206 lines
14 KiB
XML
206 lines
14 KiB
XML
<document ID-DOI="https://doi.org/10.3767/persoonia.2019.43.02" ID-GBIF-Dataset="7e041cd7-75f6-4285-a8b0-d4aa85967ca0" ID-PMC="PMC7085855" ID-PubMed="32214497" ID-Zenodo-Dep="3565708" checkinTime="1575644186748" checkinUser="plazi" docAuthor="Maryani, N., Sandoval-Denis, M., Lombard, L., Crous, P. W. & Kema, G. H. J." docDate="2019" docId="0391CB210B51866EFCDCFC9A0FB3931B" docLanguage="en" docName="persoonia_fusarium_on_banana_1552560214027.pdf" docOrigin="Persoonia 43" docStyle="DocumentStyle{}" docTitle="Fusarium fujikuroi" docType="treatment" docVersion="5" lastPageNumber="58" masterDocId="FFA8B3590B588664FFE4FFCA0D379126" masterDocTitle="New endemic Fusarium species hitch-hiking with pathogenic Fusarium strains causing Panama disease in small-holder banana plots in Indonesia" masterLastPageNumber="69" masterPageNumber="48" pageNumber="57" updateTime="1668138949826" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>New endemic Fusarium species hitch-hiking with pathogenic Fusarium strains causing Panama disease in small-holder banana plots in Indonesia</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Maryani, N.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Sandoval-Denis, M.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Lombard, L.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Crous, P. W.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Kema, G. H. J.</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>Persoonia</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2019</mods:date>
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<mods:detail type="pubDate">
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<mods:number>2019-03-14</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>43</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>48</mods:start>
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<mods:end>69</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">https://doi.org/10.3767/persoonia.2019.43.02</mods:identifier>
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<mods:identifier type="GBIF-Dataset">7e041cd7-75f6-4285-a8b0-d4aa85967ca0</mods:identifier>
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<mods:identifier type="PMC">PMC7085855</mods:identifier>
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<mods:identifier type="PubMed">32214497</mods:identifier>
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<mods:identifier type="Zenodo-Dep">3565708</mods:identifier>
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</mods:mods>
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<treatment ID-DOI="http://doi.org/10.5281/zenodo.5613541" ID-GBIF-Taxon="160671859" ID-Zenodo-Dep="5613541" LSID="urn:lsid:plazi:treatment:0391CB210B51866EFCDCFC9A0FB3931B" httpUri="http://treatment.plazi.org/id/0391CB210B51866EFCDCFC9A0FB3931B" lastPageId="10" lastPageNumber="58" pageId="9" pageNumber="57">
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<subSubSection box="[824,1444,847,871]" pageId="9" pageNumber="57" type="nomenclature">
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<paragraph blockId="9.[824,1474,847,1054]" box="[824,1444,847,871]" pageId="9" pageNumber="57">
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<heading bold="true" box="[824,1444,847,871]" fontSize="9" level="2" pageId="9" pageNumber="57" reason="0">
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<emphasis bold="true" box="[824,1444,847,871]" italics="true" pageId="9" pageNumber="57">
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<taxonomicName box="[824,1034,848,871]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="9" pageNumber="57" phylum="Ascomycota" rank="species" species="fujikuroi">
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<taxonomicName box="[824,932,848,871]" class="Dothideomycetes" family="Botryosphaeriaceae" genus="Fusarium" higherTaxonomySource="CoL" kingdom="Fungi" order="Botryosphaeriales" pageId="9" pageNumber="57" phylum="Ascomycota" rank="genus">Fusarium</taxonomicName>
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fujikuroi
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</taxonomicName>
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species complex (
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<potCollectionCode box="[1247,1308,847,870]" pageId="9" pageNumber="57">
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<collectionCode box="[1247,1308,847,870]" pageId="9" pageNumber="57">FFSC</collectionCode>
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</potCollectionCode>
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) phylogeny
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection lastPageId="10" lastPageNumber="58" pageId="9" pageNumber="57" type="discussion">
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<paragraph blockId="9.[824,1474,847,1054]" pageId="9" pageNumber="57">
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The eight isolates belonging to the
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<collectionCode box="[1182,1244,884,907]" pageId="9" pageNumber="57">
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<potCollectionCode box="[1182,1244,884,907]" pageId="9" pageNumber="57">FFSC</potCollectionCode>
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</collectionCode>
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were further analysed using a multi-gene phylogeny based on
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<emphasis box="[1236,1297,914,937]" italics="true" pageId="9" pageNumber="57">cmdA</emphasis>
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,
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<emphasis box="[1309,1356,914,937]" italics="true" pageId="9" pageNumber="57">rpb1</emphasis>
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,
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<emphasis box="[1368,1416,914,937]" italics="true" pageId="9" pageNumber="57">rpb2</emphasis>
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,
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<emphasis box="[1427,1467,914,937]" italics="true" pageId="9" pageNumber="57">tef1</emphasis>
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, and
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<emphasis box="[871,911,943,966]" italics="true" pageId="9" pageNumber="57">tub.</emphasis>
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The final alignment included 4 795 characters (
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<emphasis box="[1413,1474,943,966]" italics="true" pageId="9" pageNumber="57">cmdA</emphasis>
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545,
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<emphasis box="[875,922,973,996]" italics="true" pageId="9" pageNumber="57">rpb1</emphasis>
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1534,
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<emphasis box="[991,1039,973,996]" italics="true" pageId="9" pageNumber="57">rpb2</emphasis>
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1551,
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<emphasis box="[1108,1134,973,996]" italics="true" pageId="9" pageNumber="57">tef</emphasis>
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677 and
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<emphasis box="[1228,1261,973,996]" italics="true" pageId="9" pageNumber="57">tub</emphasis>
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488) including align- ment gaps, and encompassed 54 isolates, with two outgroup taxa (
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<taxonomicName box="[885,1029,1031,1054]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="9" pageNumber="57" phylum="Ascomycota" rank="species" species="oxysporum">
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<emphasis box="[885,1029,1031,1054]" italics="true" pageId="9" pageNumber="57">
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<collectionCodeEnum box="[885,900,1031,1054]" pageId="9" pageNumber="57">F</collectionCodeEnum>
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. oxysporum
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</emphasis>
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</taxonomicName>
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CBS 716.74 and CBS 744.97) (
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<tableCitation box="[1378,1463,1031,1054]" captionStart="Table 2" captionStartId="4.[111,161,488,510]" captionTargetBox="[111,2088,545,1846]" captionText="Table 2 Fusarium species included in this study." httpUri="http://table.plazi.org/id/DF472ABF0B5C8660FF8BFE220F1790DB" pageId="9" pageNumber="57" tableUuid="DF472ABF0B5C8660FF8BFE220F1790DB">Table 2</tableCitation>
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).
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</paragraph>
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<caption pageId="9" pageNumber="57">
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<paragraph pageId="9" pageNumber="57">
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<emphasis bold="true" box="[113,165,1128,1146]" pageId="9" pageNumber="57">Fig. 4</emphasis>
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Maximum likelihood tree inferred from the combined
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<emphasis box="[641,680,1128,1146]" italics="true" pageId="9" pageNumber="57">rpb1</emphasis>
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and
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<emphasis box="[724,764,1128,1146]" italics="true" pageId="9" pageNumber="57">rpb2</emphasis>
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sequence datasets of the
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<taxonomicName authorityName="Fuckel" authorityYear="1870" box="[340,540,1154,1172]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="9" pageNumber="57" phylum="Ascomycota" rank="species" species="sambucinum">
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<emphasis box="[340,540,1154,1172]" italics="true" pageId="9" pageNumber="57">Fusarium sambucinum</emphasis>
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</taxonomicName>
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species complex (FSSC) including one Indonesian isolate InaCC F974 (indicated in blue). Bootstrap support values and Bayesian posterior probabilities are given at each node. The tree is rooted to
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<taxonomicName box="[311,493,1230,1248]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="9" pageNumber="57" phylum="Ascomycota" rank="species" species="circinatum">
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<emphasis box="[311,493,1230,1248]" italics="true" pageId="9" pageNumber="57">Fusarium circinatum</emphasis>
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</taxonomicName>
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(NRRL 25331) and
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<taxonomicName class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="9" pageNumber="57" phylum="Ascomycota" rank="species" species="fujikuroi">
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<emphasis box="[681,764,1230,1248]" italics="true" pageId="9" pageNumber="57">Fusarium</emphasis>
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<emphasis box="[113,181,1256,1274]" italics="true" pageId="9" pageNumber="57">fujikuroi</emphasis>
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</taxonomicName>
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(NRRL 13566).
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</paragraph>
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</caption>
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<paragraph blockId="10.[113,765,176,573]" pageId="10" pageNumber="58">
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The analysis was consistently able to distinguish the three biogeographical clades known as the African,American and Asian clades sensu
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<bibRefCitation author="O'Donnell K & Cilgenik E & Nirenberg HI" box="[265,528,233,256]" journalOrPublisher="Mycologia" pageId="10" pageNumber="58" pagination="465 - 493" part="90" refId="ref16934" refString="O'Donnell K, Cilgenik E, Nirenberg HI. 1998 a. Molecular systematics and phylogeography of the Gibberella fujikuroi species complex. Mycologia 90: 465 - 493." title="Molecular systematics and phylogeography of the Gibberella fujikuroi species complex" type="journal article" year="1998">
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O’Donnell et al. (
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<date box="[448,508,233,256]" pageId="10" pageNumber="58" value="1998">1998</date>
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a)
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</bibRefCitation>
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. All of the Indonesian isolates clustered within the Asian clade of
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<collectionCode box="[584,647,262,285]" pageId="10" pageNumber="58">
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<potCollectionCode box="[584,647,262,285]" pageId="10" pageNumber="58">FFSC</potCollectionCode>
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</collectionCode>
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except for isolate InaCC
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<collectionCode box="[260,275,291,314]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
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991, identified as
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<taxonomicName box="[457,610,291,314]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="verticilloides">
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<emphasis box="[457,610,291,314]" italics="true" pageId="10" pageNumber="58">F. verticilloides</emphasis>
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</taxonomicName>
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, and clustered within the African clade (
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<figureCitation box="[380,447,320,343]" captionStart="Fig" captionStartId="3.[113,145,1953,1971]" captionTargetBox="[164,1437,174,1939]" captionTargetId="graphics@3.[164,1437,174,1880]" captionText="Fig. 2 Maximum likelihood tree inferred from the combined cmdA, tef1, tub, rpb1, and rpb2 sequence datasets of the Fusarium fujikuroi species complex (FFSC) including eight Indonesian isolates (indicated in blue). Bootstrap support values and Bayesian posterior probabilities are given at each node. The tree is rooted to Fusarium nirenbergiae (CBS 744.97) and F. oxysporum (CBS 716.74)." figureDoi="http://doi.org/10.5281/zenodo.3565712" httpUri="https://zenodo.org/record/3565712/files/figure.png" pageId="10" pageNumber="58">Fig. 2</figureCitation>
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). According to the multi-gene analysis, two isolates (InaCC
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<collectionCodeEnum box="[444,457,348,371]" pageId="10" pageNumber="58">
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<collectionCode box="[444,457,348,371]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
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</collectionCodeEnum>
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962 and InaCC
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<collectionCodeEnum box="[638,651,348,371]" pageId="10" pageNumber="58">
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<collectionCode box="[638,651,348,371]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
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</collectionCodeEnum>
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992) were identified as
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<taxonomicName box="[250,402,377,400]" class="Gastropoda" family="Ficidae" genus="Ficus" kingdom="Animalia" order="Littorinimorpha" pageId="10" pageNumber="58" phylum="Mollusca" rank="species" species="proliferatum">
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<emphasis box="[250,402,377,400]" italics="true" pageId="10" pageNumber="58">
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<collectionCodeEnum box="[250,265,377,400]" pageId="10" pageNumber="58">F</collectionCodeEnum>
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. proliferatum
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</emphasis>
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</taxonomicName>
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, while two new phylogenetic species were recognised among the Indonesian isolates. Isolates InaCC
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<collectionCodeEnum box="[192,205,435,458]" pageId="10" pageNumber="58">
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<collectionCode box="[192,205,435,458]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
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</collectionCodeEnum>
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872 and InaCC
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<collectionCodeEnum box="[385,399,435,458]" pageId="10" pageNumber="58">
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<collectionCode box="[385,399,435,458]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
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</collectionCodeEnum>
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993, from central and
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<collectingRegion box="[648,761,435,458]" country="Indonesia" name="Jawa Timur" pageId="10" pageNumber="58">East Java</collectingRegion>
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, respectively, clustered in a distinct, highly supported clade (96 bs/0.99 pp) closely related to
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<taxonomicName box="[441,588,492,515]" class="Gastropoda" family="Ficidae" genus="Ficus" kingdom="Animalia" order="Littorinimorpha" pageId="10" pageNumber="58" phylum="Mollusca" rank="species" species="mangiferae">
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<emphasis box="[441,588,492,515]" italics="true" pageId="10" pageNumber="58">
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<collectionCodeEnum box="[441,456,492,515]" pageId="10" pageNumber="58">F</collectionCodeEnum>
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. mangiferae
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</emphasis>
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</taxonomicName>
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. Isolates InaCC
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<collectionCodeEnum box="[113,127,521,544]" pageId="10" pageNumber="58">
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<collectionCode box="[113,127,521,544]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
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</collectionCodeEnum>
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950–152, formed a distinct group (100 bs/1.0 pp), closely related to, but genetically distinct from
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<taxonomicName baseAuthorityName="Leslie & Summerell" baseAuthorityYear="2006" box="[523,637,550,573]" class="Gastropoda" family="Ficidae" genus="Ficus" kingdom="Animalia" order="Littorinimorpha" pageId="10" pageNumber="58" phylum="Mollusca" rank="species" species="sacchari">
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<emphasis box="[523,637,550,573]" italics="true" pageId="10" pageNumber="58">
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<collectionCodeEnum box="[523,538,550,573]" pageId="10" pageNumber="58">F</collectionCodeEnum>
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. sacchari
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</emphasis>
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</taxonomicName>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |