EF905FCD5F949" attach="left" box="[846,874,1749,1763]" fontSize="6" pageId="6" pageNumber="4828">16:1</subScript>
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<emphasis id="B928EACB4424FFDBB37DF916FC3FF977" box="[877,896,1734,1757]" italics="true" pageId="6" pageNumber="4828">ω</emphasis>
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7
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<emphasis id="B928EACB4424FFDBB39DF916FC28F977" box="[909,919,1734,1757]" italics="true" pageId="6" pageNumber="4828">c</emphasis>
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, C
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<subScript id="17D8349C4424FFDBB3A8F905FC6BF949" attach="left" box="[952,980,1749,1763]" fontSize="6" pageId="6" pageNumber="4828">16:0</subScript>
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, C
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<subScript id="17D8349C4424FFDBB3E5F905FBAEF949" attach="left" box="[1013,1041,1749,1763]" fontSize="6" pageId="6" pageNumber="4828">12:0</subScript>
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and C
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<subScript id="17D8349C4424FFDBB44CF905FBC7F949" attach="left" box="[1116,1144,1749,1763]" fontSize="6" pageId="6" pageNumber="4828">18:1</subScript>
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ω7
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<emphasis id="B928EACB4424FFDBB48BF916FB1AF977" box="[1179,1189,1734,1757]" italics="true" pageId="6" pageNumber="4828">c</emphasis>
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. The polar lipids include phosphatidylethanolamine, phosphatidylglycerol and one unidentified phospholipid. The G+C content of genomic DNA is 60.8%.
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</paragraph>
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<paragraph id="8BE336D94424FFDAB32CF89FFD26FF47" blockId="6.[826,1473,872,1956]" lastBlockId="7.[121,759,181,237]" lastPageId="7" lastPageNumber="4829" pageId="6" pageNumber="4828">
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<materialsCitation id="3B343C844424FFDAB32CF89FFD26FF47" collectionCode="FT, WWCN" country="China" lastPageId="7" lastPageNumber="4829" location="China" pageId="6" pageNumber="4828" specimenCode="FT135WT, WWCN00000000" specimenCount="1" typeStatus="holotype">
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The
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<typeStatus id="54E7887B4424FFDBB365F89FFC1BF8CD" box="[885,932,1871,1895]" pageId="6" pageNumber="4828">type</typeStatus>
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strain,
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<specimenCode id="DBFA9EA24424FFDBB419F89FFBCBF8F1" box="[1033,1140,1869,1895]" pageId="6" pageNumber="4828">FT135WT</specimenCode>
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(=GDMCC 1.1745
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<superScript id="7C299B914424FFDBB548F89DFADDF8F1" attach="none" box="[1368,1378,1869,1883]" fontSize="6" pageId="6" pageNumber="4828">T</superScript>
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=KACC 21659
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<superScript id="7C299B914424FFDBB36CF8BCFC39F8D0" attach="none" box="[892,902,1900,1914]" fontSize="6" pageId="6" pageNumber="4828">T</superScript>
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), was isolated from a subtropical stream in PR
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<collectingCountry id="F34B76494424FFDBB563F8BDFA08F82F" box="[1395,1463,1901,1925]" name="China" pageId="6" pageNumber="4828">China</collectingCountry>
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. The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequence and the draft genome of strain FT135WT are
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<accessionNumber id="940FAB3A4425FFDAB08FFF05FEA7FF47" box="[159,280,213,237]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MN865820" pageId="7" pageNumber="4829">MN865820</accessionNumber>
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and
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<specimenCode id="DBFA9EA24425FFDAB15CFF05FDB2FF47" box="[332,525,213,237]" pageId="7" pageNumber="4829">WWCN00000000</specimenCode>
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, respectively.
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</materialsCitation>
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |