170 lines
13 KiB
XML
170 lines
13 KiB
XML
<document ID-DOI="10.1093/gbe/evaa212" ID-GBIF-Dataset="f572993a-25e4-44bf-80f8-2b9075a81a29" ID-PMC="PMC7846144" ID-PubMed="33022031" ID-Zenodo-Dep="4561628" approvalRequired="5" approvalRequired_for_document="1" approvalRequired_for_textStreams="4" checkinTime="1614243439518" checkinUser="donat" docAuthor="Chambers, James, Sparks, Natalie, Sydney, Natashia, Livingstone, Paul G, Cookson, Alan R & Whitworth, David E" docDate="2020" docId="03A729036475D737FC81FAEEFDC20A21" docLanguage="en" docName="genomeBioEvol.evaa212.pdf" docOrigin="Genome Biology and Evolution 12 (12)" docSource="http://dx.doi.org/10.1093/gbe/evaa212" docTitle="Myxococcus vastator Chambers & Sparks & Sydney & Livingstone & Cookson & Whitworth 2020, sp. nov." docType="treatment" docVersion="6" lastPageNumber="2300" masterDocId="FF9E517B647ED73BFFBDFFC1FFC10B09" masterDocTitle="Comparative Genomics and Pan-Genomics of the Myxococcaceae, including a Description of Five Novel Species: Myxococcus eversor sp. nov., Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis sp. nov., Myxococcus vastator sp. nov., Pyxidicoccus caerfyrddinensis sp. nov., and Pyxidicoccus trucidator sp. nov." masterLastPageNumber="2302" masterPageNumber="2289" pageNumber="2300" updateTime="1668128921393" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0" zenodo-license-treatments="CC0-1.0">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Comparative Genomics and Pan-Genomics of the Myxococcaceae, including a Description of Five Novel Species: Myxococcus eversor sp. nov., Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis sp. nov., Myxococcus vastator sp. nov., Pyxidicoccus caerfyrddinensis sp. nov., and Pyxidicoccus trucidator sp. nov.</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Chambers, James</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Sparks, Natalie</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Sydney, Natashia</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Livingstone, Paul G</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Cookson, Alan R</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Whitworth, David E</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:titleInfo>
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<mods:title>Genome Biology and Evolution</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2020</mods:date>
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<mods:detail type="pubDate">
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<mods:number>2020-10-06</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>12</mods:number>
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</mods:detail>
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<mods:detail type="issue">
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<mods:number>12</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>2289</mods:start>
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<mods:end>2302</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:location>
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<mods:url>http://dx.doi.org/10.1093/gbe/evaa212</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">10.1093/gbe/evaa212</mods:identifier>
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<mods:identifier type="GBIF-Dataset">f572993a-25e4-44bf-80f8-2b9075a81a29</mods:identifier>
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<mods:identifier type="PMC">PMC7846144</mods:identifier>
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<mods:identifier type="PubMed">33022031</mods:identifier>
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<mods:identifier type="Zenodo-Dep">4561628</mods:identifier>
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<treatment ID-DOI="http://doi.org/10.5281/zenodo.4561647" ID-GBIF-Taxon="179910678" ID-Zenodo-Dep="4561647" LSID="urn:lsid:plazi:treatment:03A729036475D737FC81FAEEFDC20A21" httpUri="http://treatment.plazi.org/id/03A729036475D737FC81FAEEFDC20A21" lastPageId="12" lastPageNumber="2300" pageId="11" pageNumber="2300">
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<subSubSection box="[828,1147,1327,1351]" pageId="11" pageNumber="2300" type="nomenclature">
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<paragraph blockId="11.[828,1147,1327,1351]" box="[828,1147,1327,1351]" pageId="11" pageNumber="2300">
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<taxonomicName authority="Chambers & Sparks & Sydney & Livingstone & Cookson & Whitworth, 2020" authorityName="Chambers & Sparks & Sydney & Livingstone & Cookson & Whitworth" authorityYear="2020" box="[828,1052,1327,1351]" class="Deltaproteobacteria" family="Myxococcaceae" genus="Myxococcus" kingdom="Bacteria" order="Myxococcales" pageId="11" pageNumber="2300" phylum="Proteobacteria" rank="species" species="vastator" status="sp. nov.">
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<emphasis box="[828,1052,1327,1351]" italics="true" pageId="11" pageNumber="2300">Myxococcus vastator</emphasis>
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</taxonomicName>
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<taxonomicNameLabel box="[1060,1147,1327,1351]" pageId="11" pageNumber="2300" rank="species">sp. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="2300" type="etymology">
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<paragraph blockId="11.[828,1461,1371,1906]" pageId="11" pageNumber="2300">
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<taxonomicName authorityName="Chambers & Sparks & Sydney & Livingstone & Cookson & Whitworth" authorityYear="2020" box="[828,1042,1371,1394]" class="Deltaproteobacteria" family="Myxococcaceae" genus="Myxococcus" kingdom="Bacteria" order="Myxococcales" pageId="11" pageNumber="2300" phylum="Proteobacteria" rank="species" species="vastator">
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<emphasis box="[828,1042,1371,1394]" italics="true" pageId="11" pageNumber="2300">Myxococcus vastator</emphasis>
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</taxonomicName>
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(vas.ta’tor L. masc. n.
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<taxonomicName authorityName="Chambers & Sparks & Sydney & Livingstone & Cookson & Whitworth" authorityYear="2020" box="[1285,1366,1371,1394]" class="Deltaproteobacteria" family="Myxococcaceae" genus="Myxococcus" kingdom="Bacteria" order="Myxococcales" pageId="11" pageNumber="2300" phylum="Proteobacteria" rank="species" species="vastator">
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<emphasis box="[1285,1366,1371,1394]" italics="true" pageId="11" pageNumber="2300">vastator</emphasis>
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</taxonomicName>
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the ravager, after its ability to devastate colonies of prey cells).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="2300" type="description">
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<paragraph blockId="11.[828,1461,1371,1906]" pageId="11" pageNumber="2300">
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Vegetative cells are Gram-negative bacilli tapering slightly at the ends, measuring
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<quantity box="[1072,1168,1466,1490]" metricMagnitude="-1" metricUnit="m" metricValue="6.499999999999999" metricValueMax="7.0" metricValueMin="6.0" pageId="11" pageNumber="2300" unit="m" value="0.6499999999999999" valueMax="0.7" valueMin="0.6">
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0.6–0.7
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<emphasis bold="true" box="[1155,1168,1466,1490]" pageId="11" pageNumber="2300">m</emphasis>
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</quantity>
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m 3.0–6.0
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<emphasis bold="true" box="[1306,1319,1466,1490]" pageId="11" pageNumber="2300">m</emphasis>
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m in electron micrographs. Colonies exhibit swarming motility and appear pale brown on VY-2 agar (w/v 0.5% dried baker’s yeast, 0.1% CaCl
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<subScript attach="left" box="[942,952,1573,1588]" fontSize="6" pageId="11" pageNumber="2300">2</subScript>
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2H
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<subScript attach="both" box="[989,999,1573,1588]" fontSize="6" pageId="11" pageNumber="2300">2</subScript>
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O, and 1.5% agar). Fruiting bodies are irregular spheroids, orange in color. Aerobic growth was observed at 30 C and at pH 8.0–9.0. Growth was unaffected by the addition of 1% NaCl. Hydrolyzes arginine and urea. Assimilates malate. Cells prey with low efficiency upon
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<taxonomicName authority="TOP" authorityName="TOP" box="[828,952,1723,1746]" class="Gammaproteobacteria" family="Enterobacteriaceae" genus="Escherichia" kingdom="Bacteria" order="Enterobacteriales" pageId="11" pageNumber="2300" phylum="Proteobacteria" rank="species" species="coli">
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<emphasis box="[828,892,1723,1746]" italics="true" pageId="11" pageNumber="2300">E. coli</emphasis>
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TOP
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</taxonomicName>
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10,
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<taxonomicName authority="DSM" authorityName="DSM" box="[989,1218,1723,1746]" family="Microbacteriaceae" genus="Clavibacter" kingdom="Bacteria" order="Actinomycetales" pageId="11" pageNumber="2300" phylum="Actinobacteria" rank="species" species="nebraskensis">
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<emphasis box="[989,1157,1723,1746]" italics="true" pageId="11" pageNumber="2300">Cl. nebraskensis</emphasis>
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DSM
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</taxonomicName>
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7483, and
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<taxonomicName authority="DSM" authorityName="DSM" class="Ustilaginomycetes" family="Ustilaginaceae" genus="Ustilago" kingdom="Chromista" order="Ustilaginales" pageId="11" pageNumber="2300" phylum="Basidiomycota" rank="species" species="maydis">
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<emphasis box="[1351,1456,1723,1746]" italics="true" pageId="11" pageNumber="2300">U. maydis</emphasis>
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<accessionNumber box="[828,958,1755,1778]" httpUri="http://www.ncbi.nlm.nih.gov/protein/DSM14603" pageId="11" pageNumber="2300">DSM 14603</accessionNumber>
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</taxonomicName>
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.
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</paragraph>
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<paragraph blockId="11.[828,1461,1371,1906]" lastBlockId="12.[138,766,241,296]" lastPageId="12" lastPageNumber="2301" pageId="11" pageNumber="2300">
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<materialsCitation ID-GBIF-Occurrence="3042655302" collectionCode="GC, T" pageId="11" pageNumber="2300" specimenCode="AM301, NCCB 100768, NBBC 114352" specimenCount="1">
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DNA
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<collectionCode box="[918,953,1787,1810]" country="0" name="Goucher College" pageId="11" pageNumber="2300">GC</collectionCode>
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content is 69.9 mol%. The draft genome sequence of
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<specimenCode box="[951,1029,1819,1842]" collectionCode="AM" country="Australia" name="Australian Museum" pageId="11" pageNumber="2300" type="Museum">AM301</specimenCode>
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</superScript>
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is available from GenBank (accession JAAIYB01). The
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<typeStatus box="[1002,1047,1851,1874]" pageId="11" pageNumber="2300">type</typeStatus>
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strain (
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<specimenCode box="[1131,1210,1851,1874]" collectionCode="AM" country="Australia" name="Australian Museum" pageId="11" pageNumber="2300" type="Museum">AM301</specimenCode>
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<collectionCode box="[1210,1219,1845,1860]" name="Tavera, Department of Geology and Geophysics" pageId="11" pageNumber="2300">T</collectionCode>
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</superScript>
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<emphasis bold="true" box="[1230,1255,1850,1874]" pageId="11" pageNumber="2300">¼</emphasis>
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<specimenCode box="[1261,1416,1851,1874]" collectionCode="NCCB" country="Netherlands" httpUri="http://grbio.org/cool/55bq-g78i" name="The Netherlands Culture Collection of Bacteria (formerly LMD and Phabagen Collection)" pageId="11" pageNumber="2300">NCCB 100768</specimenCode>
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<superScript attach="left" box="[1416,1425,1845,1860]" fontSize="6" pageId="11" pageNumber="2300">
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<collectionCode box="[1416,1425,1845,1860]" name="Tavera, Department of Geology and Geophysics" pageId="11" pageNumber="2300">T</collectionCode>
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</superScript>
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<emphasis bold="true" box="[1436,1461,1850,1874]" pageId="11" pageNumber="2300">¼</emphasis>
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<specimenCode box="[828,976,1883,1906]" collectionCode="NBBC" pageId="11" pageNumber="2300">NBBC 114352</specimenCode>
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<superScript attach="none" box="[975,984,1877,1892]" fontSize="6" pageId="11" pageNumber="2300">
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<collectionCode box="[975,984,1877,1892]" name="Tavera, Department of Geology and Geophysics" pageId="11" pageNumber="2300">T</collectionCode>
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</superScript>
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) was
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<subSubSection lastPageId="12" lastPageNumber="2301" pageId="11" pageNumber="2300" type="materials_examined">
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isolated from soil collected in the parish
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<materialsCitation ID-GBIF-Occurrence="3042655306" country="United Kingdom" latitude="53.22" location="Llanfairpwllgwyngyllgogerychwyrndrobwlll" longLatPrecision="647" longitude="-4.19" pageId="12" pageNumber="2301" specimenCount="1">
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of
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<location LSID="urn:lsid:plazi:treatment:03A729036475D737FC81FAEEFDC20A21:8ED1CECE6472D737FF14FF30FDA10A01" box="[169,608,241,264]" country="United Kingdom" latitude="53.22" longLatPrecision="647" longitude="-4.19" name="Llanfairpwllgwyngyllgogerychwyrndrobwlll" pageId="12" pageNumber="2301">Llanfairpwllgwyngyllgogerychwyrndrobwlll</location>
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lantysiliogogogoch,
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<collectingCountry box="[204,236,273,296]" name="United Kingdom" pageId="12" pageNumber="2301">UK</collectingCountry>
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(gridref
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<geoCoordinate box="[325,412,273,296]" degrees="53.22" direction="north" orientation="latitude" pageId="12" pageNumber="2301" precision="555" value="53.22">53.22 N</geoCoordinate>
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<geoCoordinate box="[419,504,273,296]" degrees="4.19" direction="west" orientation="longitude" pageId="12" pageNumber="2301" precision="555" value="-4.19">4.19 W</geoCoordinate>
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)
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</materialsCitation>
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.
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</subSubSection>
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</materialsCitation>
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |