Morphogeometric and genetic variations among North African populations of the Mediterranean killifish Aphanius fasciatus (Valenciennes, 1821) from different habitats
Author
Labbaci, Abdelkader
Author
Chaoui, Lamya
Author
Bahri-Sfar, Lilia
Author
Hammami, Ibtissem
Author
Kara, M. Hichem
text
Cybium
2021
45
3
225
238
http://dx.doi.org/10.26028/cybium/2021-453-007
journal article
10.26028/cybium/2021-453-007
2101-0315
10493673
RESULTS
Morphological analysis
Canonical variate analysis (CVA) shows that differences exist between females and males morphology of
A. fasciatus
(
Fig. 3A
). These differences are displayed along the second axis, which explains 30.39% of global variance. Specimen shape of Ayata Lake is discriminated from those of the three other localities along the first axis, which represents 45.73% of global variance (
Fig. 3A
). The variation highlighted along axis 1 is related to landmarks 3, 9, 11, 12 and 14 and 3, 4, 8, 10, 12, 13 for axis 2. For a better appreciation of the shape differences, we expose transformation grids based on procrustes coordinates covariance matrix (
Fig. 3B
). Because of the overlapping of Mellah lagoon, Mellah Marsh and
Bizerte
lagoon specimens, we used discriminate function to obtain a shape pair comparisons female/male. Transformation grids that discriminate sexes within populations were also described (Appendix 1). Based on transformations grids, Ayata Lake fish have a shorter head length than the other populations and the end of the mouth position litters higher (see points 2 and
14 in
figure 3B). The base of opercule seems to be larger for Ayata Lake specimens. We noted variations between sexes in point 9, which corresponds to the insertion of the anal fin (smaller base in Ayata Lake) and more distant from pelvic fin in Ayata Lake. We see a difference between males and females along axis 2 (Cv2) in points 3, 4, 5, 7, 8 and 9. (
Fig. 3B
). Males are a bit wider than females, from the anal part to the caudal part of the body.
Genetic analysis
The seven-enzymatic systems (MDH, GOT, PGI, PGM, EST, IDH, LDH) gave clear zymograms. Among fifteen identified loci, eleven were polymorphic (GOT m, GOT f, PGI m, PGI f, PGM-2, EST f1, EST f2, EST m, LDH m, LDH f, IDH f). The mean number of alleles per locus (Am) varies between 1.93 for Ayata Lake and 1.33 for Mellah Marsh (Tab. II).
The highest value for both allelic richness (Ar = 1.45) and private allele richness (Ap = 0.32) are noted for Ayata Lake sample, while
Bizerte
lagoon is nearly close to Mellah lagoon in allelic richness (Ar = 1.21). However, the lowest is observed in Mellah marsh (1.11 for allelic richness and 0.06 for private allele richness) (Tab. II). For the expected heterozygosity, the highest value is
0.1413 ± 0.1803 in
Ayata Lake and the lowest one in Mellah marsh (He = 0.0294 ± 0.0644).
The estimation of Wright fixation index Fis, according to Weir and Cockerham in each sample, revealed a significant deviation from panmixia with Fis = 0.282 (
0.050
-0.505
, 95% CI) in
Bizerte
lagoon and Fis = 0.524 (
0.345
-0.653
, 95% CI) in
Ayata Lake
. The estimation of global
Fst
shows a high significant value (Fst = 0.1246, P = 1).
Removing
PGM-2 locus, this value decreases and becomes not significant (Fst = 0.015, P = 0.053).
We
also note that after a jacknife analysis, when removing
Ayata Lake
sample, we obtain a lower and not significant value of
Fst
(0.0064, P = 0.186).
Genetic
distances calculated among pairwise samples according to
Reynolds
et al.
(1983)
showed that the highest distances were between
Ayata Lake
and the three other populations.
The
same finding was observed with
Fst
values as shown in table III.
Table II. – Parameters of genetic diversity in the studied sites. LA: Ayata Lake, BZ: Bizerte Lagoon, LM: Mellah Lagoon, M: Mellah Marsh, Am: Average number of alleles per locus, Ar: Allelic richness, Ap: Private allelic richness, Ho: Observed heterozygosis, He: Expected heterozygosis, Fis: Fixation index; *** P <0.001; ns: not significant.
Table III. – Fst values and genetic distances (D) among pairwise populations (Reynolds
et al.
, 1983). LA: Ayata Lake, BZ: Bizerte Lagoon, LM: Mellah Lagoon, M: Mellah Marsh; *** P <0.001; ** P <0.05; ns: not significant.
Parameters |
LA |
BZ |
M |
LM |
Am |
1.9333 |
1.7333 |
1.3333 |
1.5333 |
Ar |
1.45 |
1.21 |
1.11 |
1.15 |
Ap |
0.32 |
0.11 |
0.06 |
0.08 |
Ho |
0.0681 ± 0.0977 |
0.0416 ± 0.0681 |
0.0263 ± 0.0542 |
0.0265 ± 0.0538 |
He |
0.1413 ± 0.1803 |
0.0577 ± 0.0904 |
0.0294 ± 0.0644 |
0.0398 ± 0.0547 |
Fis |
0.52371*** |
0.28201*** |
0.10817 ns |
0.33669*** |
D Fst |
LA |
BZ |
M |
LM |
LA |
0.19*** |
0.18*** |
0.20*** |
BZ |
0.21 |
–0.02ns |
0.03** |
M |
0.19 |
–0.02 |
–0.01ns |
LM |
0.22 |
0.03 |
–0.01 |
Figure 4. – Neighbour-joining tree on genetic distances D (
Reynolds
et al.
, 1983
) between
A. fasciatus
samples from four North African habitats.
Neighbour-joining tree was drawn basing on genetic distances of Reynold (
Reynolds
et al.
, 1983
). The tree differentiates the populations in two clusters. The first group, supported by a bootstrap value of 100, contains
Bizerte
lagoon with Mellah lagoon and Mellah marsh as sub clade. This clade shows also high relationships between the two samples of Mellah region. The second clade only includes Ayata lake samples (
Fig. 4
).