263 lines
24 KiB
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263 lines
24 KiB
XML
<document id="4D589BFD1CD558AEEE934B311F198A32" ID-DOI="10.1099/ijsem.0.004107" ID-ISSN="1466-5034" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644597203828" checkinUser="felipe" docAuthor="Zheng, Jinshui, Wittouck, Stijn, Salvetti, Elisa, Franz, Charles M. A. P., Harris, Hugh M. B., Mattarelli, Paola, O’Toole, Paul W., Pot, Bruno, Vandamme, Peter, Walter, Jens, Watanabe, Koichi, Wuyts, Sander, Felis, Giovanna E., Gänzle, Michael G. & Lebeer, Sarah" docDate="2020" docId="0389878AFF9E2162D94EF9E0FA806176" docLanguage="en" docName="IntJSystEvolMicrobiol.70.4.2782-2858.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (4)" docSource="http://dx.doi.org/10.1099/ijsem.0.004107" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Amylolactobacillus amylotrophicus Zheng, Wittouck, Salvetti, Franz, Harris, Mattarelli, O’Toole, Pot, Vandamme, Walter, Watanabe, Wuyts, Felis, Gänzle & Lebeer, 2020, COMB. NOV." docType="treatment" docVersion="4" lastPageNumber="2801" masterDocId="FFB0FFF2FF8D2171D937FF96FFAF6267" masterDocTitle="A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae" masterLastPageNumber="2858" masterPageNumber="2782" pageNumber="2801" updateTime="1699295455673" updateUser="plazi">
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<mods:title id="210AAB20C0CCFB1D7C84366581B96715">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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<mods:namePart id="2C2D9BC2881BFB58CB3A59568F5ECD50">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="55680198D19E58D367BBB505C745EDB7">Wittouck, Stijn</mods:namePart>
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<mods:namePart id="3C243103F5DC5CC964B8C05DD4EBFD82">Salvetti, Elisa</mods:namePart>
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<mods:namePart id="10D39F2E8E1408E234F76FEBF63BA59A">Franz, Charles M. A. P.</mods:namePart>
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<mods:namePart id="3FC30F8F06A41D0B5BEBF0574E049CFC">O’Toole, Paul W.</mods:namePart>
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<mods:namePart id="8E31576EE9725C34C993B599CAC2580C">Pot, Bruno</mods:namePart>
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<mods:namePart id="2ACC9C71E94A454F648B3CF760D839B2">Walter, Jens</mods:namePart>
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<mods:namePart id="87D50EFFE8CE5AC2D105002281467B1D">Watanabe, Koichi</mods:namePart>
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<mods:namePart id="344023C43B2656F0413A88476DE38D46">Wuyts, Sander</mods:namePart>
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<mods:namePart id="8A53E47D93535C4FC8C1A96B2652FB3B">Felis, Giovanna E.</mods:namePart>
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<mods:namePart id="16F43FAEF2CAD36382193580F19B0797">Gänzle, Michael G.</mods:namePart>
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<mods:namePart id="14E2CFC3CB7C18723C05DB184F5B4AD7">Lebeer, Sarah</mods:namePart>
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<mods:title id="B0FD372792F346267FF4E92169F73E99">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:date id="BF0A6A1F456C331FBA9F0FF7178EEC0D">2020</mods:date>
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<mods:number id="9786915D465A9D3D715E77A089CD35F1">2020-04-01</mods:number>
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<mods:number id="D1A77B5E8D6C9A6EA3947DE92521A85F">70</mods:number>
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<treatment id="0389878AFF9E2162D94EF9E0FA806176" ID-DOI="http://doi.org/10.5281/zenodo.6309577" ID-Zenodo-Dep="6309577" LSID="urn:lsid:plazi:treatment:0389878AFF9E2162D94EF9E0FA806176" httpUri="http://treatment.plazi.org/id/0389878AFF9E2162D94EF9E0FA806176" lastPageNumber="2801" pageId="19" pageNumber="2801">
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<subSubSection id="C33A6517FF9E2162D94EF9E0FD8664DF" pageId="19" pageNumber="2801" type="nomenclature">
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<paragraph id="8B9F369CFF9E2162D94EF9E0FD8664DF" blockId="19.[121,766,1654,1956]" pageId="19" pageNumber="2801">
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<heading id="D0D781F0FF9E2162D94EF9E0FD8664DF" allCaps="true" bold="true" fontSize="12" level="2" pageId="19" pageNumber="2801" reason="3">
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<emphasis id="B954EA8EFF9E2162D94EF9E0FD8664DF" bold="true" pageId="19" pageNumber="2801">
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DESCRIPTION OF
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<taxonomicName id="4C204D1FFF9E2162D845F9E0FED364DF" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Amylolactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="19" pageNumber="2801" phylum="Firmicutes" rank="species" species="amylotrophicus" status="comb. nov.">
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<emphasis id="B954EA8EFF9E2162D845F9E0FED364DF" bold="true" italics="true" pageId="19" pageNumber="2801">AMYLOLACTOBACILLUS AMYLOTROPHICUS</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A26757F5FF9E2162D8B3F90DFD8664DF" box="[388,553,1691,1720]" pageId="19" pageNumber="2801" rank="species">COMB. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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<subSubSection id="C33A6517FF9E2162D94EF953FEEE6530" pageId="19" pageNumber="2801" type="etymology">
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<paragraph id="8B9F369CFF9E2162D94EF953FEEE6530" blockId="19.[121,766,1654,1956]" pageId="19" pageNumber="2801">
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<taxonomicName id="4C204D1FFF9E2162D94EF953FDAA64BA" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[121,517,1733,1757]" class="Bacilli" family="Lactobacillaceae" genus="Amylolactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="19" pageNumber="2801" phylum="Firmicutes" rank="species" species="amylotrophicus">
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<emphasis id="B954EA8EFF9E2162D94EF953FDAA64BA" box="[121,517,1733,1757]" italics="true" pageId="19" pageNumber="2801">Amylolactobacillus amylotrophicus</emphasis>
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</taxonomicName>
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(a.my.lo.tro’phi.cus. Gr. neut. n.
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<emphasis id="B954EA8EFF9E2162D836F975FEFF649C" box="[257,336,1763,1787]" italics="true" pageId="19" pageNumber="2801">amylon</emphasis>
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starch; N.L. masc. adj.
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<emphasis id="B954EA8EFF9E2162DB60F975FD16649C" box="[599,697,1763,1787]" italics="true" pageId="19" pageNumber="2801">trophicus</emphasis>
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from Gr. masc. adj.
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<emphasis id="B954EA8EFF9E2162D82AF894FED0657D" box="[285,383,1794,1818]" italics="true" pageId="19" pageNumber="2801">trophikos</emphasis>
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nursing, tending; N.L. masc. adj.
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<taxonomicName id="4C204D1FFF9E2162D94EF8B7FEB5655E" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[121,282,1825,1849]" class="Bacilli" family="Lactobacillaceae" genus="Amylolactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="19" pageNumber="2801" phylum="Firmicutes" rank="species" species="amylotrophicus">
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<emphasis id="B954EA8EFF9E2162D94EF8B7FEB5655E" box="[121,282,1825,1849]" italics="true" pageId="19" pageNumber="2801">amylotrophicus</emphasis>
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</taxonomicName>
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growing on starch, pertaining to the ability to ferment starch).
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FF9E2162D94EF8F8FBE66020" pageId="19" pageNumber="2801" type="description">
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<paragraph id="8B9F369CFF9E2162D94EF8F8FF6B65C4" blockId="19.[121,766,1654,1956]" pageId="19" pageNumber="2801">
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Basonym:
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<taxonomicName id="4C204D1FFF9E2162D9D8F8FBFF0365C3" authority="Naser et al. 2006" authorityName="Naser" authorityYear="2006" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="19" pageNumber="2801" phylum="Firmicutes" rank="species" species="amylotrophicus">
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<emphasis id="B954EA8EFF9E2162D9D8F8FBFD8765E2" box="[239,552,1901,1925]" italics="true" pageId="19" pageNumber="2801">Lactobacillus amylotrophicus</emphasis>
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Naser
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<emphasis id="B954EA8EFF9E2162DB4CF8F8FD0265E2" box="[635,685,1901,1925]" italics="true" pageId="19" pageNumber="2801">et al</emphasis>
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. 2006, 2526
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</taxonomicName>
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<superScript id="7C559BD4FF9E2162D99BF81DFF1165FE" attach="none" box="[172,190,1931,1945]" fontSize="6" pageId="19" pageNumber="2801">VP</superScript>
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.
|
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</paragraph>
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<paragraph id="8B9F369CFF9E2162DA0BFF21FC4B63EC" blockId="19.[826,1468,183,786]" pageId="19" pageNumber="2801">
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The classification of
|
||
<taxonomicName id="4C204D1FFF9E2162DD28FF21FB4A62A8" box="[1055,1253,183,207]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="19" pageNumber="2801" phylum="Firmicutes" rank="species" species="amylotrophicus">
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<emphasis id="B954EA8EFF9E2162DD28FF21FB4A62A8" box="[1055,1253,183,207]" italics="true" pageId="19" pageNumber="2801">A. amylotrophicus</emphasis>
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</taxonomicName>
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as separate species was disputed as the first published genome sequence of the
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<typeStatus id="549B883EFF9E2162DA0BFF60FCC46369" box="[828,875,246,270]" pageId="19" pageNumber="2801">type</typeStatus>
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strain of
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<taxonomicName id="4C204D1FFF9E2162DAEEFF60FB30636A" box="[985,1183,245,269]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="19" pageNumber="2801" phylum="Firmicutes" rank="species" species="amylotrophicus">
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<emphasis id="B954EA8EFF9E2162DAEEFF60FB30636A" box="[985,1183,245,269]" italics="true" pageId="19" pageNumber="2801">A. amylotrophicus</emphasis>
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</taxonomicName>
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was virtually identical to the sequence of
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<taxonomicName id="4C204D1FFF9E2162DACEFE83FB0F634A" authorityName="Nakamura and Crowell" authorityYear="1981" box="[1017,1184,277,301]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="19" pageNumber="2801" phylum="Firmicutes" rank="species" species="amylophilus">
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||
<emphasis id="B954EA8EFF9E2162DACEFE83FB0F634A" box="[1017,1184,277,301]" italics="true" pageId="19" pageNumber="2801">A. amylophilus</emphasis>
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</taxonomicName>
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||
[
|
||
<bibRefCitation id="EFB14B6DFF9E2162DD87FE83FB60634A" author="Zheng J & Ruan L & Sun M & Ganzle M." box="[1200,1231,277,301]" pageId="19" pageNumber="2801" pagination="7233 - 7243" refId="ref60299" refString="14. Zheng J, Ruan L, Sun M, Ganzle M. A genomic view of lactobacilli and pediococci demonstrates that phylogeny matches ecology and physiology. Appl Environ Microbiol 2015; 81: 7233 - 7243." type="journal article" year="2015">14</bibRefCitation>
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||
,
|
||
<bibRefCitation id="EFB14B6DFF9E2162DDEAFE83FB53634A" author="Sun Z & Harris HMB & McCann A & Guo C & Argimon S" box="[1245,1276,277,301]" pageId="19" pageNumber="2801" pagination="8322" refId="ref60381" refString="16. Sun Z, Harris HMB, McCann A, Guo C, Argimon S et al. Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera. Nat Commun 2015; 6: 8322." type="journal article" year="2015">16</bibRefCitation>
|
||
]. The 16S rRNA,
|
||
<emphasis id="B954EA8EFF9E2162DA0BFEA2FCC1632B" box="[828,878,308,332]" italics="true" pageId="19" pageNumber="2801">pheS</emphasis>
|
||
and
|
||
<emphasis id="B954EA8EFF9E2162DA90FEA3FC71632B" box="[935,990,309,332]" italics="true" pageId="19" pageNumber="2801">rpoA</emphasis>
|
||
sequences provided with the new description, however, clearly differentiate
|
||
<taxonomicName id="4C204D1FFF9E2162DD8EFEC2FAD1630B" box="[1209,1406,340,364]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="19" pageNumber="2801" phylum="Firmicutes" rank="species" species="amylotrophicus">
|
||
<emphasis id="B954EA8EFF9E2162DD8EFEC2FAD1630B" box="[1209,1406,340,364]" italics="true" pageId="19" pageNumber="2801">A. amylotrophicus</emphasis>
|
||
</taxonomicName>
|
||
from
|
||
<taxonomicName id="4C204D1FFF9E2162DA0BFEE2FC7263EC" authorityName="Nakamura and Crowell" authorityYear="1981" box="[828,989,371,395]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="19" pageNumber="2801" phylum="Firmicutes" rank="species" species="amylophilus">
|
||
<emphasis id="B954EA8EFF9E2162DA0BFEE2FC7263EC" box="[828,989,371,395]" italics="true" pageId="19" pageNumber="2801">A. amylophilus</emphasis>
|
||
</taxonomicName>
|
||
.
|
||
</paragraph>
|
||
<paragraph id="8B9F369CFF9E2162DA0BFE34FC29607F" blockId="19.[826,1468,183,786]" pageId="19" pageNumber="2801">
|
||
Phenotypic properties that differentiate
|
||
<taxonomicName id="4C204D1FFF9E2162DDC0FE34FA1463DD" box="[1271,1467,418,442]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="19" pageNumber="2801" phylum="Firmicutes" rank="species" species="amylotrophicus">
|
||
<emphasis id="B954EA8EFF9E2162DDC0FE34FA1463DD" box="[1271,1467,418,442]" italics="true" pageId="19" pageNumber="2801">A. amylotrophicus</emphasis>
|
||
</taxonomicName>
|
||
from
|
||
<taxonomicName id="4C204D1FFF9E2162DA4CFE54FBB163BE" authorityName="Nakamura and Crowell" authorityYear="1981" box="[891,1054,449,473]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="19" pageNumber="2801" phylum="Firmicutes" rank="species" species="amylophilus">
|
||
<emphasis id="B954EA8EFF9E2162DA4CFE54FBB163BE" box="[891,1054,449,473]" italics="true" pageId="19" pageNumber="2801">A. amylophilus</emphasis>
|
||
</taxonomicName>
|
||
include the production of acid from cellobiose and salicin [
|
||
<bibRefCitation id="EFB14B6DFF9E2162DD1EFE77FBF9639E" author="Naser SM & Vancanneyt M & Snauwaert C & Vrancken G & Hoste B" box="[1065,1110,481,505]" pageId="19" pageNumber="2801" pagination="2523 - 2527" refId="ref64460" refString="112. Naser SM, Vancanneyt M, Snauwaert C, Vrancken G, Hoste B et al. Reclassification of Lactobacillus amylophilus LMG 11400 and NRRL B- 4435 as Lactobacillus amylotrophicus sp. nov. Int J Syst Evol Microbiol 2006; 56: 2523 - 2527." type="journal article" year="2006">112</bibRefCitation>
|
||
]. The mol% G+C content of DNA is 43.5.
|
||
</paragraph>
|
||
<paragraph id="8B9F369CFF9E2162DA0BFDB9FBE66020" blockId="19.[826,1468,183,786]" box="[828,1097,559,583]" pageId="19" pageNumber="2801">Isolated from corn silage.</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33A6517FF9E2162DA0BFDCBFB8360F3" pageId="19" pageNumber="2801" type="materials_examined">
|
||
<paragraph id="8B9F369CFF9E2162DA0BFDCBFB8360F3" blockId="19.[826,1468,183,786]" pageId="19" pageNumber="2801">
|
||
<materialsCitation id="3B483CC1FF9E2162DA0BFDCBFB8360F3" accessionNumber="LMG 11400, DSM 20534" collectionCode="LMG, T, DSM, NRRL" pageId="19" pageNumber="2801" specimenCode="JCM 1124" specimenCount="1" typeStatus="holotype">
|
||
The
|
||
<typeStatus id="549B883EFF9E2162DA4EFDC8FC076011" box="[889,936,606,630]" pageId="19" pageNumber="2801">type</typeStatus>
|
||
strain is
|
||
<collectionCode id="ED31AE59FF9E2162DD02FDCBFBC06012" box="[1077,1135,605,629]" country="Belgium" httpUri="http://grbio.org/cool/0fkg-rcci" name="Belgian Coordinated Collections of Microorganisms/ LMG Bacteria Collection" pageId="19" pageNumber="2801">LMG</collectionCode>
|
||
11400
|
||
<superScript id="7C559BD4FF9E2162DDF2FDCAFB60600D" attach="none" box="[1221,1231,604,618]" fontSize="6" pageId="19" pageNumber="2801">
|
||
<collectionCode id="ED31AE59FF9E2162DDF2FDCAFB60600D" box="[1221,1231,604,618]" name="Tavera, Department of Geology and Geophysics" pageId="19" pageNumber="2801">T</collectionCode>
|
||
</superScript>
|
||
=
|
||
<collectionCode id="ED31AE59FF9E2162DDEAFDCBFAB86012" box="[1245,1303,605,629]" country="Germany" httpUri="http://grbio.org/cool/4644-42cg" name="Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH" pageId="19" pageNumber="2801">DSM</collectionCode>
|
||
20534
|
||
<superScript id="7C559BD4FF9E2162DC59FDCAFAD7600D" attach="right" box="[1390,1400,604,618]" fontSize="6" pageId="19" pageNumber="2801">
|
||
<collectionCode id="ED31AE59FF9E2162DC59FDCAFAD7600D" box="[1390,1400,604,618]" name="Tavera, Department of Geology and Geophysics" pageId="19" pageNumber="2801">T</collectionCode>
|
||
</superScript>
|
||
=
|
||
<specimenCode id="DB869EE7FF9E2162DCB1FDCBFCC060F2" collectionCode="JCM" country="Japan" httpUri="http://grbio.org/cool/iyky-md37" name="Japan Collection of Microorganisms" pageId="19" pageNumber="2801">JCM 1124</specimenCode>
|
||
<superScript id="7C559BD4FF9E2162DA58FDEDFCD660EE" attach="none" box="[879,889,635,649]" fontSize="6" pageId="19" pageNumber="2801">
|
||
<collectionCode id="ED31AE59FF9E2162DA58FDEDFCD660EE" box="[879,889,635,649]" name="Tavera, Department of Geology and Geophysics" pageId="19" pageNumber="2801">T</collectionCode>
|
||
</superScript>
|
||
=
|
||
<collectionCode id="ED31AE59FF9E2162DAB1FDEBFC6460F3" box="[902,971,637,660]" pageId="19" pageNumber="2801">NRRL</collectionCode>
|
||
B-4436
|
||
<superScript id="7C559BD4FF9E2162DD29FDEDFB8960EE" attach="right" box="[1054,1062,635,649]" fontSize="6" pageId="19" pageNumber="2801">
|
||
<collectionCode id="ED31AE59FF9E2162DD29FDEDFB8960EE" box="[1054,1062,635,649]" name="Tavera, Department of Geology and Geophysics" pageId="19" pageNumber="2801">T</collectionCode>
|
||
</superScript>
|
||
.
|
||
</materialsCitation>
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33A6517FF9E2162DA0BFD3DFC796084" pageId="19" pageNumber="2801" type="description">
|
||
<paragraph id="8B9F369CFF9E2162DA0BFD3DFC796084" blockId="19.[826,1468,183,786]" pageId="19" pageNumber="2801">Genome sequence accession number: not available at the time of publication.</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33A6517FF9E2162DA0BFD6FFA806176" box="[828,1327,761,786]" pageId="19" pageNumber="2801" type="materials_examined">
|
||
<paragraph id="8B9F369CFF9E2162DA0BFD6FFA806176" blockId="19.[826,1468,183,786]" box="[828,1327,761,786]" pageId="19" pageNumber="2801">
|
||
16S rRNA gene accession number:
|
||
<accessionNumber id="9473AB7FFF9E2162DD86FD6FFA846176" box="[1201,1323,761,785]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/AM236149" pageId="19" pageNumber="2801">
|
||
<collectionCode id="ED31AE59FF9E2162DD86FD6FFB736176" box="[1201,1244,761,785]" country="Australia" name="Australian Museum" pageId="19" pageNumber="2801" type="Museum">AM</collectionCode>
|
||
236149
|
||
</accessionNumber>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |