A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae
Author
Zheng, Jinshui
Author
Wittouck, Stijn
Author
Salvetti, Elisa
Author
Franz, Charles M. A. P.
Author
Harris, Hugh M. B.
Author
Mattarelli, Paola
Author
O’Toole, Paul W.
Author
Pot, Bruno
Author
Vandamme, Peter
Author
Walter, Jens
Author
Watanabe, Koichi
Author
Wuyts, Sander
Author
Felis, Giovanna E.
Author
Gänzle, Michael G.
Author
Lebeer, Sarah
text
International Journal of Systematic and Evolutionary Microbiology
2020
2020-04-01
70
4
2782
2858
http://dx.doi.org/10.1099/ijsem.0.004107
journal article
10.1099/ijsem.0.004107
1466-5034
10114954
Emended description of
Lactobacillus
Lactobacillus
species are Gram-positive, homofermentative, thermophilic and non-spore-forming rods. Most
Lactobacillus
species do not ferment pentoses and none of the organisms encode genes for the pentose–phosphate pathway or pyruvate formate lyase. The emended description of the genus includes all organisms that were previously assigned to the
L. delbrueckii
group [
17
].
Lactobacillus
species are host-adapted; the
Lactobacillus melliventris
clade (previously termed the Firm-5 clade) is adapted to social bees [
52
] while all other
Lactobacillus
species
are adapted to vertebrate hosts.
Lactobacillus
species
ferment a relatively broad spectrum of carbohydrates and have the strain-specific ability to ferment extracellular fructans, starch, or glycogen [
53
,
54
]. The
L. melliventris
clade species also ferment a wider range of carbohydrates when compared to insect-adapted species in the genera
Apilactobacillus
and
Bombilactobacillus
. In intestinal habitats,
Lactobacillus
species
are generally associated with heterofermentative lactobacilli. For specific examples, it was shown that co-habitation of
Lactobacillus
species
with heterofermentative lactobacilli is based on long-term evolutionary relationships in biofilms [
55
] and a complementary preference for carbon sources [
18
,
56
]. Many
Lactobacillus
species
are able to ferment mannitol, which also reflects co-habitation with heterofermenters. The metabolic focus of
L. delbrueckii
on lactose [
57
] explains its dominance in yoghurt and cheese fermentations but also relates to its presence in the intestine of suckling piglets [
54
]. The genus
Lactobacillus
remains a relatively heterogenous genus with
L. iners
as the most distant member.
L. iners
has the smallest genome size among all
Lactobacillaceae
, which reflects its strict adaptation to the human vagina.
In addition to their relevance in intestinal and vaginal ecosystems,
Lactobacillus
species
frequently occur in dairy and cereal fermentations and are widely used as starter cultures for production of fermented dairy products [
58
,
59
].
A phylogenetic tree of all species in the genus
Lactobacillus
is provided in
Fig. S6A
.
The
type
species of the genus
Lactobacillus
is
L. delbrueckii
. Although the nomenclature of species in the emended genus
Lactobacillus
remains unchanged, a list of species and a list of their properties is provided below.