235 lines
20 KiB
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235 lines
20 KiB
XML
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<mods:title id="517485140B1E46C0675F788AB9E794FA">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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<mods:namePart id="33E6916EE29421D7073A4BCC01965FD1">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="1CC2504845A2E6AC8E10C65FCDE29B6C">Salvetti, Elisa</mods:namePart>
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<mods:namePart id="C6A2A0618A7E4060DAD19AC586815FA5">O’Toole, Paul W.</mods:namePart>
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<mods:namePart id="D800FF0F151F917C68D6B6392CD4D63E">Watanabe, Koichi</mods:namePart>
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<mods:namePart id="3F5DC0F116C7892D58C4CC5FEE2D03C8">Wuyts, Sander</mods:namePart>
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<mods:namePart id="CDA3B38130D44049A1F3C63503D24CBB">Felis, Giovanna E.</mods:namePart>
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<mods:namePart id="72DA41BB6170187DF02884400450176F">Gänzle, Michael G.</mods:namePart>
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<mods:namePart id="4D73AC76390F531F9224C4A79EFE8E4B">Lebeer, Sarah</mods:namePart>
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<mods:title id="85C74CC2F6CACC1A4B41F12DEB75DF50">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="0A390F65A1EFBB200A6271A6BB2021CA">
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<mods:date id="AE2D5EECE889FE8827FED257AA898BA0">2020</mods:date>
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<mods:number id="129A0B4135AF71D59E1A722D59F908A5">2020-04-01</mods:number>
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<mods:number id="573F15AB8FD7947F2A817710B524A879">70</mods:number>
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<treatment id="0389878AFF92216EDA0BFF2EFAA3608B" ID-DOI="http://doi.org/10.5281/zenodo.6309722" ID-Zenodo-Dep="6309722" LSID="urn:lsid:plazi:treatment:0389878AFF92216EDA0BFF2EFAA3608B" httpUri="http://treatment.plazi.org/id/0389878AFF92216EDA0BFF2EFAA3608B" lastPageNumber="2813" pageId="31" pageNumber="2813">
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<paragraph id="8B9F369CFF92216EDA0BFF2EFA30629D" blockId="31.[826,1473,184,749]" pageId="31" pageNumber="2813">
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<heading id="D0D781F0FF92216EDA0BFF2EFA30629D" allCaps="true" bold="true" fontSize="12" level="2" pageId="31" pageNumber="2813" reason="3">
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<emphasis id="B954EA8EFF92216EDA0BFF2EFA30629D" bold="true" pageId="31" pageNumber="2813">
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DESCRIPTION OF
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<taxonomicName id="4C204D1FFF92216EDD02FF2EFB5D629D" authority="SUBSP. PARACASEI" authorityName="SUBSP. PARACASEI" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Lacticaseibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="paracasei" status="comb. nov.">
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<emphasis id="B954EA8EFF92216EDD02FF2EFC73629D" bold="true" italics="true" pageId="31" pageNumber="2813">LACTICASEIBACILLUS PARACASEI</emphasis>
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SUBSP.
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<emphasis id="B954EA8EFF92216EDD65FF4BFB5D629D" bold="true" box="[1106,1266,221,250]" italics="true" pageId="31" pageNumber="2813">PARACASEI</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A26757F5FF92216EDDCDFF4BFA30629D" box="[1274,1439,221,250]" pageId="31" pageNumber="2813" rank="species">COMB. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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<subSubSection id="C33A6517FF92216EDA0BFE91FA92633A" pageId="31" pageNumber="2813" type="etymology">
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<paragraph id="8B9F369CFF92216EDA0BFE91FA92633A" blockId="31.[826,1473,184,749]" pageId="31" pageNumber="2813">
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<taxonomicName id="4C204D1FFF92216EDA0BFE91FAA66378" authority="subsp. paracasei" box="[828,1289,263,287]" class="Bacilli" family="Lactobacillaceae" genus="Lacticaseibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="subSpecies" species="paracasei" subSpecies="paracasei">
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<emphasis id="B954EA8EFF92216EDA0BFE91FBF66378" box="[828,1113,263,287]" italics="true" pageId="31" pageNumber="2813">Lacticaseibacillus paracasei</emphasis>
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subsp.
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<emphasis id="B954EA8EFF92216EDD90FE9EFAA66378" box="[1191,1289,264,287]" italics="true" pageId="31" pageNumber="2813">paracasei</emphasis>
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</taxonomicName>
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(pa.ra.ca’se.i. Gr. prep.
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<emphasis id="B954EA8EFF92216EDA41FEB1FC0A6359" box="[886,933,295,318]" italics="true" pageId="31" pageNumber="2813">para</emphasis>
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resembling; N.L. gen. n.
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<taxonomicName id="4C204D1FFF92216EDD93FEB1FB7A6359" authorityName="Hansen & Lessel" authorityYear="1971" baseAuthorityName="Orla-Jensen" baseAuthorityYear="1916" box="[1188,1237,295,318]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="casei">
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<emphasis id="B954EA8EFF92216EDD93FEB1FB7A6359" box="[1188,1237,295,318]" italics="true" pageId="31" pageNumber="2813">casei</emphasis>
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</taxonomicName>
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a species epithet; N.L. gen. n.
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<taxonomicName id="4C204D1FFF92216EDABFFED3FC45633B" authorityName="SUBSP. PARACASEI" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[904,1002,325,348]" class="Bacilli" family="Lactobacillaceae" genus="Lacticaseibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="paracasei">
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<emphasis id="B954EA8EFF92216EDABFFED3FC45633B" box="[904,1002,325,348]" italics="true" pageId="31" pageNumber="2813">paracasei</emphasis>
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</taxonomicName>
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resembling
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<taxonomicName id="4C204D1FFF92216EDD5BFED3FA82633B" authorityName="Hansen & Lessel" authorityYear="1971" baseAuthorityName="Orla-Jensen" baseAuthorityYear="1916" box="[1132,1325,325,349]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="casei">
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<emphasis id="B954EA8EFF92216EDD5BFED3FA82633B" box="[1132,1325,325,349]" italics="true" pageId="31" pageNumber="2813">Lactobacillus casei</emphasis>
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</taxonomicName>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FF92216EDA0BFEE5FC4A6024" pageId="31" pageNumber="2813" type="description">
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<paragraph id="8B9F369CFF92216EDA0BFEE5FC7A63F9" blockId="31.[826,1473,184,749]" pageId="31" pageNumber="2813">
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Basonym
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<taxonomicName id="4C204D1FFF92216EDA91FEE5FC3F63CD" authority="subsp. paracasei Collins et al. 1989" authorityName="Collins" authorityYear="1989" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="subSpecies" species="paracasei" subSpecies="paracasei">
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<emphasis id="B954EA8EFF92216EDA91FEE5FB3663ED" box="[934,1177,371,395]" italics="true" pageId="31" pageNumber="2813">Lactobacillus paracasei</emphasis>
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subsp.
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<emphasis id="B954EA8EFF92216EDDDDFEE5FAE363ED" box="[1258,1356,371,394]" italics="true" pageId="31" pageNumber="2813">paracasei</emphasis>
|
||
Collins
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<emphasis id="B954EA8EFF92216EDC9FFEE2FCE063CD" italics="true" pageId="31" pageNumber="2813">et al</emphasis>
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||
. 1989
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</taxonomicName>
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, 107
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<superScript id="7C559BD4FF92216EDAF6FE06FC7A63F9" attach="left" box="[961,981,400,414]" fontSize="6" pageId="31" pageNumber="2813">VP</superScript>
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</paragraph>
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<paragraph id="8B9F369CFF92216EDA0BFE56FBDD6391" blockId="31.[826,1473,184,749]" pageId="31" pageNumber="2813">
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The genome size of the
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<typeStatus id="549B883EFF92216EDD76FE56FBC063BF" box="[1089,1135,448,472]" pageId="31" pageNumber="2813">type</typeStatus>
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||
strain is 2.88 Mbp. The mol% G+C content of DNA is 46.5.
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</paragraph>
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<paragraph id="8B9F369CFF92216EDA0BFD9AFC4A6024" blockId="31.[826,1473,184,749]" pageId="31" pageNumber="2813">Isolated from dairy products, sewage, silage, humans and clinical sources.</paragraph>
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</subSubSection>
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strain is
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<specimenCode id="DB869EE7FF92216EDD37FDCCFBDB6016" box="[1024,1140,601,626]" collectionCode="DSM" country="Germany" httpUri="http://grbio.org/cool/4644-42cg" name="Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH" pageId="31" pageNumber="2813">DSM 5622</specimenCode>
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</superScript>
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=
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<specimenCode id="DB869EE7FF92216EDDBCFDCCFAB56016" box="[1163,1306,601,626]" collectionCode="ATCC" country="USA" httpUri="http://grbio.org/cool/b0k1-wg01" name="American Type Culture Collection" pageId="31" pageNumber="2813">ATCC 25302</specimenCode>
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<collectionCode id="ED31AE59FF92216EDC2DFDCEFA8B6001" box="[1306,1316,600,614]" name="Tavera, Department of Geology and Geophysics" pageId="31" pageNumber="2813">T</collectionCode>
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</superScript>
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</materialsCitation>
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||
=
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||
<materialsCitation id="3B483CC1FF92216EDC05FDCCFBE860E2" accessionNumber="LMG 13087" collectionCode="T, LMG" country="American Samoa" location="AS" pageId="31" pageNumber="2813" specimenCode="JCM 8130" specimenCount="1">
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||
<collectingCountry id="F337760CFF92216EDC05FDCCFAFC6015" box="[1330,1363,602,626]" name="American Samoa" pageId="31" pageNumber="2813">AS</collectingCountry>
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1.2826
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<collectionCode id="ED31AE59FF92216EDC96FDCEFA046001" box="[1441,1451,600,614]" name="Tavera, Department of Geology and Geophysics" pageId="31" pageNumber="2813">T</collectionCode>
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</superScript>
|
||
=
|
||
<specimenCode id="DB869EE7FF92216EDA0BFDEEFC0860F7" box="[828,935,632,656]" collectionCode="JCM" country="Japan" httpUri="http://grbio.org/cool/iyky-md37" name="Japan Collection of Microorganisms" pageId="31" pageNumber="2813">JCM 8130</specimenCode>
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<superScript id="7C559BD4FF92216EDA90FDE1FC1E60E2" attach="none" box="[935,945,631,645]" fontSize="6" pageId="31" pageNumber="2813">
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<collectionCode id="ED31AE59FF92216EDA90FDE1FC1E60E2" box="[935,945,631,645]" name="Tavera, Department of Geology and Geophysics" pageId="31" pageNumber="2813">T</collectionCode>
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</superScript>
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=
|
||
<collectionCode id="ED31AE59FF92216EDA89FDEEFC5660F7" box="[958,1017,632,656]" country="Belgium" httpUri="http://grbio.org/cool/0fkg-rcci" name="Belgian Coordinated Collections of Microorganisms/ LMG Bacteria Collection" pageId="31" pageNumber="2813">LMG</collectionCode>
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||
13087
|
||
<superScript id="7C559BD4FF92216EDD08FDE1FBE860E2" attach="none" box="[1087,1095,631,645]" fontSize="6" pageId="31" pageNumber="2813">
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<collectionCode id="ED31AE59FF92216EDD08FDE1FBE860E2" box="[1087,1095,631,645]" name="Tavera, Department of Geology and Geophysics" pageId="31" pageNumber="2813">T</collectionCode>
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</superScript>
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</materialsCitation>
|
||
.
|
||
</paragraph>
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||
</subSubSection>
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||
<subSubSection id="C33A6517FF92216EDA0BFD30FA2760D9" box="[828,1416,678,702]" pageId="31" pageNumber="2813" type="description">
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<paragraph id="8B9F369CFF92216EDA0BFD30FA2760D9" blockId="31.[826,1473,184,749]" box="[828,1416,678,702]" pageId="31" pageNumber="2813">Genome sequence accession number: AZGH00000000.</paragraph>
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</subSubSection>
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||
<subSubSection id="C33A6517FF92216EDA0BFD42FAA3608B" box="[828,1292,724,749]" pageId="31" pageNumber="2813" type="materials_examined">
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<paragraph id="8B9F369CFF92216EDA0BFD42FAA3608B" blockId="31.[826,1473,184,749]" box="[828,1292,724,749]" pageId="31" pageNumber="2813">
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||
16S rRNA gene accession number:
|
||
<accessionNumber id="9473AB7FFF92216EDD86FD42FAA8608B" box="[1201,1287,724,748]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/D79212" pageId="31" pageNumber="2813">D79212</accessionNumber>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |