271 lines
29 KiB
XML
271 lines
29 KiB
XML
<document id="A297042751EAE220418DFC6F0E716152" ID-CLB-Dataset="3928" ID-DOI="10.11646/phytotaxa.523.2.2" ID-GBIF-Dataset="dbd3b48a-e38e-4fb7-a5cb-84443130c3da" ID-ISSN="1179-3163" ID-Zenodo-Dep="5585415" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1634711534918" checkinUser="plazi" docAuthor="Safi, Atena, Mehrabi-Koushki, Mehdi & Farokhinejad, Reza" docDate="2021" docId="C45BC820FFD3294371CFFCEEB3C2FEA1" docLanguage="en" docName="phytotaxa.523.2.2.pdf" docOrigin="Phytotaxa 523 (2)" docStyle="DocumentStyle:96748F8F1B6C902996E134952A3A36B9.7:Phytotaxa.2014-.journal_article" docStyleId="96748F8F1B6C902996E134952A3A36B9" docStyleName="Phytotaxa.2014-.journal_article" docStyleVersion="7" docTitle="Plenodomus dezfulensis M. Mehrabi-Koushki, A. Safi & R. Farokhinejad 2021, sp. nov." docType="treatment" docVersion="5" lastPageNumber="147" masterDocId="3862B058FFD529447147FFBAB110FF85" masterDocTitle="Plenodomus dezfulensis sp. nov. causing leaf spot of Rapeseed in Iran" masterLastPageNumber="154" masterPageNumber="141" pageNumber="147" updateTime="1699460358947" updateUser="ExternalLinkService" zenodo-license-figures="UNSPECIFIED" zenodo-license-treatments="UNSPECIFIED">
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<mods:mods id="8FB6960A007FFE0A879F3655441DF72B" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="697694A543C3F34D970EBAF7BCE4332C">
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<mods:title id="58216E56417FCA2017027825D3B2C4DF">Plenodomus dezfulensis sp. nov. causing leaf spot of Rapeseed in Iran</mods:title>
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</mods:titleInfo>
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<mods:name id="D31ED7C1A7A77A441897055488700305" type="personal">
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<mods:roleTerm id="3C5CC1F7B56FB7F9332F47107A4525BF">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="ED23700DC30BDB4BF7C547F9B3C84B48">Safi, Atena</mods:namePart>
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<mods:nameIdentifier id="3B1C303809A6EC43CE586CF584EF9749" type="ORCID">0000-0003-3650-3032</mods:nameIdentifier>
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<mods:affiliation id="DA270860DFF6CC7752899E1827F062AA">Department of Plant Protection, Faculty of Agriculture, Shahid Chamran University of Ahvaz, Ahvaz, Khuzestan Province, Iran & atenasafiii @ gmail. com; https: // orcid. org / 0000 - 0003 - 3650 - 3032</mods:affiliation>
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<mods:nameIdentifier id="4292A6EF32767F452F121D12B09AD6A1" type="email">atenasafiii@gmail.com</mods:nameIdentifier>
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</mods:name>
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<mods:name id="B84E8B43CFF0E789C089642C7E67DC69" type="personal">
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<mods:roleTerm id="26FCF03EC9A252900228F9FC49B14F13">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="10331824EDF8C99CD2E0BF8A115C16EA">Mehrabi-Koushki, Mehdi</mods:namePart>
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<mods:nameIdentifier id="E902362F4827E29075415602351926C2" type="ORCID">0000-0002-1893-1458</mods:nameIdentifier>
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<mods:affiliation id="B7B0C7654DCA39049D1B3DF6F5F2C4E1">Department of Plant Protection, Faculty of Agriculture, Shahid Chamran University of Ahvaz, Ahvaz, Khuzestan Province, Iran & Biotechnology and Bioscience Research Center, Shahid Chamran University of Ahvaz, Ahvaz, Iran & mhdmhrb @ scu. ac. ir; mhdmhrb @ gmail. com; https: // orcid. org / 0000 - 0002 - 1893 - 1458</mods:affiliation>
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<mods:nameIdentifier id="B665CD42A8449DF9C6FA1CAC32E297A1" type="email">mhdmhrb@scu.ac.ir</mods:nameIdentifier>
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</mods:name>
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<mods:name id="9A4933E49D27E575EF19387721283CE5" type="personal">
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<mods:roleTerm id="D76A29BDCF18B35FA8B57C43E03C7D99">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="E95CCBFDEBE2134F6F82275ADC50A821">Farokhinejad, Reza</mods:namePart>
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<mods:nameIdentifier id="430EE64D125922002AF6850431F29750" type="ORCID">0000-0001-6872-6420</mods:nameIdentifier>
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<mods:affiliation id="AFC08C3FC3F6F4AC2BF55438BE51297A">Department of Plant Protection, Faculty of Agriculture, Shahid Chamran University of Ahvaz, Ahvaz, Khuzestan Province, Iran & farokhi _ reza @ yahoo. com; https: // orcid. org / 0000 - 0001 - 6872 - 6420</mods:affiliation>
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<mods:nameIdentifier id="2A2BC3801D5D4F8BC869E3BF0275C5A0" type="email">farokhi_reza@yahoo.com</mods:nameIdentifier>
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<mods:typeOfResource id="9022B4A8FD1919EA3B2F4E75396CCFD4">text</mods:typeOfResource>
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<mods:title id="8F9DB22133944338162D4C4464E5B603">Phytotaxa</mods:title>
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</mods:titleInfo>
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<mods:part id="CA41180531F2054E787ABA296840177D">
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<mods:date id="63FBF033E3393875156916E805392D78">2021</mods:date>
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<mods:number id="AA9FFF06A3EC6A561407C00ACB05355A">2021-10-20</mods:number>
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<mods:detail id="0F92F13193B4FB8FDC0E2BD2C25DE466" type="volume">
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<mods:number id="2ED1EFDF16E5124BE38065FB4818E49D">523</mods:number>
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<mods:detail id="544DF18E86F9BA1507567CAFC0A9BC76" type="issue">
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<mods:classification id="CC5DBB75080D0FE78C9E82682B79F0DB">journal article</mods:classification>
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<mods:identifier id="A9B30367DD250F59016968611515DF16" type="CLB-Dataset">3928</mods:identifier>
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<mods:identifier id="8E260394B4BFFA455A8364C4E5E84AC0" type="DOI">10.11646/phytotaxa.523.2.2</mods:identifier>
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<mods:identifier id="C4FBCA9257F08EAEAAB3B0C450157372" type="GBIF-Dataset">dbd3b48a-e38e-4fb7-a5cb-84443130c3da</mods:identifier>
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<mods:identifier id="2FABACE354465FF5B59D414C350DC621" type="ISSN">1179-3163</mods:identifier>
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<mods:identifier id="36C35D30B9F485A2599E4B50D1059781" type="Zenodo-Dep">5585415</mods:identifier>
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<treatment id="C45BC820FFD3294371CFFCEEB3C2FEA1" ID-DOI="http://doi.org/10.5281/zenodo.5592618" ID-GBIF-Taxon="189159663" ID-Zenodo-Dep="5592618" LSID="urn:lsid:plazi:treatment:C45BC820FFD3294371CFFCEEB3C2FEA1" httpUri="http://treatment.plazi.org/id/C45BC820FFD3294371CFFCEEB3C2FEA1" lastPageId="7" lastPageNumber="147" pageId="6" pageNumber="147">
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<subSubSection id="04E82ABDFFD3294271CFFCEEB594FCEB" box="[136,1156,852,879]" pageId="6" pageNumber="147" type="nomenclature">
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<paragraph id="4C4D7936FFD3294271CFFCEEB594FCEB" blockId="6.[136,1156,852,879]" box="[136,1156,852,879]" pageId="6" pageNumber="147">
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<heading id="1705CE5AFFD3294271CFFCEEB594FCEB" box="[136,1156,852,879]" fontSize="11" level="2" pageId="6" pageNumber="147" reason="3">
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||
<taxonomicName id="8BF202B5FFD3294271CFFCEEB2DAFCEB" ID-CoL="9ZDPB" authority="M. Mehrabi-Koushki, A. Safi & R. Farokhinejad" authorityName="M. Mehrabi-Koushki, A. Safi & R. Farokhinejad" authorityYear="2021" box="[136,970,852,879]" class="Dothideomycetes" family="Leptosphaeriaceae" genus="Plenodomus" kingdom="Fungi" order="Pleosporales" pageId="6" pageNumber="147" phylum="Ascomycota" rank="species" species="dezfulensis" status="sp. nov.">
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<emphasis id="7E86A524FFD3294271CFFCEEB08EFCEA" bold="true" box="[136,414,852,879]" italics="true" pageId="6" pageNumber="147">Plenodomus dezfulensis</emphasis>
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M. Mehrabi-Koushki, A. Safi & R. Farokhinejad
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</taxonomicName>
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,
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<emphasis id="7E86A524FFD329427292FCEFB53AFCEB" box="[981,1066,853,878]" italics="true" pageId="6" pageNumber="147">
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<taxonomicNameLabel id="65B5185FFFD329427292FCEFB53AFCEB" box="[981,1066,853,878]" pageId="6" pageNumber="147" rank="species">sp. nov.</taxonomicNameLabel>
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</emphasis>
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||
(
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<figureCitation id="D4C965B3FFD32942757FFCEEB56BFCEB" box="[1080,1147,852,878]" captionStart="FIGURE 3" captionStartId="7.[136,229,1968,1990]" captionTargetBox="[169,1422,334,1931]" captionTargetId="figure-96@7.[151,1436,317,1943]" captionTargetPageId="7" captionText="FIGURE 3. Plenodomus dezfulensis (IRAN 4159C). a–b. Colony on OA (top and reverse). c–d. Colony on PDA (top and reverse). e–g. Pycnidia. h. Section of pycnidia. i–j. pycnidial wall and conidiogenous cells (arrows). k. Chlamydospores. l–m. Conidia. Scale bars: f–g = 200 μm; h = 105 μm; i–m = 20 μm." figureDoi="http://doi.org/10.5281/zenodo.5585421" httpUri="https://zenodo.org/record/5585421/files/figure.png" pageId="6" pageNumber="147">Fig. 3</figureCitation>
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)
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</heading>
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||
</paragraph>
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||
</subSubSection>
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||
<subSubSection id="04E82ABDFFD3294271CFFCC2B0B0FC17" box="[136,416,888,915]" pageId="6" pageNumber="147" type="description">
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||
<paragraph id="4C4D7936FFD3294271CFFCC2B0B0FC17" blockId="6.[136,416,888,915]" box="[136,416,888,915]" pageId="6" pageNumber="147">
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<emphasis id="7E86A524FFD3294271CFFCC2B01BFC17" bold="true" box="[136,267,888,914]" pageId="6" pageNumber="147">MycoBank</emphasis>
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: MB 839660
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</paragraph>
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</subSubSection>
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<subSubSection id="04E82ABDFFD3294271CFFC79B525FC7B" pageId="6" pageNumber="147" type="materials_examined">
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<paragraph id="4C4D7936FFD3294271CFFC79B525FC7B" blockId="6.[136,1452,963,1022]" pageId="6" pageNumber="147">
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<materialsCitation id="FC9A736BFFD3294271CFFC79B525FC7B" ID-GBIF-Occurrence="3391153301" collectingDate="2019-12" collectionCode="IRAN" collectorName="A. Safi" country="Iran" location="Dezful" municipality="Dezful" pageId="6" pageNumber="147" specimenCode="IRAN 18084F" specimenCount="1" stateProvince="Khuzestan Province" typeStatus="holotype">
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<emphasis id="7E86A524FFD3294271CFFC79B1F1FC5C" bold="true" box="[136,225,963,985]" italics="true" pageId="6" pageNumber="147">
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<typeStatus id="9349C794FFD3294271CFFC79B1F1FC5C" box="[136,225,963,985]" pageId="6" pageNumber="147" type="holotype">Holotype</typeStatus>
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||
</emphasis>
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||
:
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<collectingCountry id="34E539A6FFD3294271ABFC7EB03AFC5C" box="[236,298,964,985]" name="Iran" pageId="6" pageNumber="147">IRAN</collectingCountry>
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.
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<collectingRegion id="8E36B7D4FFD329427076FC7EB0E3FC5F" box="[305,499,964,986]" country="Iran" name="Khuzestan" pageId="6" pageNumber="147">Khuzestan Province</collectingRegion>
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;
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<collectingMunicipality id="AC29E34CFFD3294270BCFC7EB32CFC5F" box="[507,572,964,986]" pageId="6" pageNumber="147">Dezful</collectingMunicipality>
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(Safiabad), isolated from leaf spot of
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<taxonomicName id="8BF202B5FFD3294272D9FC7EB451FC5F" authority="subsp. napus" box="[926,1345,964,986]" class="Magnoliopsida" family="Brassicaceae" genus="Brassica" kingdom="Plantae" order="Brassicales" pageId="6" pageNumber="147" phylum="Tracheophyta" rank="subSpecies" species="napus" subSpecies="napus">
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<emphasis id="7E86A524FFD3294272D9FC7EB53FFC5C" box="[926,1071,964,985]" italics="true" pageId="6" pageNumber="147">Brassica napus</emphasis>
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subsp.
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<emphasis id="7E86A524FFD329427532FC7EB5BEFC5C" box="[1141,1198,964,985]" italics="true" pageId="6" pageNumber="147">napus</emphasis>
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(Brassicaceae)
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</taxonomicName>
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,
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<date id="384C5FF6FFD32942740EFC7EB1FFFC78" pageId="6" pageNumber="147" value="2019-12">
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<collectingDate id="2808A61EFFD32942740EFC7EB1FFFC78" pageId="6" pageNumber="147" value="2019-12">December 2019</collectingDate>
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</date>
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,
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<collectorName id="E1071CE0FFD3294271BFFC52B02CFC7B" box="[248,316,1000,1022]" pageId="6" pageNumber="147">A. Safi</collectorName>
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(holotype,
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<specimenCode id="1C54D14DFFD3294270EDFC52B327FC78" box="[426,567,1000,1021]" pageId="6" pageNumber="147">IRAN 18084F</specimenCode>
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; ex-type cultures, IRAN 4159C = SCUA-Ahm-S41).
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</materialsCitation>
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</paragraph>
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</subSubSection>
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<subSection id="257D60DDFFD3294371CFFB96B3C2FEA1" lastPageId="7" lastPageNumber="148" pageId="6" pageNumber="147" type="multiple">
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<subSubSection id="04E82ABDFFD3294271CFFB96B49BFBC3" box="[136,1419,1068,1095]" pageId="6" pageNumber="147" type="etymology">
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<paragraph id="4C4D7936FFD3294271CFFB96B49BFBC3" blockId="6.[136,1419,1068,1095]" box="[136,1419,1068,1095]" pageId="6" pageNumber="147">
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<emphasis id="7E86A524FFD3294271CFFB96B013FBC2" bold="true" box="[136,259,1068,1095]" italics="true" pageId="6" pageNumber="147">Etymology</emphasis>
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: Species epithet refers to Dezful County in
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<collectingRegion id="8E36B7D4FFD3294273A9FB96B2C0FBC3" box="[750,976,1068,1094]" country="Iran" name="Khuzestan" pageId="6" pageNumber="147">Khuzestan Province</collectingRegion>
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(
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<collectingCountry id="34E539A6FFD329427299FB96B500FBC3" box="[990,1040,1068,1094]" name="Iran" pageId="6" pageNumber="147">Iran</collectingCountry>
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), where the fungus was collected.
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</paragraph>
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</subSubSection>
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<subSubSection id="04E82ABDFFD3294271FAFBEAB57EFA57" pageId="6" pageNumber="147" type="description">
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<paragraph id="4C4D7936FFD3294271FAFBEAB57EFA57" blockId="6.[136,1452,1104,2067]" pageId="6" pageNumber="147">
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<emphasis id="7E86A524FFD3294271FAFBEAB32DFBEF" bold="true" box="[189,573,1104,1130]" pageId="6" pageNumber="147">Asexual morph: Coelomycetous</emphasis>
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.
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<emphasis id="7E86A524FFD329427309FBEAB3F3FBEE" bold="true" box="[590,739,1104,1131]" italics="true" pageId="6" pageNumber="147">Conidiomata</emphasis>
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pycnidial, scattered and irregular, solitary or confluent, partly submerged in the agar, globose to subglobose, with hyphal outgrowths, ostiolate, papillate, brown to tan brown with a darker border, thick-walled, (89–)102–271.4 56.3–238(–263.7) µm, 95% confidence limits = 158.1–182.2 109.8– 129.7 µm, (±
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<collectingRegion id="8E36B7D4FFD329427003FB06B078FB53" box="[324,360,1212,1238]" country="Serbia" name="Sid" pageId="6" pageNumber="147">SD</collectingRegion>
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= 170.1 ± 46.6 119.8 ± 38.6 µm, n= 60).
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<emphasis id="7E86A524FFD32942722AFB06B503FB52" bold="true" box="[877,1043,1212,1239]" italics="true" pageId="6" pageNumber="147">Pycnidial wall</emphasis>
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variable in thickness, composed of several layers with thick-walled cells of textura angularis, somewhat elongated cells at the base of the pycnidia.
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<emphasis id="7E86A524FFD3294271CFFABEB1F4FA9A" bold="true" box="[136,228,1284,1311]" italics="true" pageId="6" pageNumber="147">Ostioles</emphasis>
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slightly papillate, with a narrow pore or opening via a rupture.
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<emphasis id="7E86A524FFD3294272E7FABEB59AFA9B" bold="true" box="[928,1162,1284,1310]" pageId="6" pageNumber="147">Conidiogenous cells</emphasis>
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hyaline, smooth, ovoid to doliiform, 3.5–5.2 2.5–4 µm.
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<emphasis id="7E86A524FFD3294270A2FA92B354FAC7" bold="true" box="[485,580,1320,1346]" pageId="6" pageNumber="147">Conidia</emphasis>
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ellipsoidal to oblong, rarely allantoid, straight, sometime very slightly curved, hyaline but greyish brown in mass, guttulate near each end, rounded at both ends, aseptate, 3.15–7.4 1– 2.2(–2.7) µm, 95% confidence limits = 4.2–4.7 1.9–2.1 µm, (±
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<collectingRegion id="8E36B7D4FFD329427267FACAB254FA0F" box="[800,836,1392,1418]" country="Serbia" name="Sid" pageId="6" pageNumber="147">SD</collectingRegion>
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= 4.5 ± 0.8 1.9 ± 0.3 µm, n= 60).
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<emphasis id="7E86A524FFD3294275ABFACAB4BBFA0E" bold="true" box="[1260,1451,1392,1419]" italics="true" pageId="6" pageNumber="147">Chlamydospores</emphasis>
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occasionally found in old cultures, unicellular or occasionally multicellular (pseudosclerotioid and dictyosporous).
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<emphasis id="7E86A524FFD3294271CFFA02B00EFA56" bold="true" box="[136,286,1464,1491]" italics="true" pageId="6" pageNumber="147">Swollen cells</emphasis>
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terminal or intercalary, solitary or in clusters.
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<emphasis id="7E86A524FFD329427262FA02B2D8FA56" bold="true" box="[805,968,1464,1491]" italics="true" pageId="6" pageNumber="147">Sexual morph</emphasis>
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: not observed.
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</paragraph>
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</subSubSection>
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<subSubSection id="04E82ABDFFD3294271FAFA66B370F94A" pageId="6" pageNumber="147" type="discussion">
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<paragraph id="4C4D7936FFD3294271FAFA66B370F94A" blockId="6.[136,1452,1104,2067]" pageId="6" pageNumber="147">
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Culture characteristics: colonies on PDA attaining
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<quantity id="8B0AD4D3FFD329427242FA66B290FA72" box="[773,896,1500,1527]" metricMagnitude="-2" metricUnit="m" metricValue="4.25" metricValueMax="4.5" metricValueMin="4.0" pageId="6" pageNumber="147" unit="mm" value="42.5" valueMax="45.0" valueMin="40.0">40–45 mm</quantity>
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diam. after 8 days of incubation at 25 ± 0.5 °C and
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<quantity id="8B0AD4D3FFD3294271FDF9BAB025F99E" box="[186,309,1536,1563]" metricMagnitude="-2" metricUnit="m" metricValue="5.35" metricValueMax="5.5" metricValueMin="5.2" pageId="6" pageNumber="147" unit="mm" value="53.5" valueMax="55.0" valueMin="52.0">52–55 mm</quantity>
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diam. at 30 ± 0.5 °C, circular with filiform margin, initially greenish grey to olivaceous grey, with age becoming darker, finally grey, floccose, in some area covered by dirty-white, woolly mycelial masses; reverse brownish green with a grey margin in young colonies, blackish grey in old colonies. Colonies on OA attaining
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||
<quantity id="8B0AD4D3FFD329427422F9F2B1A4F902" metricMagnitude="-2" metricUnit="m" metricValue="4.5" metricValueMax="4.7" metricValueMin="4.3" pageId="6" pageNumber="147" unit="mm" value="45.0" valueMax="47.0" valueMin="43.0">43–47 mm</quantity>
|
||
diam. after 8 days of incubation at 25 ± 0.5 °C and
|
||
<quantity id="8B0AD4D3FFD3294273B2F9D6B27EF902" box="[757,878,1644,1671]" metricMagnitude="-2" metricUnit="m" metricValue="4.85" metricValueMax="5.0" metricValueMin="4.7" pageId="6" pageNumber="147" unit="mm" value="48.5" valueMax="50.0" valueMin="47.0">47–50 mm</quantity>
|
||
diam. at 30 ± 0.5 °C, circular with filiform margin, white to dark white, with age becoming grey, cottony and covered by white aerial mycelial, pycnidia scattered in colony margin as black dots; reverse grey.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="04E82ABDFFD3294271FAF962B2ACF892" pageId="6" pageNumber="147" type="materials_examined">
|
||
<paragraph id="4C4D7936FFD3294271FAF962B2ACF892" blockId="6.[136,1452,1104,2067]" pageId="6" pageNumber="147">
|
||
<emphasis id="7E86A524FFD3294271FAF962B333F976" bold="true" box="[189,547,1752,1779]" italics="true" pageId="6" pageNumber="147">Additional specimen examined</emphasis>
|
||
:
|
||
<collectingCountry id="34E539A6FFD329427374F962B36BF977" box="[563,635,1752,1778]" name="Iran" pageId="6" pageNumber="147">IRAN</collectingCountry>
|
||
.
|
||
<collectingRegion id="8E36B7D4FFD3294273C0F962B27DF977" box="[647,877,1752,1778]" country="Iran" name="Khuzestan" pageId="6" pageNumber="147">Khuzestan Province</collectingRegion>
|
||
; Dezful, isolated from leaf spot of
|
||
<taxonomicName id="8BF202B5FFD3294275B9F963B0D6F892" authority="subsp. napus" class="Magnoliopsida" family="Brassicaceae" genus="Brassica" kingdom="Plantae" order="Brassicales" pageId="6" pageNumber="147" phylum="Tracheophyta" rank="subSpecies" species="napus" subSpecies="napus">
|
||
<emphasis id="7E86A524FFD3294275B9F963B4BBF977" box="[1278,1451,1753,1778]" italics="true" pageId="6" pageNumber="147">Brassica napus</emphasis>
|
||
subsp.
|
||
<emphasis id="7E86A524FFD329427191F947B009F893" box="[214,281,1789,1814]" italics="true" pageId="6" pageNumber="147">napus</emphasis>
|
||
(Brassicaceae)
|
||
</taxonomicName>
|
||
,
|
||
<date id="384C5FF6FFD329427096F947B37AF893" box="[465,618,1788,1815]" pageId="6" pageNumber="147" value="2020-01">January 2020</date>
|
||
,
|
||
<collectionCode id="2AE3E1F3FFD329427333F946B39BF893" box="[628,651,1788,1814]" country="USA" lsid="urn:lsid:biocol.org:col:15406" name="Harvard University - Arnold Arboretum" pageId="6" pageNumber="147" type="Herbarium">A</collectionCode>
|
||
. Safi (SCUA-Ahm-S41-2).
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="04E82ABDFFD3294371FAF89AB3C2FEA1" lastPageId="7" lastPageNumber="148" pageId="6" pageNumber="147" type="discussion">
|
||
<paragraph id="4C4D7936FFD3294371FAF89AB3C2FEA1" blockId="6.[136,1452,1104,2067]" lastBlockId="7.[136,1452,158,293]" lastPageId="7" lastPageNumber="148" pageId="6" pageNumber="147">
|
||
<emphasis id="7E86A524FFD3294271FAF89AB1E3F8BF" bold="true" box="[189,243,1824,1850]" italics="true" pageId="6" pageNumber="147">Note</emphasis>
|
||
:
|
||
<taxonomicName id="8BF202B5FFD329427046F89AB31CF8BF" authorityName="M. Mehrabi-Koushki, A. Safi & R. Farokhinejad" authorityYear="2021" box="[257,524,1824,1850]" class="Dothideomycetes" family="Leptosphaeriaceae" genus="Plenodomus" kingdom="Fungi" order="Pleosporales" pageId="6" pageNumber="147" phylum="Ascomycota" rank="species" species="dezfulensis">
|
||
<emphasis id="7E86A524FFD329427046F89AB31CF8BF" box="[257,524,1824,1850]" italics="true" pageId="6" pageNumber="147">Plenodomus dezfulensis</emphasis>
|
||
</taxonomicName>
|
||
formed a sister lineage with
|
||
<taxonomicName id="8BF202B5FFD32942720FF89BB2CFF8BF" box="[840,991,1824,1851]" class="Dothideomycetes" family="Leptosphaeriaceae" genus="Plenodomus" kingdom="Fungi" order="Pleosporales" pageId="6" pageNumber="147" phylum="Ascomycota" rank="species" species="biglobosus">
|
||
<emphasis id="7E86A524FFD32942720FF89BB249F8BF" box="[840,857,1825,1850]" italics="true" pageId="6" pageNumber="147">P</emphasis>
|
||
.
|
||
<emphasis id="7E86A524FFD329427221F89AB2CFF8BF" box="[870,991,1824,1850]" italics="true" pageId="6" pageNumber="147">biglobosus</emphasis>
|
||
</taxonomicName>
|
||
(
|
||
<figureCitation id="D4C965B3FFD3294272AAF89AB520F8BF" box="[1005,1072,1824,1850]" captionStart="FIGURE 2" captionStartId="5.[136,229,1941,1963]" captionTargetBox="[176,1379,276,1903]" captionTargetId="figure-41@5.[151,1436,245,1916]" captionTargetPageId="5" captionText="FIGURE 2. Phylogenetic tree constructed from a maximum likelihood analysis based on the combined ITS, tub2 and rpb2 sequences of Plenodomus strains. The tree was rooted to other related genera of Didymellaceae. Bootstrap values obtained in maximum likelihood (ML) and maximum parsimony (MP) analyses equal or greater than 50% and Bayesian posterior probability values (BYPP) equal or greater than 0.95 are shown at the nodes, respectively. T letters indicates the ex-type strains." figureDoi="http://doi.org/10.5281/zenodo.5585419" httpUri="https://zenodo.org/record/5585419/files/figure.png" pageId="6" pageNumber="147">Fig. 2</figureCitation>
|
||
), but it can easily be distinguished from this species by pycnidia having hyphal outgrowths and lacking cylindrical neck (
|
||
<bibRefCitation id="286304C7FFD329427531F8FEB48FF8DB" author="Shoemaker, R. A. & Brun, H." box="[1142,1439,1860,1887]" pageId="6" pageNumber="147" pagination="412 - 419" refId="ref11614" refString="Shoemaker, R. A. & Brun, H. (2001) The teleomorph of the weakly aggressive segregate of Leptosphaeria maculans. Canadian Journal of Botany 79 (4): 412 - 419. https: // doi. org / 10.1139 / b 01 - 019" type="journal article" year="2001">Shoemaker & Brun 2001</bibRefCitation>
|
||
). Single nucleotide polymorphisms (SNP) analysis of three regions showed the new species and closest strain of
|
||
<taxonomicName id="8BF202B5FFD3294274D4F8D3B011F823" class="Dothideomycetes" family="Leptosphaeriaceae" genus="Plenodomus" kingdom="Fungi" order="Pleosporales" pageId="6" pageNumber="147" phylum="Ascomycota" rank="species" species="biglobosus">
|
||
<emphasis id="7E86A524FFD3294274D4F8D3B4B4F807" box="[1427,1444,1897,1922]" italics="true" pageId="6" pageNumber="147">P</emphasis>
|
||
.
|
||
<emphasis id="7E86A524FFD3294271CFF836B011F823" box="[136,257,1932,1958]" italics="true" pageId="6" pageNumber="147">biglobosus</emphasis>
|
||
</taxonomicName>
|
||
(CBS 119951) had 2 base pair difference (0.46%) across 435 nucleotides of the ITS region, 7 different base pairs (2.3%) across 306 nucleotides of the
|
||
<emphasis id="7E86A524FFD329427326F80AB383F84F" box="[609,659,1968,1994]" italics="true" pageId="6" pageNumber="147">tub2</emphasis>
|
||
region, and a difference of 16 base pairs (2.2%) across 712 nucleotides of the
|
||
<emphasis id="7E86A524FFD329427188F86EB013F86B" box="[207,259,2004,2030]" italics="true" pageId="6" pageNumber="147">rpb2</emphasis>
|
||
region. Two other closely related species of the new species are
|
||
<taxonomicName id="8BF202B5FFD329427293F86FB06CF797" authority="(Lowen & Sivan.) Gruyter, Aveskamp & Verkley" authorityName="Gruyter, Aveskamp & Verkley" baseAuthorityName="Lowen & Sivan." class="Dothideomycetes" family="Leptosphaeriaceae" genus="Plenodomus" kingdom="Fungi" order="Pleosporales" pageId="6" pageNumber="147" phylum="Ascomycota" rank="species" species="pimpinellae">
|
||
<emphasis id="7E86A524FFD329427293F86FB2F5F86B" box="[980,997,2005,2030]" italics="true" pageId="6" pageNumber="147">P</emphasis>
|
||
.
|
||
<emphasis id="7E86A524FFD3294272B4F86EB567F86B" box="[1011,1143,2004,2030]" italics="true" pageId="6" pageNumber="147">pimpinellae</emphasis>
|
||
(Lowen & Sivan.) Gruyter, Aveskamp & Verkley
|
||
</taxonomicName>
|
||
, and
|
||
<taxonomicName id="8BF202B5FFD3294270FDF843B354F797" box="[442,580,2040,2067]" class="Dothideomycetes" family="Didymellaceae" genus="Phoma" kingdom="Fungi" order="Pleosporales" pageId="6" pageNumber="147" phylum="Ascomycota" rank="species" species="wasabiae">
|
||
<emphasis id="7E86A524FFD3294270FDF843B0DBF797" box="[442,459,2041,2066]" italics="true" pageId="6" pageNumber="147">P</emphasis>
|
||
.
|
||
<emphasis id="7E86A524FFD32942709DF842B354F797" box="[474,580,2040,2066]" italics="true" pageId="6" pageNumber="147">wasabiae</emphasis>
|
||
</taxonomicName>
|
||
.
|
||
<taxonomicName id="8BF202B5FFD329427314F842B271F797" authorityName="M. Mehrabi-Koushki, A. Safi & R. Farokhinejad" authorityYear="2021" box="[595,865,2040,2066]" class="Dothideomycetes" family="Leptosphaeriaceae" genus="Plenodomus" kingdom="Fungi" order="Pleosporales" pageId="6" pageNumber="147" phylum="Ascomycota" rank="species" species="dezfulensis">
|
||
<emphasis id="7E86A524FFD329427314F842B271F797" box="[595,865,2040,2066]" italics="true" pageId="6" pageNumber="147">Plenodomus dezfulensis</emphasis>
|
||
</taxonomicName>
|
||
can be easily distinguished from
|
||
<taxonomicName id="8BF202B5FFD3294275A5F843B497F797" box="[1250,1415,2040,2067]" class="Dothideomycetes" family="Leptosphaeriaceae" genus="Plenodomus" kingdom="Fungi" order="Pleosporales" pageId="6" pageNumber="147" phylum="Ascomycota" rank="species" species="pimpinellae">
|
||
<emphasis id="7E86A524FFD3294275A5F843B5E3F797" box="[1250,1267,2041,2066]" italics="true" pageId="6" pageNumber="147">P</emphasis>
|
||
.
|
||
<emphasis id="7E86A524FFD329427444F842B497F797" box="[1283,1415,2040,2066]" italics="true" pageId="6" pageNumber="147">pimpinellae</emphasis>
|
||
</taxonomicName>
|
||
by narrower, in culture formed pycnidia lacking long elongated neck (
|
||
<bibRefCitation id="286304C7FFD22943723AFF24B57AFF3D" author="Boerema, G. H. & de Gruyter, J. & Noordeloos, M. E. & Hamers, M. E. C." box="[893,1130,158,185]" pageId="7" pageNumber="148" refId="ref7080" refString="Boerema, G. H., de Gruyter, J., Noordeloos, M. E. & Hamers, M. E. C. (2004) Phoma identification manual. Differentiation of specific and infra - specific taxa in culture. Wallingford, UK: CABI Publishing. https: // doi. org / 10.1079 / 9780851997438.0000" type="book" year="2004">
|
||
Boerema
|
||
<emphasis id="7E86A524FFD2294372ABFF25B50EFF3D" box="[1004,1054,158,184]" italics="true" pageId="7" pageNumber="148">et al</emphasis>
|
||
. 2004
|
||
</bibRefCitation>
|
||
). In the comparison of DNA sequences of two regions (ITS: 435 bp, tub2: 306 bp),
|
||
<taxonomicName id="8BF202B5FFD2294373AAFF78B2EAFF59" authorityName="M. Mehrabi-Koushki, A. Safi & R. Farokhinejad" authorityYear="2021" box="[749,1018,194,220]" class="Dothideomycetes" family="Leptosphaeriaceae" genus="Plenodomus" kingdom="Fungi" order="Pleosporales" pageId="7" pageNumber="148" phylum="Ascomycota" rank="species" species="dezfulensis">
|
||
<emphasis id="7E86A524FFD2294373AAFF78B2EAFF59" box="[749,1018,194,220]" italics="true" pageId="7" pageNumber="148">Plenodomus dezfulensis</emphasis>
|
||
</taxonomicName>
|
||
differs from
|
||
<taxonomicName id="8BF202B5FFD2294375C8FF79B422FF59" box="[1167,1330,194,221]" class="Dothideomycetes" family="Leptosphaeriaceae" genus="Plenodomus" kingdom="Fungi" order="Pleosporales" pageId="7" pageNumber="148" phylum="Ascomycota" rank="species" species="pimpinellae">
|
||
<emphasis id="7E86A524FFD2294375C8FF79B5B0FF59" box="[1167,1184,195,220]" italics="true" pageId="7" pageNumber="148">P</emphasis>
|
||
.
|
||
<emphasis id="7E86A524FFD2294375E9FF78B422FF59" box="[1198,1330,194,220]" italics="true" pageId="7" pageNumber="148">pimpinellae</emphasis>
|
||
</taxonomicName>
|
||
in 13 base pairs (1.8%, ITS: 3 bp,
|
||
<emphasis id="7E86A524FFD2294370CCFF5CB0ADFE85" box="[395,445,230,256]" italics="true" pageId="7" pageNumber="148">tub2</emphasis>
|
||
: 10 bp) and from
|
||
<taxonomicName id="8BF202B5FFD2294373C4FF5DB21CFE85" box="[643,780,230,257]" class="Dothideomycetes" family="Didymellaceae" genus="Phoma" kingdom="Fungi" order="Pleosporales" pageId="7" pageNumber="148" phylum="Ascomycota" rank="species" species="wasabiae">
|
||
<emphasis id="7E86A524FFD2294373C4FF5DB384FE85" box="[643,660,231,256]" italics="true" pageId="7" pageNumber="148">P</emphasis>
|
||
.
|
||
<emphasis id="7E86A524FFD2294373E5FF5CB21CFE85" box="[674,780,230,256]" italics="true" pageId="7" pageNumber="148">wasabiae</emphasis>
|
||
</taxonomicName>
|
||
in 12 base pairs (1.6%, ITS: 4 bp,
|
||
<emphasis id="7E86A524FFD2294375CDFF5CB5ACFE85" box="[1162,1212,230,256]" italics="true" pageId="7" pageNumber="148">tub2</emphasis>
|
||
: 8 bp). The
|
||
<emphasis id="7E86A524FFD229437405FF5CB466FE85" box="[1346,1398,230,256]" italics="true" pageId="7" pageNumber="148">rpb2</emphasis>
|
||
data of both species are not available for the comparison.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</subSection>
|
||
</treatment>
|
||
</document> |