193 lines
15 KiB
XML
193 lines
15 KiB
XML
<document ID-DOI="https://doi.org/10.3767/persoonia.2019.43.02" ID-GBIF-Dataset="7e041cd7-75f6-4285-a8b0-d4aa85967ca0" ID-PMC="PMC7085855" ID-PubMed="32214497" ID-Zenodo-Dep="3565708" checkinTime="1575644186748" checkinUser="plazi" docAuthor="Maryani, N., Sandoval-Denis, M., Lombard, L., Crous, P. W. & Kema, G. H. J." docDate="2019" docId="0391CB210B52866FFCDCFD290DDF90D2" docLanguage="en" docName="persoonia_fusarium_on_banana_1552560214027.pdf" docOrigin="Persoonia 43" docStyle="DocumentStyle{}" docTitle="Fusarium sambucinum Fuckel 1870" docType="treatment" docVersion="5" lastPageNumber="59" masterDocId="FFA8B3590B588664FFE4FFCA0D379126" masterDocTitle="New endemic Fusarium species hitch-hiking with pathogenic Fusarium strains causing Panama disease in small-holder banana plots in Indonesia" masterLastPageNumber="69" masterPageNumber="48" pageNumber="58" updateTime="1668138949826" updateUser="ExternalLinkService">
|
|
<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
|
|
<mods:titleInfo>
|
|
<mods:title>New endemic Fusarium species hitch-hiking with pathogenic Fusarium strains causing Panama disease in small-holder banana plots in Indonesia</mods:title>
|
|
</mods:titleInfo>
|
|
<mods:name type="personal">
|
|
<mods:role>
|
|
<mods:roleTerm>Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart>Maryani, N.</mods:namePart>
|
|
</mods:name>
|
|
<mods:name type="personal">
|
|
<mods:role>
|
|
<mods:roleTerm>Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart>Sandoval-Denis, M.</mods:namePart>
|
|
</mods:name>
|
|
<mods:name type="personal">
|
|
<mods:role>
|
|
<mods:roleTerm>Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart>Lombard, L.</mods:namePart>
|
|
</mods:name>
|
|
<mods:name type="personal">
|
|
<mods:role>
|
|
<mods:roleTerm>Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart>Crous, P. W.</mods:namePart>
|
|
</mods:name>
|
|
<mods:name type="personal">
|
|
<mods:role>
|
|
<mods:roleTerm>Author</mods:roleTerm>
|
|
</mods:role>
|
|
<mods:namePart>Kema, G. H. J.</mods:namePart>
|
|
</mods:name>
|
|
<mods:typeOfResource>text</mods:typeOfResource>
|
|
<mods:relatedItem type="host">
|
|
<mods:titleInfo>
|
|
<mods:title>Persoonia</mods:title>
|
|
</mods:titleInfo>
|
|
<mods:part>
|
|
<mods:date>2019</mods:date>
|
|
<mods:detail type="pubDate">
|
|
<mods:number>2019-03-14</mods:number>
|
|
</mods:detail>
|
|
<mods:detail type="volume">
|
|
<mods:number>43</mods:number>
|
|
</mods:detail>
|
|
<mods:extent unit="page">
|
|
<mods:start>48</mods:start>
|
|
<mods:end>69</mods:end>
|
|
</mods:extent>
|
|
</mods:part>
|
|
</mods:relatedItem>
|
|
<mods:classification>journal article</mods:classification>
|
|
<mods:identifier type="DOI">https://doi.org/10.3767/persoonia.2019.43.02</mods:identifier>
|
|
<mods:identifier type="GBIF-Dataset">7e041cd7-75f6-4285-a8b0-d4aa85967ca0</mods:identifier>
|
|
<mods:identifier type="PMC">PMC7085855</mods:identifier>
|
|
<mods:identifier type="PubMed">32214497</mods:identifier>
|
|
<mods:identifier type="Zenodo-Dep">3565708</mods:identifier>
|
|
</mods:mods>
|
|
<treatment ID-DOI="http://doi.org/10.5281/zenodo.5613545" ID-GBIF-Taxon="160671857" ID-Zenodo-Dep="5613545" LSID="urn:lsid:plazi:treatment:0391CB210B52866FFCDCFD290DDF90D2" httpUri="http://treatment.plazi.org/id/0391CB210B52866FFCDCFD290DDF90D2" lastPageId="11" lastPageNumber="59" pageId="10" pageNumber="58">
|
|
<subSubSection box="[824,1474,739,762]" pageId="10" pageNumber="58" type="nomenclature">
|
|
<paragraph blockId="10.[824,1474,739,979]" box="[824,1474,739,762]" pageId="10" pageNumber="58">
|
|
<heading bold="true" box="[824,1474,739,762]" centered="true" fontSize="9" level="3" pageId="10" pageNumber="58" reason="0">
|
|
<emphasis bold="true" box="[824,1474,739,762]" italics="true" pageId="10" pageNumber="58">
|
|
<taxonomicName authorityName="Fuckel" authorityYear="1870" box="[824,1079,739,762]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="sambucinum">
|
|
<taxonomicName box="[824,929,739,762]" class="Dothideomycetes" family="Botryosphaeriaceae" genus="Fusarium" higherTaxonomySource="CoL" kingdom="Fungi" order="Botryosphaeriales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="genus">Fusarium</taxonomicName>
|
|
<taxonomicName box="[934,1079,739,762]" pageId="10" pageNumber="58" rank="species" species="sambucinum">sambucinum</taxonomicName>
|
|
</taxonomicName>
|
|
species complex (FSSC) phylogeny
|
|
</emphasis>
|
|
</heading>
|
|
</paragraph>
|
|
</subSubSection>
|
|
<subSubSection lastPageId="11" lastPageNumber="59" pageId="10" pageNumber="58" type="discussion">
|
|
<paragraph blockId="10.[824,1474,739,979]" pageId="10" pageNumber="58">
|
|
The single Indonesian isolate in the FSSC was further analysed using a two-gene phylogeny based on
|
|
<emphasis box="[1319,1367,807,830]" italics="true" pageId="10" pageNumber="58">rpb1</emphasis>
|
|
and
|
|
<emphasis box="[1426,1474,807,830]" italics="true" pageId="10" pageNumber="58">rpb2</emphasis>
|
|
sequences. The analysis included a total of 2 461 characters (
|
|
<emphasis box="[832,879,866,889]" italics="true" pageId="10" pageNumber="58">rpb1</emphasis>
|
|
854 and
|
|
<emphasis box="[971,1018,866,889]" italics="true" pageId="10" pageNumber="58">rpb2</emphasis>
|
|
1607) from a total of 21 isolates representing the FSSC and two outgroup taxa (
|
|
<taxonomicName box="[1193,1327,896,919]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="circinatum">
|
|
<emphasis box="[1193,1327,896,919]" italics="true" pageId="10" pageNumber="58">
|
|
<collectionCodeEnum box="[1193,1208,896,919]" pageId="10" pageNumber="58">F</collectionCodeEnum>
|
|
.
|
|
<taxonomicName box="[1218,1327,896,919]" pageId="10" pageNumber="58" rank="species" species="circinatum">circinatum</taxonomicName>
|
|
</emphasis>
|
|
</taxonomicName>
|
|
NRRL 25331 and
|
|
<taxonomicName box="[868,972,926,949]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="fujikuroi">
|
|
<emphasis box="[868,972,926,949]" italics="true" pageId="10" pageNumber="58">
|
|
<collectionCodeEnum box="[868,883,926,949]" pageId="10" pageNumber="58">F</collectionCodeEnum>
|
|
.
|
|
<taxonomicName box="[891,972,926,949]" pageId="10" pageNumber="58" rank="species" species="fujikuroi">fujikuroi</taxonomicName>
|
|
</emphasis>
|
|
</taxonomicName>
|
|
NRRL 13566). Isolate InaCC
|
|
<collectionCodeEnum box="[1275,1288,926,949]" pageId="10" pageNumber="58">
|
|
<collectionCode box="[1275,1288,926,949]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
|
|
</collectionCodeEnum>
|
|
974 was identified as
|
|
<taxonomicName box="[856,970,956,979]" class="Gastropoda" family="Ficidae" genus="Ficus" kingdom="Animalia" order="Littorinimorpha" pageId="10" pageNumber="58" phylum="Mollusca" rank="species" species="longipes">
|
|
<emphasis box="[856,970,956,979]" italics="true" pageId="10" pageNumber="58">
|
|
<collectionCodeEnum box="[856,871,956,979]" pageId="10" pageNumber="58">F</collectionCodeEnum>
|
|
.
|
|
<taxonomicName box="[881,970,956,979]" pageId="10" pageNumber="58" rank="species" species="longipes">longipes</taxonomicName>
|
|
</emphasis>
|
|
</taxonomicName>
|
|
(
|
|
<figureCitation box="[984,1047,956,979]" captionStart="Fig" captionStartId="9.[113,145,1128,1146]" captionText="Fig. 4 Maximum likelihood tree inferred from the combined rpb1 and rpb2 sequence datasets of the Fusarium sambucinum species complex (FSSC) including one Indonesian isolate InaCC F974 (indicated in blue). Bootstrap support values and Bayesian posterior probabilities are given at each node. The tree is rooted to Fusarium circinatum (NRRL 25331) and Fusarium fujikuroi (NRRL 13566)." pageId="10" pageNumber="58">Fig. 4</figureCitation>
|
|
) based on phylogenetic inference.
|
|
</paragraph>
|
|
<caption ID-DOI="http://doi.org/10.5281/zenodo.3565716" ID-Zenodo-Dep="3565716" httpUri="https://zenodo.org/record/3565716/files/figure.png" pageId="10" pageNumber="58" startId="10.[113,145,2060,2078]" targetBox="[151,1436,1078,2041]" targetPageId="10">
|
|
<paragraph blockId="10.[113,1475,2060,2155]" pageId="10" pageNumber="58">
|
|
<emphasis bold="true" box="[113,166,2060,2078]" pageId="10" pageNumber="58">Fig. 5</emphasis>
|
|
Pathogenicity test of
|
|
<taxonomicName box="[371,453,2060,2078]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="genus">
|
|
<emphasis box="[371,453,2060,2078]" italics="true" pageId="10" pageNumber="58">Fusarium</emphasis>
|
|
</taxonomicName>
|
|
spp. that belong to other species complexes. a. Plants before inoculation; b. wilting symptom caused by
|
|
<taxonomicName authorityName="Maryani, L.Lombard, Kema & Crous" authorityYear="2018" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="odoratissimum">
|
|
<emphasis italics="true" pageId="10" pageNumber="58">Fusarium odoratissimum</emphasis>
|
|
</taxonomicName>
|
|
InaCC F856, seven weeks after inoculation; c. control; d. positive control
|
|
<taxonomicName authorityName="Maryani, L.Lombard, Kema & Crous" authorityYear="2018" box="[900,1117,2086,2104]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="odoratissimum">
|
|
<emphasis box="[900,1117,2086,2104]" italics="true" pageId="10" pageNumber="58">Fusarium odoratissimum</emphasis>
|
|
</taxonomicName>
|
|
(InaCC F856); e.
|
|
<taxonomicName box="[1281,1474,2086,2104]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="proliferatum">
|
|
<emphasis box="[1281,1474,2086,2104]" italics="true" pageId="10" pageNumber="58">Fusarium proliferatum</emphasis>
|
|
</taxonomicName>
|
|
(InaCC F992); f.
|
|
<taxonomicName box="[260,473,2111,2129]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="desaboruense">
|
|
<emphasis box="[260,473,2111,2129]" italics="true" pageId="10" pageNumber="58">Fusarium desaboruense</emphasis>
|
|
</taxonomicName>
|
|
(InaCC F950); g.
|
|
<taxonomicName box="[631,841,2111,2129]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="lumajangense">
|
|
<emphasis box="[631,841,2111,2129]" italics="true" pageId="10" pageNumber="58">Fusarium lumajangense</emphasis>
|
|
</taxonomicName>
|
|
(InaCC F872 T); h.
|
|
<taxonomicName authorityName="Wollenw. & Reinking" authorityYear="1925" box="[1008,1169,2111,2129]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="longipes">
|
|
<emphasis box="[1008,1169,2111,2129]" italics="true" pageId="10" pageNumber="58">Fusarium longipes</emphasis>
|
|
</taxonomicName>
|
|
(InaCC F974); i. FIESC (Indo161); j.
|
|
<taxonomicName box="[129,339,2137,2155]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="lumajangense">
|
|
<emphasis box="[129,339,2137,2155]" italics="true" pageId="10" pageNumber="58">Fusarium lumajangense</emphasis>
|
|
</taxonomicName>
|
|
(InaCC F993).
|
|
</paragraph>
|
|
</caption>
|
|
<paragraph blockId="11.[113,764,176,441]" box="[113,270,176,199]" pageId="11" pageNumber="59">
|
|
<heading bold="true" box="[113,270,176,199]" fontSize="9" level="2" pageId="11" pageNumber="59" reason="0">
|
|
<emphasis bold="true" box="[113,270,176,199]" italics="true" pageId="11" pageNumber="59">Pathogenicity</emphasis>
|
|
</heading>
|
|
</paragraph>
|
|
<paragraph blockId="11.[113,764,176,441]" pageId="11" pageNumber="59">
|
|
Representative isolates from each species complex were tested for their pathogenicity against banana variety Cavendish (
|
|
<figureCitation box="[120,185,272,295]" captionStart="Fig" captionStartId="10.[113,145,2060,2078]" captionTargetBox="[151,1436,1078,2041]" captionTargetId="figure@10.[151,1436,1078,2041]" captionTargetPageId="10" captionText="Fig. 5 Pathogenicity test of Fusarium spp. that belong to other species complexes. a. Plants before inoculation; b. wilting symptom caused by Fusarium odoratissimum InaCC F856, seven weeks after inoculation; c. control; d. positive control Fusarium odoratissimum (InaCC F856); e. Fusarium proliferatum (InaCC F992); f. Fusarium desaboruense (InaCC F950); g. Fusarium lumajangense (InaCC F872T); h. Fusarium longipes (InaCC F974); i. FIESC (Indo161); j. Fusarium lumajangense (InaCC F993)." figureDoi="http://doi.org/10.5281/zenodo.3565716" httpUri="https://zenodo.org/record/3565716/files/figure.png" pageId="11" pageNumber="59">Fig. 5</figureCitation>
|
|
). Selected isolates included InaCC
|
|
<collectionCodeEnum box="[560,574,272,295]" pageId="11" pageNumber="59">
|
|
<collectionCode box="[560,574,272,295]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="11" pageNumber="59" type="Herbarium">F</collectionCode>
|
|
</collectionCodeEnum>
|
|
872, InaCC
|
|
<collectionCodeEnum box="[702,716,272,295]" pageId="11" pageNumber="59">
|
|
<collectionCode box="[702,716,272,295]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="11" pageNumber="59" type="Herbarium">F</collectionCode>
|
|
</collectionCodeEnum>
|
|
950, and InaCC
|
|
<collectionCodeEnum box="[237,250,301,324]" pageId="11" pageNumber="59">
|
|
<collectionCode box="[237,250,301,324]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="11" pageNumber="59" type="Herbarium">F</collectionCode>
|
|
</collectionCodeEnum>
|
|
992 (FFSC), InaCC
|
|
<collectionCodeEnum box="[469,482,301,324]" pageId="11" pageNumber="59">
|
|
<collectionCode box="[469,482,301,324]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="11" pageNumber="59" type="Herbarium">F</collectionCode>
|
|
</collectionCodeEnum>
|
|
962 (FIESC), InaCC
|
|
<collectionCode box="[709,722,301,324]" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:15707" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="11" pageNumber="59" type="Herbarium">
|
|
<collectionCodeEnum box="[709,722,301,324]" pageId="11" pageNumber="59">F</collectionCodeEnum>
|
|
</collectionCode>
|
|
974 (FSSC). None of the isolates was able to cause any disease symptoms in the inoculated plants. All of the isolates tested caused only slight discoloration in the corm without any further disease development.
|
|
</paragraph>
|
|
<paragraph blockId="11.[113,763,477,566]" box="[113,232,477,500]" pageId="11" pageNumber="59">
|
|
<heading bold="true" box="[113,232,477,500]" fontSize="9" level="2" pageId="11" pageNumber="59" reason="0">
|
|
<emphasis bold="true" box="[113,232,477,500]" italics="true" pageId="11" pageNumber="59">Taxonomy</emphasis>
|
|
</heading>
|
|
</paragraph>
|
|
</subSubSection>
|
|
</treatment>
|
|
</document> |