Morphological and molecular characteristics of Geocenamus longus and the first report of G. brevidens from a karst cave (Nematoda: Merliniidae Siddiqi, 1971)
Author
Rybarczyk-Mydłowska, Katarzyna
0000-0001-6180-0392
katarzynar @ miiz. waw. pl; https: // orcid. org / 0000 - 0001 - 6180 - 0392
katarzynar@miiz.waw.pl
Author
Sikora, Grzegorz
0000-0002-4693-3848
gsikora @ miiz. waw. pl; https: // orcid. org / 0000 - 0002 - 4693 - 3848
gsikora@miiz.waw.pl
Author
Kubicz, Magdalena
0000-0002-9098-3797
mkubicz @ miiz. waw. pl; https: // orcid. org / 0000 - 0002 - 9098 - 3797
mkubicz@miiz.waw.pl
text
Zootaxa
2022
2022-05-11
5134
3
383
398
journal article
55573
10.11646/zootaxa.5134.3.3
0b65e67e-8475-4faf-9a56-b8011648963b
1175-5326
6538167
1BB4C248-772C-4A84-9161-2740E884F060
Identification of
Geocenamus brevidens
(
Allen, 1955
)
in the Piekło pod Skibami Cave
After the extraction from the sediment obtained from the Piekło pod Skibami Cave, and subsequent preparation of the permanent slides and microscopic observations, the nematodes were identified as representatives of
Geocenamus brevidens
(
Allen, 1955
)
by use of the morphological keys (
Brzeski, 1998
and
Geraert, 2011
). The morphology and morphometry (
Fig. 3
and
Tab. 4
) of this population were in agreement with the literature as well as with the most recent publications about this species (
Bharti
et al
., 2020
;
Munawar
et al
., 2021
; at most to
Shokoohi
et al
., 2022
). The herein reported
G. brevidens
population was for the first time localized in a cave and consisted mostly of females (9 of them were analyzed morphologically and morphometrically) and
two male
specimens.
Due to a quite difficult origin (cave sediment mixed with plant roots) and the possible presence of some PCR inhibiting substances within the sampled material, of the eight
G. brevidens
individuals, all genes were sequenced from a single specimen. Multiple 18S and 28S rDNA (
OM618609
and
OM618607
) sequences were obtained from the same DNA whereas mtCOI sequencing failed several times, therefore, only a single mtCOI sequence was obtained in the present study (
OM615894
). Since various attempts were made to obtain mtCOI sequence, we recommend verification and confirmation of this genetic marker in future studies. Additionally, from each of the other seven nematodes at least one part of the 18S rDNA fragment was acquired. Neither 28S rDNA nor mtCOI additional data was gained from those nematodes. There was no intraspecific variability observed within the independently obtained 18S rDNA sequences except two indels (1 and 2 nucleotide) within one 18S-II sequence (
OM618610
). The obtained full length 18S rDNA sequence (nearly 1,7 kb) showed the highest percent identity (99,88%; 1 nt difference) with the
Merlinius brevidens
(
KX789708
) sequence from
Iran
. Both sequences were of similar length. The 28S rDNA (1 kb)
G. brevidens
from this study showed the highest percent identity to the
G. brevidens
(
MW029449
) sequence from
Canada
(100% identity, 71% query coverage), a population which was suggested as the reference population for this species (
Munawar
et al
., 2021
).