180 lines
20 KiB
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180 lines
20 KiB
XML
<document id="1CB0895870EBF2B337A3964EF53A21B2" ID-CLB-Dataset="30099" ID-DOI="http://dx.doi.org/10.3897/zookeys.757.24453" ID-GBIF-Dataset="495b8780-01c0-4cd6-a7db-b523d65c59b6" ID-PMC="PMC5958176" ID-Pensoft-Pub="1313-2970-757-85" ID-PubMed="29780268" ID-ZooBank="559E4F4F7C35438089D5BA42A5D38004" ModsDocAuthor="" ModsDocDate="2018" ModsDocID="1313-2970-757-85" ModsDocOrigin="ZooKeys 757" ModsDocTitle="Filling the BINs of life: Report of an amphibian and reptile survey of the Tanintharyi (Tenasserim) Region of Myanmar, with DNA barcode data" checkinTime="1526014213240" checkinUser="pensoft" docAuthor="Mulcahy, Daniel G., Lee, Justin L., Miller, Aryeh H., Chand, Mia, Thura, Myint Kyaw & Zug, George R." docDate="2018" docId="55D95B698E3D5432D7A7759AA2D11758" docLanguage="en" docName="ZooKeys 757: 85-152" docOrigin="ZooKeys 757" docSource="http://dx.doi.org/10.3897/zookeys.757.24453" docTitle="Sylvirana malayana Sheriden & Stuart 2018" docType="treatment" docVersion="6" lastPageNumber="85" masterDocId="56646A55FA2FE008FFFC774CFFE4FFFF" masterDocTitle="Filling the BINs of life: Report of an amphibian and reptile survey of the Tanintharyi (Tenasserim) Region of Myanmar, with DNA barcode data" masterLastPageNumber="152" masterPageNumber="85" pageNumber="85" updateTime="1701372869680" updateUser="ExternalLinkService">
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<mods:title id="0F8962BBC44C02CA50A0E82EE1CC30D4">Filling the BINs of life: Report of an amphibian and reptile survey of the Tanintharyi (Tenasserim) Region of Myanmar, with DNA barcode data</mods:title>
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<mods:namePart id="168EA67C2B556FBE55B4D70F8E3D2DF5">Mulcahy, Daniel G.</mods:namePart>
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<mods:namePart id="09F70690713A1AD064E33333AAB2DA82">Lee, Justin L.</mods:namePart>
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<mods:namePart id="BE47F55A7BB613C7DB96F58EAD89E9FB">Miller, Aryeh H.</mods:namePart>
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<mods:namePart id="C90D6158573BEF43D47099F966EB05BB">Chand, Mia</mods:namePart>
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<mods:namePart id="7C8131B96D2692A0028692DC2F9934F3">Thura, Myint Kyaw</mods:namePart>
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<mods:namePart id="B81773EA16E298D8B19E7DE544B16DB5">Zug, George R.</mods:namePart>
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<mods:typeOfResource id="30577BA00D76FBCF2A049B27282CEA04">text</mods:typeOfResource>
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<mods:date id="35ADE2FC049182B980A761796DF498C6">2018</mods:date>
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<mods:detail id="68CF13DF5171FDC886D8806973449D67" type="volume">
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<mods:number id="BE5E2B2439C5522AC19BFCAA2035036F">757</mods:number>
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<mods:classification id="B135B7D02B26D73107E41CA223A33263">journal article</mods:classification>
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<mods:identifier id="BD41D59CA3030E71779BD594C099F19D" type="DOI">http://dx.doi.org/10.3897/zookeys.757.24453</mods:identifier>
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<mods:identifier id="4271422E07BDC3F373AAB6826CDEBDEC" type="Pensoft-Pub">1313-2970-757-85</mods:identifier>
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<mods:identifier id="D6C0C3DA59D1943665780414CCC3A72E" type="ZooBank">559E4F4F7C35438089D5BA42A5D38004</mods:identifier>
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<treatment id="55D95B698E3D5432D7A7759AA2D11758" ID-GBIF-Taxon="143935118" LSID="urn:lsid:plazi:treatment:55D95B698E3D5432D7A7759AA2D11758" httpUri="http://treatment.plazi.org/id/55D95B698E3D5432D7A7759AA2D11758" lastPageNumber="85" pageId="0" pageNumber="85">
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<subSubSection id="A5FADA166C652AE07F41969E58B1F7CD" pageId="0" pageNumber="85" type="nomenclature">
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<paragraph id="951264916636F46F642032753703B3D1" pageId="0" pageNumber="85">
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<taxonomicName id="F6F8368C45CFFD4A06399E849EF99316" ID-CoL="7B737" authority="Sheriden & Stuart, 2018" authorityName="Sheriden & Stuart" authorityYear="2018" class="Amphibia" family="Ranidae" genus="Sylvirana" higherTaxonomySource="CoL" kingdom="Animalia" lsidName="Sylvirana malayana" order="Anura" pageId="0" pageNumber="85" phylum="Chordata" rank="species" species="malayana">Sylvirana malayana Sheriden & Stuart, 2018</taxonomicName>
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Black-sided Forest Frog Fig. 3H
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</paragraph>
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</subSubSection>
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<subSubSection id="94ECA276E14AF55F8B9EBD88A7D90228" pageId="0" pageNumber="85" type="description">
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<paragraph id="94F59532DBA21714DFF1E086A62FE0A6" pageId="0" pageNumber="85">Description.</paragraph>
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<paragraph id="654341BAE6A2D7EDF079A0E8DB05BC22" pageId="0" pageNumber="85">Immature female, 39.9 mm SVL.</paragraph>
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</subSubSection>
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<subSubSection id="72046FEAD747D924FFAD815FD89722F5" pageId="0" pageNumber="85" type="natural history">
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<paragraph id="2D8F9B160C58509DF5A6F26E71D64B07" pageId="0" pageNumber="85">Natural history notes.</paragraph>
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<paragraph id="387C4F51966D76CAFD9CA8EE0BE899FA" pageId="0" pageNumber="85">Specimen was found adjacent to the forest stream.</paragraph>
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</subSubSection>
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<subSubSection id="FEBEAD5BA1296161B4E1CBA99570D2C1" pageId="0" pageNumber="85" type="distribution">
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<paragraph id="12C30633F6CE4C085466091D1C9B0990" pageId="0" pageNumber="85">General Distribution.</paragraph>
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<paragraph id="CF99BF4FB7008FD57DB9E6693CE8BF38" pageId="0" pageNumber="85">
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Once thought to be widespread, Nepal, northern peninsular and Northeast India to southwest China and Southeast Asia. However, several recent studies based on molecular data suggest "S. nigrovittata" represents a multiple-species complex, with this species (
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<taxonomicName id="0B12F07599DECABE9499D856DDC2C4E2" lsidName="S. malayana" pageId="0" pageNumber="85" rank="species" species="malayana">S. malayana</taxonomicName>
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) being recently described from the Thai-Malay Peninsula our our specimen extends the range into central Tanintharyi, ostensibly overlapping with
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<taxonomicName id="22E01956CE5D57686B239297FBD61432" lsidName="S. nigrovittata" pageId="0" pageNumber="85" rank="species" species="nigrovittata">S. nigrovittata</taxonomicName>
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sensu strico (see below).
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</paragraph>
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</subSubSection>
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<subSubSection id="E54DA73352EAF7204EA3837F9C076E6D" pageId="0" pageNumber="85" type="molecular data">
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<paragraph id="CB179B39B4E832B088512474CA907369" pageId="0" pageNumber="85">Molecular Data.</paragraph>
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<paragraph id="21B6BC4B029952510E341C4E2B05C7BB" pageId="0" pageNumber="85">
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One specimen was collected in 2014, it was placed in its own COIBIN and in a 16S clade with other individuals identified as
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<taxonomicName id="1A7D0C0659055A89ACD21C2595134F5D" lsidName="S. nigrovittata" pageId="0" pageNumber="85" rank="species" species="nigrovittata">S. nigrovittata</taxonomicName>
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in GenBank from Phang-Nga, Thailand (KR827826,
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<bibRefCitation id="6AB61A3E18ED3CBF42A9D649D48C76BF" author="Grosjean, S" journalOrPublisher="Comptes Rendus Biologies" pageId="0" pageNumber="85" pagination="351 - 361" title="Improving biodiversity assessment of anuran amphibians using DNA barcoding of tadpoles. Case studies from Southeast Asia." url="http://dx.doi.org/10.1016/j.crvi.2015.03.015" volume="338" year="2015 b">Grosjean et al. 2015b</bibRefCitation>
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), and other un-published sequences that lack specimen information (KF738999-9002, EU604197). Our specimen was placed sister to the COI barcode for the same individual for which 16S date were available (
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<bibRefCitation id="A2FC894D555AECE431C7432DA9329D99" author="Grosjean, S" journalOrPublisher="Comptes Rendus Biologies" pageId="0" pageNumber="85" pagination="351 - 361" title="Improving biodiversity assessment of anuran amphibians using DNA barcoding of tadpoles. Case studies from Southeast Asia." url="http://dx.doi.org/10.1016/j.crvi.2015.03.015" volume="338" year="2015 b">Grosjean et al. 2015b</bibRefCitation>
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). A very recent paper (Sheriden and Stuart 2018), published during revision of this manuscript, describes four new species in this complex. Our specimen falls (not shown) within one of their newly described peninsular-Malaysian species (
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<taxonomicName id="3A84059DC32D647296BB7D933F5E2076" lsidName="S. malayana" pageId="0" pageNumber="85" rank="species" species="malayana">S. malayana</taxonomicName>
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), extending it into Tanintharyi.
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<bibRefCitation id="0311D2FF285CE141C656985DAB47A129" author="Dubois, A" journalOrPublisher="Bulletin Mensuel de la Societe Linneenne de Lyon" pageId="0" pageNumber="85" pagination="305 - 352" title="Notes sur la classification des Ranidae (Amphibiens anoures)." url="https://doi.org/10.3406/linly.1992.11011" volume="61" year="1992">Dubois (1992)</bibRefCitation>
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designated a lectotype of
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<taxonomicName id="6A9ABF30E3D06BAD20907AF5AEE0E276" class="Amphibia" family="Mantellidae" genus="Limnodytes" higherTaxonomySource="CoL" kingdom="Animalia" lsidName="Limnodytes nigrovittatus" order="Anura" pageId="0" pageNumber="85" phylum="Chordata" rank="species" species="nigrovittatus">Limnodytes nigrovittatus</taxonomicName>
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<bibRefCitation id="8B27008D860E8CE0EA25C1719D077204" author="Blyth, E" journalOrPublisher="Journal of the Asiatic Society of Bengal" pageId="0" pageNumber="85" pagination="711 - 723" title="Report for October Meeting, 1855." volume="24" year="1856">Blyth 1856</bibRefCitation>
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and restricted the type locality to "Mergui and the valley of the Tenasserim River." Mergui is present day Myeik, adjacent to the mouth of the Tanintharyi River. We find it peculiar that our specimen, from a tributary of the Tanintharyi River, represents this newly described species and not
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<taxonomicName id="5F067AF91EC2597BD43BFFEC0F7F5299" lsidName="S. nigrovittata" pageId="0" pageNumber="85" rank="species" species="nigrovittata">S. nigrovittata</taxonomicName>
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as it was collected in between their
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<taxonomicName id="43A87A62F5F40719C01D05A6AB70BB41" lsidName="S. nigrovittata" pageId="0" pageNumber="85" rank="species" species="nigrovittata">S. nigrovittata</taxonomicName>
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genetic samples (from western Thailand) and the type locality (Myeik). Nevertheless, two clades appear to extend across the Isthmus of Kra on the eastern (
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<taxonomicName id="4FBBDA6A0CEEF07D94D50074FCAD6BB3" lsidName="S. nigrovittata" pageId="0" pageNumber="85" rank="species" species="nigrovittata">S. nigrovittata</taxonomicName>
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) and western (
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<taxonomicName id="E06B38E5425D4E3F3D7A3F9B03DCBFCA" lsidName="S. malayana" pageId="0" pageNumber="85" rank="species" species="malayana">S. malayana</taxonomicName>
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) sides. The type of
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<taxonomicName id="F1631A1E6B2F8E05416BDD98155E7B39" lsidName="S. nigrovittata" pageId="0" pageNumber="85" rank="species" species="nigrovittata">S. nigrovittata</taxonomicName>
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is a female specimen for which distinguishing characteristics are lacking. Until sequence data can be obtained from the type specimen, or additional material can be collected from the Myeik area proper, we remain skeptical that the newly described
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<taxonomicName id="9ED3C94E49CEEFA0785A61115CF5F87E" lsidName="S. malayana" pageId="0" pageNumber="85" rank="species" species="malayana">S. malayana</taxonomicName>
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may represent
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<taxonomicName id="64E8CF2734FD94764448304DE1824E9F" lsidName="S. nigrovittata" pageId="0" pageNumber="85" rank="species" species="nigrovittata">S. nigrovittata</taxonomicName>
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sensu stricto and populations sampled by Sheriden and Stuart (2018) to the north, and east may represent a new species.
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</paragraph>
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</subSubSection>
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<subSubSection id="3F9D5952C1560C23D4609230BBEDD8A6" pageId="0" pageNumber="85" type="materials_examined">
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<paragraph id="6E21BA09C0021256DF389EF4BC80899A" pageId="0" pageNumber="85">Specimens examined.</paragraph>
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<paragraph id="5D53DCDD7E29610AEC7066F17924DE70" pageId="0" pageNumber="85">USNM 586970.</paragraph>
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</subSubSection>
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<subSubSection id="0DF92DF80072A96A33B837B87430C9E6" pageId="0" pageNumber="85" type="red list status">
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<paragraph id="FA80397B77A41AC7FCD10E5E906E4F68" pageId="0" pageNumber="85">Red List status.</paragraph>
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<paragraph id="21E63019A8791CC5A9D1AF42CC69918E" pageId="0" pageNumber="85">LC.</paragraph>
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</subSubSection>
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<subSubSection id="DBA9065728B02A6526F18903B786B9FD" pageId="0" pageNumber="85" type="additional sylvirana/hylarana">
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<paragraph id="BDAF1F6D4A68CEFC28E1738F99E1DBAE" pageId="0" pageNumber="85">
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Additional
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<taxonomicName id="1D42B4CDCEBC060BE29C9C6087E73092" class="Amphibia" family="Ranidae" genus="Sylvirana" higherTaxonomySource="CoL" kingdom="Animalia" lsidName="Sylvirana" order="Anura" pageId="0" pageNumber="85" phylum="Chordata" rank="genus">Sylvirana</taxonomicName>
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/
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<taxonomicName id="31E1C6E6D90F85A5D07497ADC6615858" class="Amphibia" family="Ranidae" genus="Hylarana." higherTaxonomySource="GBIF" kingdom="Animalia" lsidName="Hylarana." order="Anura" pageId="0" pageNumber="85" phylum="Chordata" rank="genus">Hylarana.</taxonomicName>
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</paragraph>
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<paragraph id="E16A6EDF691CB882AD61A19DDBAB9137" pageId="0" pageNumber="85">
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We sequenced several other individuals from northern Myanmar identified as
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<taxonomicName id="4EAAF27043AC9126EC6E1EAFCFB18919" class="Amphibia" family="Ranidae" genus="Sylvirana" higherTaxonomySource="CoL" kingdom="Animalia" lsidName="Sylvirana" order="Anura" pageId="0" pageNumber="85" phylum="Chordata" rank="genus">Sylvirana</taxonomicName>
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/
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<taxonomicName id="BC20DDFB80ED6DEF80D78F14D4CD320B" class="Amphibia" family="Ranidae" genus="Hylarana" higherTaxonomySource="CoL" kingdom="Animalia" lsidName="Hylarana" order="Anura" pageId="0" pageNumber="85" phylum="Chordata" rank="genus">Hylarana</taxonomicName>
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sp. We found several clades of "S. nigrovittata" in our 16S tree. We sequenced two individuals from Mon State (USNM 583176 and USNM 583178) and one from Mandalay (USNM 583174) that were identified as
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<taxonomicName id="78C2898D2FF9ECE0812F578EC476B37B" lsidName="S. menglaensis" pageId="0" pageNumber="85" rank="species" species="menglaensis">S. menglaensis</taxonomicName>
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and were placed in two COIBINs (Mon and Mandalay). The Mandalay specimen was placed in a BIN with nine other individuals, seven identified as
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<taxonomicName id="1BCD4556810DB8C82C95CDBE9FA611C1" lsidName="H. menglaensis" pageId="0" pageNumber="85" rank="species" species="menglaensis">H. menglaensis</taxonomicName>
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, and two as
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<taxonomicName id="A4F0BFEA3364470013E4B5F60BF497B4" lsidName="S. nigrovittata" pageId="0" pageNumber="85" rank="species" species="nigrovittata">S. nigrovittata</taxonomicName>
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. The COI data placed these individuals in a clade with other
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<taxonomicName id="5C8E47CC094673C67FB2C58C31E3D35E" lsidName="S. menglaensis" pageId="0" pageNumber="85" rank="species" species="menglaensis">S. menglaensis</taxonomicName>
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for which COI data were available, with the BINs forming clades, with other clades of specimens identified as
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<taxonomicName id="69D4A10FB346553009F5EBD9FB466DCD" lsidName="S. menglaensis" pageId="0" pageNumber="85" rank="species" species="menglaensis">S. menglaensis</taxonomicName>
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. These were all placed in a 16S clade containing other specimens identified as
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<taxonomicName id="5C13B266FB40E54BFA60C8B17BAA0019" lsidName="S. menglaensis" pageId="0" pageNumber="85" rank="species" species="menglaensis">S. menglaensis</taxonomicName>
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in GenBank (KR827810-22,
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<bibRefCitation id="1777DE27A501948F8EA1CB6B9EE01523" author="Grosjean, S" journalOrPublisher="Comptes Rendus Biologies" pageId="0" pageNumber="85" pagination="351 - 361" title="Improving biodiversity assessment of anuran amphibians using DNA barcoding of tadpoles. Case studies from Southeast Asia." url="http://dx.doi.org/10.1016/j.crvi.2015.03.015" volume="338" year="2015 b">Grosjean et al. 2015b</bibRefCitation>
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). Sheriden and Stuart (2018) placed
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<taxonomicName id="14378ED5BE3587815EAD56EC31426807" lsidName="S. menglaensis" pageId="0" pageNumber="85" rank="species" species="menglaensis">S. menglaensis</taxonomicName>
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in synonymy with
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<taxonomicName id="08D6F2A0E84C38BC13A7AC2B1363756A" lsidName="S. nigrovittata" pageId="0" pageNumber="85" rank="species" species="nigrovittata">S. nigrovittata</taxonomicName>
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. We sequenced three additional specimens from Mandalay (USNM 583124, USNM 583126, and MBM- USNM-FS 36020). These specimens were placed in their own COIBIN and in a 16S clade, nearly identical to two individuals identified as
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<taxonomicName id="7355D0B67028391C9792093980510D98" class="Amphibia" family="Ranidae" genus="Hylarana" higherTaxonomySource="CoL" kingdom="Animalia" lsidName="Hylarana" order="Anura" pageId="0" pageNumber="85" phylum="Chordata" rank="genus">Hylarana</taxonomicName>
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sp. C MS-2010 (AB543604-5,
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<bibRefCitation id="594740066F64E8545B1ABDD624E352A0" author="Hasan, M" journalOrPublisher="Zoological Science" pageId="0" pageNumber="85" pagination="162 - 172" title="Cryptic anuran biodiversity in Bangladesh revealed by mitochondrial 16 S rRNA gene sequences." url="http://dx.doi.org/10.2108/zsj.29.162" volume="29" year="2012 a">Hasan et al. 2012a</bibRefCitation>
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) from Bangladesh, and two sequences in GenBank (KR264116-7), from the same series as ours (USNM 583124-5) identified as
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<taxonomicName id="1EAD76681E0DB517EFA7767FCF22B7AF" class="Amphibia" family="Ranidae" genus="Sylvirana" higherTaxonomySource="CoL" kingdom="Animalia" lsidName="Sylvirana nigrovittata" order="Anura" pageId="0" pageNumber="85" phylum="Chordata" rank="species" species="nigrovittata">Sylvirana cf. nigrovittata</taxonomicName>
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(
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<bibRefCitation id="FB567955AF19E9958E809565C7DFD284" author="Oliver, LA" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="0" pageNumber="85" pagination="176 - 192" title="Systematics and biogeography of the Hylarana frog (Anura: Ranidae) radiation across tropical Australasia, Southeast Asia, and Africa." url="http://dx.doi.org/10.1016/j.ympev.2015.05.001" volume="90" year="2015">Oliver et al. 2015</bibRefCitation>
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). Our sequences differ by two base-pairs from the ones in GenBank, including USNM 583124 (
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<bibRefCitation id="5924017C9C749BE0ED60D1CDA9260589" author="Oliver, LA" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="0" pageNumber="85" pagination="176 - 192" title="Systematics and biogeography of the Hylarana frog (Anura: Ranidae) radiation across tropical Australasia, Southeast Asia, and Africa." url="http://dx.doi.org/10.1016/j.ympev.2015.05.001" volume="90" year="2015">Oliver et al. 2015</bibRefCitation>
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). We sequenced this specimen twice and provide the raw trace files in BOLD. There are many other 16S sequences in GenBank identified as
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<taxonomicName id="E0B36EC8BF6CAB21EA4CF5416FE842B9" class="Amphibia" family="Ranidae" genus="Sylvirana" higherTaxonomySource="CoL" kingdom="Animalia" lsidName="Sylvirana nigrovittata" order="Anura" pageId="0" pageNumber="85" phylum="Chordata" rank="species" species="nigrovittata">Sylvirana nigrovittata</taxonomicName>
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elsewhere in the tree, but no other COI sequences to compare. Sheriden and Stuart (2018) described specimens of this clades as a new species
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<taxonomicName id="B512B75FA2B66E5A7E491A3C803067DD" lsidName="S. lacrima" pageId="0" pageNumber="85" rank="species" species="lacrima">S. lacrima</taxonomicName>
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, and our specimens fall out within this clade (not shown).
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |