A novel filamentous cyanobacterium Microseira minor sp. nov. (Oscillatoriaceae, Cyanobacteria) from the Ganfu Channel, Jiangxi, China
Author
Geng, Ruozhen
0000-0002-2154-386X
Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China & College of Life and Environmental Sciences, Wenzhou University, Wenzhou, Zhejiang 325039, China & 20210438 @ wzu. edu. cn; https: // orcid. org / 0000 - 0002 - 2154 - 386 X
20210438@wzu.edu.cn
Author
Wen, Qianzhi
0000-0002-9830-8673
Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China & University of Chinese Academy of Sciences, Beijing 100039, China & wenqz @ ihb. ac. cn; https: // orcid. org / 0000 - 0002 - 9830 - 8673
wenqz@ihb.ac.cn
Author
Wang, Yilang
0000-0003-1295-4808
Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China & University of Chinese Academy of Sciences, Beijing 100039, China & chunri 2012 @ outlook. com; https: // orcid. org / 0000 - 0003 - 1295 - 4808
chunri2012@outlook.com
Author
Yang, Ping
0000-0001-6775-0859
Jiangxi Province Institute of Water Sciences, Nanchang 330029, China & yangping 200618 @ 163. com; https: // orcid. org / 0000 - 0001 - 6775 - 0859
Author
Dai, Guofei
0000-0002-5021-5398
Jiangxi Province Institute of Water Sciences, Nanchang 330029, China & daiguofei @ whu. edu. cn; https: // orcid. org / 0000 - 0002 - 5021 - 5398
daiguofei@whu.edu.cn
Author
Li, Renhui
0000-0003-2822-6792
Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China & College of Life and Environmental Sciences, Wenzhou University, Wenzhou, Zhejiang 325039, China & renhui. li @ wzu. edu. cn; https: // orcid. org / 0000 - 0003 - 2822 - 6792
renhui.li@wzu.edu.cn
Author
Yu, Gongliang
0000-0002-0309-8117
Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China & yugl @ ihb. ac. cn; https: // orcid. org / 0000 - 0002 - 0309 - 8117
yugl@ihb.ac.cn
text
Phytotaxa
2021
2021-11-05
524
3
178
190
journal article
3624
10.11646/phytotaxa.524.3.2
b8ff132c-0c49-4bc3-8e80-55d7235036b2
1179-3163
5649286
Microseira minor
Geng et Yu
sp. nov.
(
Fig. 1
)
Diagnosis:
—This species is morphologically similar to the genus
Microseira
but differs from
M. wollei
in the lack of false branching, much narrower filaments and trichomes, smaller ratio of cell length and width under the light microscopy. The phylogenetic analysis based on 16S rRNA gene, partial 16S-23S rRNA operon and
nifH
gene showed that this species was formed a well-supported clade, closest to other
Microseira
species
, far away from other close genera. In addition, the non-producing of neurotoxins and hepatotoxins is also a major difference.
Description:
—Filaments unbranched, long, 13.73–(16.04)–18.58 μm broad, forming densely aggregations, blueblack, brown-black, yellowed when old, straight or slightly flexuous. Trichomes cylindrical, isopolar, not attenuated to the ends, not or slightly constricted at the cross-walls. Cells discoid, 3.12–(5.03)–7.70 μm long, 9.02–(11.05)–13.33 μm broad, 2–3 × broader than long, with granular content, not aerotopes. Apical cells rounded, without calyptra or thickened outer cell wall. Sheath usually present, colorless, hyaline, firm, lamellated when old, and open at the apex. Reproduction by motile hormogonia formed by help of necridia. Thylakoids irregularly arranged.
Etymology:
—The name of species
“
minor
” was chosen because of its small and thin discoid cells.
Type locality:
—
In
the
Ganfu Channel
,
Jiangxi Province
,
China
. (
August 2019
, site one
28°11’8.2” N
,
116°10’2.56” E
and
October 2019
,
site two
28°14’7.70” N
,
116°6’38.21” E
)
.
Holotype
here designated:
—Dry material of strain
CHAB 4136
was stored at the Freshwater Algae Biology Herbarium (
HBI
),
Institute of Hydrobiology
,
Chinese Academy of Science
,
Wuhan
,
Hubei Province
,
China
, as specimen No.
JXGF201901
.
Reference strain:
—
CHAB
4136 and
CHAB
4163 (the additional strain) were deposited at the
CHAB
, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan,
Hubei Province
,
China
.
Habitat:
—Rock surface in freshwater rivers and channels in subtropical region.
Molecular and phylogeny analyses:
—The 16S rRNA gene sequences of
Microseira minor
strains
CHAB
4136 and
CHAB
4163 obtained in this study shared 98.90%–99.92% similarities among all six clones by calculating p-distance with pairwise deletion of gaps using
MEGA
software v7.0. These clones shared 95.00%–96.01% with other
Microseira
species
, less than 97% which was regarded as the cutoff for bacterial species delimitation. These clones had a maximum similarity of 16S rRNA gene sequences as 95.50% with their closest filamentous genera (sharing similarities to
Potamosiphon
,
Aerosakkonema
,
Phormidium
,
Potamolinea
and
Oscillatoria
as 93.98%–95.50%, 92.78%–92.95%, 92.28%–92.44%, 92.11%–92.44% and 91.92%–92.60%, respectively) (
Table 1
). The 16S rRNA gene phylogenetic trees based on
ML
and BI methods showed that the six clones of
Microseira minor
clustered a unique clade (cluster A) together with other
Microseira
species
(
Fig. 3
and
Fig. 4
), supported by
ML
and BI calculations with high bootstrap values of 100% and 1.000.
Fig. 1.
Light microscopy of
Microseira minor
strains.A–C. Immature filaments with colourless sheaths (Arrow indicates sheath). D–G. Trichome fragmentation and formation of necridia (Arrows indicate fragmentation of trichomes and formation of necridias). H–I. Old filaments with lamellated sheaths (Arrows indicate lamellated sheaths). Scale bars: 20 μm.
In the
nifH
phylogeny (
Fig. 5
and
Fig. 6
), the eight clones obtained from the two strains of
Microseira minor
in this study formed a well-supported freshwater clade together with all environmental clones of
Microseira wollei
(cluster M, cluster N and cluster L). The
nifH
gene sequences of
CHAB
4136 (cluster S1) and
CHAB
4163 (cluster S2) divided into two distinct sub-groups with cluster M and cluster N, and sequence similarities were 94.28%–95.96% and 96.97%–98.32%, respectively (
Table 2
). The whole clade formed by
Microseira
clones including the two strains of
Microseira minor
were supported by
ML
and BI methods with high bootstrap values of 85% and 0.90, supporting the two strains as a new species
Microseira minor
within the genus
Microseira
.
Genes associated with
four types
of toxins of microcystins, cylindrospermopsin, paralytic shellfish toxins and anatoxin were not detected in any of these
Microseira minor
strains.
TABLE 1.
Sequence similarity comparison of the 16S rRNA gene between
Microseira minor
strains and its closed species and genera. Similarity= [1-(p-distance)]*100.
Strains
|
1
|
2
|
3
|
4
|
5
|
6
|
7
|
8
|
9
|
10
|
11
|
12
|
13
|
14
|
15
|
16
|
17
|
18
|
19
|
20
|
1.
Microseira minor
CHAB
|
4136-4
|
2.
Microseira minor
CHAB
|
99.83 |
4136-5
|
3.
Microseira minor
CHAB
|
99.92 |
99.92 |
4136-6
|
4.
Microseira minor
CHAB
|
98.90 |
98.90 |
98.98 |
4163-5
|
5.
Microseira minor
CHAB
|
99.07 |
99.07 |
99.15 |
99.83 |
4163-6
|
6.
Microseira minor
CHAB
|
98.98 |
98.98 |
99.07 |
99.75 |
99.92 |
4163-7
|
7.
Microseira wollei
NIES-
|
95.42 |
95.50 |
95.50 |
95.08 |
95.08 |
95.00 |
4236 |
8.
Microseira wollei
AW2009
|
95.76 |
95.84 |
95.84 |
95.25 |
95.25 |
95.17 |
98.64 |
clone B19 |
9.
Microseira wollei
YC
0404
|
95.93 |
96.01 |
96.01 |
95.42 |
95.42 |
95.34 |
98.81 |
99.49 |
clone E43 |
10.
Microseira wollei
YC1109
|
95.84 |
95.93 |
95.93 |
95.42 |
95.42 |
95.34 |
98.56 |
99.41 |
99.58 |
clone A45 |
11.
Microseira wollei
AW2009
|
95.93 |
96.01 |
96.01 |
95.42 |
95.42 |
95.34 |
98.81 |
99.83 |
99.66 |
99.58 |
clone B37 |
12.
Microseira wollei
AW2009
|
95.93 |
96.01 |
96.01 |
95.42 |
95.42 |
95.34 |
98.81 |
99.83 |
99.66 |
99.58 |
100.00 |
clone B35 |
13.
Microseira wollei
YC2010
|
95.67 |
95.76 |
95.76 |
95.25 |
95.25 |
95.17 |
98.47 |
99.15 |
99.66 |
99.58 |
99.32 |
99.32 |
clone B9 |
14.
Microseira wollei
str.
|
94.83 |
94.91 |
94.91 |
95.59 |
95.59 |
95.50 |
97.63 |
97.12 |
97.63 |
97.29 |
97.29 |
97.29 |
97.37 |
Carmichael/Alabama |
15.
Potamosiphon austaliensis
|
93.98 |
94.06 |
94.06 |
94.23 |
94.40 |
94.32 |
93.64 |
93.30 |
93.81 |
93.47 |
93.47 |
93.47 |
93.72 |
93.98 |
FHC0914.01 |
16.
Potamosiphon austaliensis
|
95.08 |
95.17 |
95.17 |
95.34 |
95.50 |
95.42 |
94.40 |
94.23 |
94.74 |
94.40 |
94.40 |
94.40 |
94.57 |
95.00 |
98.56 |
FHC0914.02 |
17.
Potamosiphon austaliensis
|
94.15 |
94.23 |
94.23 |
94.40 |
94.57 |
94.49 |
93.81 |
93.47 |
93.98 |
93.64 |
93.64 |
93.64 |
93.89 |
94.15 |
99.66 |
98.73 |
FHC0914.03 |
18.
Phormidium uncinatum
|
92.28 |
92.36 |
92.36 |
92.28 |
92.44 |
92.36 |
92.02 |
91.85 |
92.36 |
92.02 |
92.02 |
92.02 |
92.19 |
92.78 |
93.63 |
94.40 |
93.80 |
SAG 81.79 |
19.
Oscillatoria princeps
|
92.52 |
92.52 |
92.60 |
92.01 |
92.01 |
91.92 |
91.92 |
92.01 |
92.26 |
92.09 |
92.18 |
92.18 |
92.01 |
91.58 |
90.82 |
91.67 |
90.99 |
91.49 |
CCALA 1115 clone K1 |
20.
Aerosakkonema funiforme
|
92.78 |
92.87 |
92.87 |
92.95 |
92.95 |
92.87 |
92.61 |
93.04 |
93.38 |
93.21 |
93.21 |
93.21 |
93.21 |
93.29 |
92.62 |
93.80 |
92.79 |
92.61 |
91.76 |
Lao26 |
21.
Potamolinea magna
47PC
|
92.36 |
92.44 |
92.44 |
92.19 |
92.19 |
92.11 |
92.28 |
92.28 |
92.53 |
92.28 |
92.44 |
92.44 |
92.28 |
92.78 |
91.26 |
92.19 |
91.43 |
91.25 |
91.16 |
92.11 |
Analyses of ITS between 16S and 23S rRNA gene:
—The ITS sequences of the six clones from the two strains of
Microseira minor
, shared 96.05-96.26% similarities with each other, and contained both tRNA
Ile
and tRNA
Ala
, ranging from 485 to 499 bp.