179 lines
17 KiB
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179 lines
17 KiB
XML
<document id="BCC083E7048F34584B4787EF11E093B8" ID-CLB-Dataset="20676" ID-DOI="10.1099/ijsem.0.003109" ID-GBIF-Dataset="c3dc5f9c-9f76-4923-8268-e788461dedd5" ID-ISSN="1466-5034" ID-Zenodo-Dep="6048642" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644596996971" checkinUser="felipe" docAuthor="Li, Lei, Wang, Jie, Zhou, Yong-jun, Lin, Hou-wen & Lu, Yan-hua" docDate="2019" docId="03BD87ECFF99FFE83655FE690340FC80" docLanguage="en" docName="IntJSystEvolMicrobiol.69.1.99-104.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 69 (1)" docSource="http://dx.doi.org/10.1099/ijsem.0.003109" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Streptomyces reniochalinae Li & Wang & Zhou & Lin & Lu 2019, SP. NOV." docType="treatment" docVersion="8" lastPageNumber="103" masterDocId="FF84FF94FF9AFFEC356EFFC70119FF92" masterDocTitle="Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges" masterLastPageNumber="104" masterPageNumber="99" pageNumber="102" updateTime="1699310162744" updateUser="ExternalLinkService">
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<mods:title id="AA1FD370365904F766DF2BB187299E75">Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges</mods:title>
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<mods:namePart id="2C1020E0A2C5B92FE5B8CD1B8087BA97">Li, Lei</mods:namePart>
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<mods:namePart id="E83A586301EA300A6B0C49402056AF98">Wang, Jie</mods:namePart>
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<mods:namePart id="D256676DA8D88D4E416F8AC6EE8CD00F">Zhou, Yong-jun</mods:namePart>
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<mods:namePart id="CC5F76AA8EEAB117AD2A7016910E6155">Lin, Hou-wen</mods:namePart>
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<mods:namePart id="AF4CF08E7955F0FA7F20618FDE637D4B">Lu, Yan-hua</mods:namePart>
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<mods:title id="DCD7DCF557C0AE35C0B18CC63163A12D">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:date id="D95E891F6CD87A8411B5ECCEEB69C89B">2019</mods:date>
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<treatment id="03BD87ECFF99FFE83655FE690340FC80" ID-DOI="http://doi.org/10.5281/zenodo.6309521" ID-GBIF-Taxon="193365091" ID-Zenodo-Dep="6309521" LSID="urn:lsid:plazi:treatment:03BD87ECFF99FFE83655FE690340FC80" httpUri="http://treatment.plazi.org/id/03BD87ECFF99FFE83655FE690340FC80" lastPageId="4" lastPageNumber="103" pageId="3" pageNumber="102">
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<subSubSection id="C30E6571FF99FFEF3655FE690584FE62" pageId="3" pageNumber="102" type="nomenclature">
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<paragraph id="8BAB36FAFF99FFEF3655FE690584FE62" blockId="3.[827,1465,430,1102]" pageId="3" pageNumber="102">
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<heading id="D0E38196FF99FFEF3655FE690584FE62" allCaps="true" bold="true" fontSize="12" level="2" pageId="3" pageNumber="102" reason="3">
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<emphasis id="B960EAE8FF99FFEF3655FE690584FE62" bold="true" pageId="3" pageNumber="102">
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DESCRIPTION OF
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<taxonomicName id="4C144D79FF99FFEF315EFE690500FE62" authority="Li & Wang & Zhou & Lin & Lu, 2019" authorityName="Li & Wang & Zhou & Lin & Lu" authorityYear="2019" class="Actinobacteridae" family="Streptomycetaceae" genus="Streptomyces" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="102" phylum="Actinobacteria" rank="species" species="reniochalinae" status="sp. nov.">
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<emphasis id="B960EAE8FF99FFEF315EFE690500FE62" bold="true" italics="true" pageId="3" pageNumber="102">STREPTOMYCES RENIOCHALINAE</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A2535793FF99FFEF314CFE140584FE62" box="[1058,1181,467,496]" pageId="3" pageNumber="102" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</paragraph>
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<subSubSection id="C30E6571FF99FFEF3655FE3802A2FDC6" pageId="3" pageNumber="102" type="etymology">
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<paragraph id="8BAB36FAFF99FFEF3655FE3802A2FDC6" blockId="3.[827,1465,430,1102]" pageId="3" pageNumber="102">
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<taxonomicName id="4C144D79FF99FFEF3655FE380545FD85" authorityName="Li & Wang & Zhou & Lin & Lu" authorityYear="2019" box="[827,1116,511,535]" class="Actinobacteridae" family="Streptomycetaceae" genus="Streptomyces" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="102" phylum="Actinobacteria" rank="species" species="reniochalinae">
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<emphasis id="B960EAE8FF99FFEF3655FE380545FD85" box="[827,1116,511,535]" italics="true" pageId="3" pageNumber="102">Streptomyces reniochalinae</emphasis>
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</taxonomicName>
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(re.ni.o.cha′ li.nae. N.L. gen. n.
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<taxonomicName id="4C144D79FF99FFEF3655FDDA02D1FDA7" authorityName="Li & Wang & Zhou & Lin & Lu" authorityYear="2019" box="[827,968,541,565]" class="Actinobacteridae" family="Streptomycetaceae" genus="Streptomyces" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="102" phylum="Actinobacteria" rank="species" species="reniochalinae">
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<emphasis id="B960EAE8FF99FFEF3655FDDA02D1FDA7" box="[827,968,541,565]" italics="true" pageId="3" pageNumber="102">reniochalinae</emphasis>
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</taxonomicName>
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of the marine sponge
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<taxonomicName id="4C144D79FF99FFEF305EFDDA02B2FDC6" authorityName="Lendenfeld" authorityYear="1888" class="Demospongiae" family="Axinellidae" genus="Reniochalina" kingdom="Animalia" order="Axinellida" pageId="3" pageNumber="102" phylum="Porifera" rank="species" species="stalagmitis">
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<emphasis id="B960EAE8FF99FFEF305EFDDA02B2FDC6" italics="true" pageId="3" pageNumber="102">Reniochalina stalagmitis</emphasis>
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</taxonomicName>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="C30E6571FF99FFE83655FDAC0340FC80" lastPageId="4" lastPageNumber="103" pageId="3" pageNumber="102" type="description">
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<paragraph id="8BAB36FAFF99FFE83655FDAC01CAFDD5" blockId="3.[827,1465,430,1102]" lastBlockId="4.[121,760,182,786]" lastPageId="4" lastPageNumber="103" pageId="3" pageNumber="102">
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Aerobic, Gram-stain-positive, non-motile, non-acid–alcohol-fast actinomycete that forms extensively branched substrate mycelia and white aerial hyphae which differentiated into chains of smooth-surfaced spores. Growths occurs at 20–40
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<superScript id="7C619BB2FF99FFEF36EEFD24029EFD7C" attach="right" box="[896,903,739,750]" fontSize="6" pageId="3" pageNumber="102">Ǫ</superScript>
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C and at pH 6.0–11.0 with 0–15% NaCl. Gelatin, and Tweens 40 and 60 are degraded, but CMC, aesculin and Tween 80 are not. Degradation of Tween 20 and starch are weakly positive. Milk coagulation, peptonization and nitrate reduction are positive. Utilizes
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<subScript id="179034BFFF99FFEF31EDFCA1058DFCEA" attach="right" box="[1155,1172,864,888]" fontSize="7" pageId="3" pageNumber="102">L-</subScript>
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arabinose,
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<subScript id="179034BFFF99FFEF3067FCA10407FCEA" attach="right" box="[1289,1310,864,888]" fontSize="7" pageId="3" pageNumber="102">D-</subScript>
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arabinose, cellobiose, D- fructose, D- galactose, D- glucose, glycerol, lactose, maltose, D- mannitol, D- mannose, melibiose, L- rhamnose, D-ribose, trehalose,
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<subScript id="179034BFFF99FFEF369AFC050510FC46" attach="right" box="[1012,1033,956,980]" fontSize="7" pageId="3" pageNumber="102">D-</subScript>
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xylose, sodium acetate, sodium pyruvate and sodium citrate as sole carbon sources; weakly utilizes inositol and raffinose, but not dulcitol,
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<subScript id="179034BFFF99FFEF31B6FC3805F4FB83" attach="right" box="[1240,1261,1017,1041]" fontSize="7" pageId="3" pageNumber="102">D-</subScript>
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sorbitol, sucrose or D- xylitol. Utilizes L- glutamine, L- lysine, L- proline, L- serine and L- threoninexanthine as sole nitrogen sources; weakly utilizes L- alanine, L- arginine, L- asparagine, glycine, L- histidine, hypoxanthine, L- hydroxyproline and L- leucine, but not adenine, L- aspartic acid, L- cystenine, L- glutamic acid, L-methionine, L- phenylalanine, L- tryptophan, L- tyrosine or L-valine. The cell wall contains LL- diaminopimelic acid and the whole-cell sugars are galactose, glucose and ribose. Diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol are the predominant polar lipids. The menaquinone system contains MK-9(H
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<subScript id="179034BFFF9EFFE83748FE7C0329FE5E" attach="left" box="[550,560,443,460]" fontSize="7" pageId="4" pageNumber="103">6</subScript>
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) as a major component, and MK-9(H
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<subScript id="179034BFFF9EFFE8340AFE1D0077FE79" attach="left" box="[356,366,474,491]" fontSize="7" pageId="4" pageNumber="103">4</subScript>
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) and MK-9(H
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<subScript id="179034BFFF9EFFE8377CFE1D0305FE79" attach="left" box="[530,540,474,491]" fontSize="7" pageId="4" pageNumber="103">8</subScript>
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) as minorities. The major fatty acids are iso-C
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<subScript id="179034BFFF9EFFE834CEFE3D00D1FD99" attach="left" box="[416,456,506,523]" fontSize="7" pageId="4" pageNumber="103">16: 0</subScript>
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, anteiso-C
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<subScript id="179034BFFF9EFFE83750FE3D037FFD99" attach="left" box="[574,614,506,523]" fontSize="7" pageId="4" pageNumber="103">15: 0</subScript>
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and anteiso-C
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<subScript id="179034BFFF9EFFE835E4FDDE01ABFDB8" attach="left" box="[138,178,537,554]" fontSize="7" pageId="4" pageNumber="103">17: 0</subScript>
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. The G+C content is 71.9 mol% of the 7.6 Mb draft genome.
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</paragraph>
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<caption id="DF6B6672FF99FFEF35D6F8C70410F8EF" ID-DOI="http://doi.org/10.5281/zenodo.6048650" ID-Zenodo-Dep="6048650" httpUri="https://zenodo.org/record/6048650/files/figure.png" pageId="3" pageNumber="102" startId="3.[184,214,1792,1811]" targetBox="[317,1269,1160,1733]" targetPageId="3">
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<paragraph id="8BAB36FAFF99FFEF35D6F8C70410F8EF" blockId="3.[184,1396,1790,1917]" pageId="3" pageNumber="102">
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<emphasis id="B960EAE8FF99FFEF35D6F8C701E1F881" bold="true" box="[184,248,1792,1811]" pageId="3" pageNumber="102">Fig. 3.</emphasis>
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Neighbour-joining tree based on five-gene concatenated sequences (
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<emphasis id="B960EAE8FF99FFEF3606F9380289F880" box="[872,912,1791,1810]" italics="true" pageId="3" pageNumber="102">atpD</emphasis>
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,
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<emphasis id="B960EAE8FF99FFEF36F4F93802DBF880" box="[922,962,1791,1810]" italics="true" pageId="3" pageNumber="102">gyrB</emphasis>
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,
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<emphasis id="B960EAE8FF99FFEF36A3F93802ECF880" box="[973,1013,1791,1810]" italics="true" pageId="3" pageNumber="102">recA</emphasis>
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,
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<emphasis id="B960EAE8FF99FFEF3691F9380531F880" box="[1023,1064,1791,1810]" italics="true" pageId="3" pageNumber="102">rpoB</emphasis>
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and
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<emphasis id="B960EAE8FF99FFEF313BF9380563F880" box="[1109,1146,1791,1810]" italics="true" pageId="3" pageNumber="102">trpB</emphasis>
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, 2454 nt) showing the relationships between strains LHW50302
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<superScript id="7C619BB2FF99FFEF3767F8D20308F8B0" attach="none" box="[521,529,1813,1826]" fontSize="5" pageId="3" pageNumber="102">T</superScript>
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, LHW51701
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<superScript id="7C619BB2FF99FFEF3710F8D2039FF8B0" attach="left" box="[638,646,1813,1826]" fontSize="5" pageId="3" pageNumber="102">T</superScript>
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and related members of the genus
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<emphasis id="B960EAE8FF99FFEF36A1F8DD0552F8BF" box="[975,1099,1818,1837]" italics="true" pageId="3" pageNumber="102">
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<taxonomicName id="4C144D79FF99FFEF36A1F8DD0551F8BF" box="[975,1096,1818,1837]" class="Actinobacteridae" family="Streptomycetaceae" genus="Streptomyces" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="102" phylum="Actinobacteria" rank="genus">Streptomyces</taxonomicName>
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.
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</emphasis>
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<taxonomicName id="4C144D79FF99FFEF313EF8DD046DF8BF" authority="NRRL" authorityName="NRRL" box="[1104,1396,1817,1837]" class="Actinobacteridae" family="Streptomycetaceae" genus="Kitasatospora" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="102" phylum="Actinobacteria" rank="species" species="aburaviensis">
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<emphasis id="B960EAE8FF99FFEF313EF8DD0423F8BF" box="[1104,1338,1818,1837]" italics="true" pageId="3" pageNumber="102">Kitasatospora aburaviensis</emphasis>
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NRRL
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</taxonomicName>
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B-2218
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<superScript id="7C619BB2FF99FFEF3594F8F7001BF8AF" attach="left" box="[250,258,1840,1853]" fontSize="5" pageId="3" pageNumber="102">T</superScript>
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was used as an outgroup. Numbers at nodes indicate levels of bootstrap support (%) based on neighbour-joining analysis of 1000 resampled datasets; only values above 50 % are shown. Asterisks (*) and crosses (‡) indicate branches that were also found using the maximum-likelihood method and the maximum-parsimony method, respectively. Bar, 0.02 substitutions per site.
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</paragraph>
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</caption>
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<paragraph id="8BAB36FAFF9EFFE83517FD9A0340FC80" blockId="4.[121,760,182,786]" pageId="4" pageNumber="103">
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<materialsCitation id="3B7C3CA7FF9EFFE83517FD9A034CFC80" ID-GBIF-Occurrence="3465773302" accessionNumber="LHW50302, KX347891" country="China" location="China" pageId="4" pageNumber="103" specimenCount="2" typeStatus="holotype">
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The
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<typeStatus id="54AF8858FF9EFFE835C7FD9901CFFDE4" box="[169,214,606,630]" pageId="4" pageNumber="103">type</typeStatus>
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strain, LHW50302
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<superScript id="7C619BB2FF9EFFE834CDFD9000B6FDFA" attach="left" box="[419,431,599,616]" fontSize="7" pageId="4" pageNumber="103">T</superScript>
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(=DSM 106194
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<superScript id="7C619BB2FF9EFFE83737FD90037CFDFA" attach="none" box="[601,613,599,616]" fontSize="7" pageId="4" pageNumber="103">T</superScript>
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=CCTCC AA 2018013
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<superScript id="7C619BB2FF9EFFE835BCFDB101C7FD15" attach="none" box="[210,222,630,647]" fontSize="7" pageId="4" pageNumber="103">T</superScript>
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), was isolated from a
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<taxonomicName id="4C144D79FF9EFFE83481FDBB03EFFD06" authorityName="Lendenfeld" authorityYear="1888" box="[495,758,636,660]" class="Demospongiae" family="Axinellidae" genus="Reniochalina" kingdom="Animalia" order="Axinellida" pageId="4" pageNumber="103" phylum="Porifera" rank="species" species="stalagmitis">
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<emphasis id="B960EAE8FF9EFFE83481FDBB03EFFD06" box="[495,758,636,660]" italics="true" pageId="4" pageNumber="103">Reniochalina stalagmitis</emphasis>
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</taxonomicName>
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marine sponge collected in the South
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<collectingCountry id="F303766AFF9EFFE8377AFD5B034DFD26" box="[532,596,668,692]" name="China" pageId="4" pageNumber="103">China</collectingCountry>
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Sea. The GenBank accession number for the 16S rRNA gene sequence and the draft genome sequence of the type strain are
|
||
<accessionNumber id="9447AB19FF9EFFE83517FD3D01F1FC80" box="[121,232,762,786]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/KX347891" pageId="4" pageNumber="103">KX347891</accessionNumber>
|
||
and QOIM00000000, respectively
|
||
</materialsCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |