137 lines
12 KiB
XML
137 lines
12 KiB
XML
<document id="47C5E6700C8D5219F0BFE4DE9AA26A4C" ID-DOI="10.3897/mycokeys.107.125549" ID-publisher-id="125549" URI-arpha="3EA0E723-E6FC-58B0-8491-ED4CC2FBAB87" article-type="research-article" checkinTime="1723223129036" checkinUser="pensoft" docAuthor="Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir" docDate="2024" docId="861CE3AB89AA5874BB2A133E6C3004A1" docLanguage="en" docName="MycoKeys 107: 249-271" docOrigin="MycoKeys 107" docSource="https://mycokeys.pensoft.net/article/125549/download/xml/" docStyle="DocumentStyle:PensoftTaxPub.0000.journal_article.mycokeys" docStyleName="PensoftTaxPub.0000.journal_article.mycokeys" docTitle="Densosporales Tedersoo 2024, ord. nov." docType="treatment" docVersion="1" dtd-version="3.0" lastPageNumber="271" masterDocId="3EA0E723E6FC58B08491ED4CC2FBAB87" masterDocTitle="Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)" masterLastPageNumber="271" masterPageNumber="249" pageNumber="249" updateTime="1723223268898" updateUser="pensoft">
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<mods:titleInfo id="2AA5B0ABCD6D2ED353195BDA2E55A870">
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<mods:title id="A5FAF89DAAE529CEFC8AD2E36FC39A9A">Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)</mods:title>
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</mods:titleInfo>
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<mods:name id="EFCC0FF137482B8DAA5B603762D8C05A" type="personal">
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<mods:roleTerm id="EE021FB6308E24B43F6F2AC6D54D4261">Author</mods:roleTerm>
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<mods:namePart id="A7BAA0B861DC768252AA745746E697C8">Tedersoo, Leho</mods:namePart>
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<mods:affiliation id="23A3DBFFA5DAD486BE98DB0C71D7E293">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia & Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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<mods:roleTerm id="96B4D67654079FFF44BBA73DD3317EEB">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="0C5C7AB61366F677A25BA5CA50687741">Magurno, Franco</mods:namePart>
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<mods:nameIdentifier id="75B61F727450FB941AD88E0B7F8D99C7" type="ORCID">0000-0002-3117-8149</mods:nameIdentifier>
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<mods:affiliation id="11136FBD0EB3DC750FCDDF1B9942D2B5">Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Jagiellońska 28, 40 - 032 Katowice, Poland</mods:affiliation>
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</mods:role>
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<mods:namePart id="10A95C5C2C185ED62B6350D40DF86F06">Alkahtani, Saad</mods:namePart>
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<mods:nameIdentifier id="CDD7640214A1D7CEE495A3F51C8AEFDD" type="ORCID">0000-0001-7381-5110</mods:nameIdentifier>
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<mods:affiliation id="7B18B4F0DD2707AAB448FFDD4CF477A0">Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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</mods:role>
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<mods:namePart id="BA5C7CC381594C0CA01DD053806B5072">Mikryukov, Vladimir</mods:namePart>
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<mods:nameIdentifier id="ECA1BF6CCFB3DFA20E848D85A19AE367" type="ORCID">0000-0003-2786-2690</mods:nameIdentifier>
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<mods:affiliation id="BCE232FC14BCC014203083456C0E68F5">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia</mods:affiliation>
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<mods:typeOfResource id="FEBDACE7BA356E85B8A550367F5BE7BF">text</mods:typeOfResource>
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<mods:titleInfo id="FD408FB8175EB1A90E254B38A9AEB57C">
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<mods:title id="799CB2C89490906BBCF99ECE4278252E">MycoKeys</mods:title>
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<mods:part id="81429266D0D6E1BAC10565BA214B496E">
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<mods:date id="188857454B635ECBD5E49AC33322D51E">2024</mods:date>
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<mods:detail id="505A3E08706ABE58F06DFF1229CACB5B" type="pubDate">
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<mods:number id="DF1DD4E2860F26F296369924D243D42B">2024-08-09</mods:number>
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</mods:detail>
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<mods:detail id="28589C8B10A249CA816566B0EFFDAC9D" type="volume">
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<mods:number id="A19064CCF5279374CAD18CE128881819">107</mods:number>
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<mods:extent id="33D9B53BD43F32AA59A48EA8B277EEEB" unit="page">
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<mods:start id="D30A52FA72EA0F0E4505950C4988A445">249</mods:start>
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<mods:end id="04A77C8A89BE2C692972A1B16150E43C">271</mods:end>
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<mods:classification id="79D4C4FEFE9560FA30DA9802AF01B881">journal article</mods:classification>
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<mods:identifier id="30F890295FBDB7B8B19B65B5EA0FF8D8" type="DOI">10.3897/mycokeys.107.125549</mods:identifier>
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</mods:mods>
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<treatment id="861CE3AB89AA5874BB2A133E6C3004A1" ID-arpha="861CE3AB-89AA-5874-BB2A-133E6C3004A1" ID-mycobank="853690" LSID="urn:lsid:plazi:treatment:861CE3AB89AA5874BB2A133E6C3004A1" httpUri="http://treatment.plazi.org/id/861CE3AB89AA5874BB2A133E6C3004A1">
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<subSubSection id="C8B8D3B015E3305054F9256B1E33B0F6" type="nomenclature">
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<paragraph id="BEAB37A16E0B19F8B9DD3D086A8EDA9B">
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<taxonomicName id="8E81240618B7FBD804CD9796771E4012" authority="Tedersoo" authorityName="Tedersoo" authorityYear="2024" kingdom="Fungi" order="Densosporales" rank="order" status="ord. nov.">Densosporales Tedersoo</taxonomicName>
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<taxonomicNameLabel id="3A5B4C7350CB9E0E3D80FA9771122E49" rank="order">ord. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0EZGEK" type="Type family">
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<paragraph id="9158FD5CD6687A9F2EC2981E77A7A234">
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<heading id="8D3F86A7ECCA4CDB94C5B81021AE7F2D" reason="title">
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<typeStatus id="60A2C5B5A3DAEBDD8F2B39FD0C9E1DC0">Type</typeStatus>
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family.
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</heading>
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</paragraph>
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<paragraph id="1B64A15F6723AD408911CE82284EB6CD">
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<taxonomicName id="FCC6CB0286B0BD99F480B449881E1166" authority="Desiro, M. E. Sm., Bidartondo, Trappe & Bonito." authorityName="Desiro, M. E. Sm., Bidartondo, Trappe & Bonito." class="Endogonomycetes" family="Densosporaceae" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" order="Endogonales" phylum="Mucoromycota" rank="family">Densosporaceae Desirò, M. E. Sm., Bidartondo, Trappe & Bonito.</taxonomicName>
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0EEHEK" type="description">
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<paragraph id="816AB7333B6D9D70198FFA8B6EA1C8E5">
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<heading id="21E48DCBBE0F03786C89C4AA72D1ED3D" reason="title">Description.</heading>
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</paragraph>
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<paragraph id="DD6B56F504B942BB2E384B8D89630A63">
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<taxonomicName id="8E5B3748C12434D07B5A0808F154BE15" authorityName="Tedersoo" authorityYear="2024" rank="subPhylum" subPhylum="Densosporales">Densosporales</taxonomicName>
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is defined as a monophyletic group in
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<taxonomicName id="2CA40F5F73A06366872241C6A502750C" class="Endogonomycetes" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" phylum="Mucoromycota" rank="class">Endogonomycetes</taxonomicName>
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(Fig.
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<figureCitation id="9C6920CA804436210D4E2390E0322CDA" captionStart="Figure 2" captionStartId="F2" captionText="Figure 2. Phylogenetic position of genera and genus-level groups of Endogonomycetes based on Maximum Likelihood analysis of SSU- 5.8 S-LSU sequences. The clades are collapsed, with the number of sequences included in parentheses. Question marks above branches indicate low ultra-rapid bootstrap support (< 95). Orders are highlighted in different colours. The uncollapsed phylogram is given in Suppl. material 3." figureDoi="10.3897/mycokeys.107.125549.figure2" httpUri="https://binary.pensoft.net/fig/1111389">2</figureCitation>
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, Suppl. material
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<xref id="5714DEF81F5A6171381B9969F997EDA5" ref-type="supplementary-material" rid="S3">3</xref>
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) that corresponds to
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<taxonomicName id="9767624DA8CEC8D55DDD8692F3CFDF25" authority="sensu Desiro et al. (2017)" authorityName="Desiro" authorityYear="2017" class="Endogonomycetes" family="Densosporaceae" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" order="Endogonales" phylum="Mucoromycota" rank="family">
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Densosporaceae sensu
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<bibRefCitation id="B0F1E7F71815CD9B773AA84DF510F331" DOI="10.5598/imafungus.2017.08.02.03" author="Desiro A & Rimington WR & Jacob A & Pol NV & Smith ME & Trappe JM & Bidartondo MI & Bonito G" etAl="et al." firstAuthor="Desiro" issue="2" journalOrPublisher="IMA Fungus" pagination="245-264" refId="B22" refString="Desiro A, Rimington WR, Jacob A, Pol NV, Smith ME, Trappe JM, Bidartondo MI, Bonito G (2017) Multigene phylogeny of Endogonales, an early diverging lineage of fungi associated with plants. IMA Fungus 8 (2): 245–264. https://doi.org/10.5598/imafungus.2017.08.02.03" title="Multigene phylogeny of Endogonales, an early diverging lineage of fungi associated with plants." volume="8" year="2017">Desiro et al. (2017)</bibRefCitation>
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</taxonomicName>
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. Covers
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<emphasis id="9EC19519BC7359A8112A67A466638D45" italics="true">Densosporacae</emphasis>
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and Planticonsortiaceae and the least inclusive clade with sequence accessions UDB 028692, EUK 1104889, EUK 1104816 and EUK 1601509 (Suppl. material
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<xref id="44E6668BAC10A8BED4A4D14315C0459E" ref-type="supplementary-material" rid="S3">3</xref>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0EWIEK" type="notes">
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<paragraph id="00081A63B7086678426EBF437CABF1F2">
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<heading id="1414A29D34EC6EA18A1FC5EBFC7B3A21" reason="title">Notes.</heading>
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</paragraph>
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<paragraph id="F85A2D66D9AFC64B0B2ED95B1261B128">
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<taxonomicName id="DAB96857FEAFE8DD749204C9A818FCEA" authorityName="Tedersoo" authorityYear="2024" rank="subPhylum" subPhylum="Densosporales">Densosporales</taxonomicName>
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harbours roughly one half of the
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<taxonomicName id="93CF115B714A749FF9803ED2ED5F2228" class="Endogonomycetes" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" phylum="Mucoromycota" rank="class">Endogonomycetes</taxonomicName>
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based on
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<collectionCode id="1B9B6C2B7575C4CA52903DBAF68226A4" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:15590" lsid="urn:lsid:biocol.org:col:15590" name="Louisiana State University - Herbarium" type="Herbarium">LSU</collectionCode>
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data. It comprises
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<emphasis id="BE2974BE2B45D9680CF24B100BBBA2C3" italics="true">Densosporacae</emphasis>
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, Planticonsortiaceae and 16 additional family-level groups collectively covering> 200 species.
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<collectionCode id="5CC5A64F812D785088B5078745042BB9" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:15590" lsid="urn:lsid:biocol.org:col:15590" name="Louisiana State University - Herbarium" type="Herbarium">LSU</collectionCode>
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has much greater phylogenetic resolution compared with
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<collectionCode id="104B600B8500187217F30310948714E9" country="0" httpUri="http://grbio.org/cool/fye2-vfes" name="Saratov State University" type="">SSU</collectionCode>
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(Suppl. materials
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<xref id="8686E54EC0F6EAA5B24CD663138FC724" ref-type="supplementary-material" rid="S3">3</xref>
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,
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<xref id="D693713F6D3244E20327EDBFC34874D9" ref-type="supplementary-material" rid="S4">4</xref>
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), and the potential utility of the
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<abbrev id="ABBRID0E2JEK" xlink_title="internal transcribed spacer">
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<collectionCode id="D73EBF064F0914454A3C94CDC3B764C3">ITS</collectionCode>
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</abbrev>
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region seems to vary greatly by family. Many more
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<abbrev id="ABBRID0E6JEK" xlink_title="internal transcribed spacer">
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<collectionCode id="3277C80C7F5C048E0208B348853A20F3">ITS</collectionCode>
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</abbrev>
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-
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<collectionCode id="84348C87052CBB15FA6C555045D7336C" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:15590" lsid="urn:lsid:biocol.org:col:15590" name="Louisiana State University - Herbarium" type="Herbarium">LSU</collectionCode>
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sequences are needed to understand family- and genus-level composition of
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<taxonomicName id="4E829C6C1D263DA361BC79ECFFA87BFE" authorityName="Tedersoo" authorityYear="2024" rank="subPhylum" subPhylum="Densosporales">Densosporales</taxonomicName>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |