Diplodia parva sp. nov., a novel species of the family Botryosphaeriaceae isolated from soil in Korea
Author
Lee, Seung-Yeol
Author
Ten, Leonid N.
Author
Ayim, Benjamin Yaw
Author
Fulbert, Okouma Nguia
Author
Das, Kallol
Author
Jung, Hee-Young
text
Phytotaxa
2021
2021-08-13
514
2
105
117
http://dx.doi.org/10.11646/phytotaxa.514.2.2
journal article
10.11646/phytotaxa.514.2.2
1179-3163
5318785
Diplodia parva
S.Y. Lee, L.N. Ten & H.Y. Jung
sp. nov.
(
FIGURE 2
)
MycoBank: MB834635
Etymology: The specific epithet is derived from the Latin word
parva
(“small”), and refers to the small conidia size.
Typus
:
The
culture was isolated from soil in
Dongducheon
,
Korea
(
37°55’25.5”N
,
127°02’49.8”E
).
The
stock culture (
NIBRFG0000499836
) was deposited in the
National Institute of Biological Resources
(
NIBR
), metabolically inactive culture
.
TABLE 1.
GenBank accession numbers of the fungal strains used in this study for phylogenetic analyses.
Species
|
Strains
|
GenBank accession numbers ITS TEF1-α
|
Diplodia parva
|
KNU16-007
|
LC417238
|
LC435495
|
Diplodia africana
|
CBS 120835* |
EF445343
|
EF445382
|
Diplodia africana
|
CBS 121104 |
EF445344
|
EF445383
|
Diplodia agrifolia
|
CBS 132777* |
JN693507
|
JQ517317
|
Diplodia agrifolia
|
UCROK1429 |
JQ411412
|
JQ512121
|
Diplodia alatafructa
|
CBS 124931* |
FJ888460
|
FJ888444
|
Diplodia allocellula
|
CBS 130408* |
JQ239397
|
JQ239384
|
Diplodia allocellula
|
CBS 130410 |
JQ239399
|
JQ239386
|
Diplodia arengae
|
MFLU 17-2769 |
MG762771
|
MG762774
|
Diplodia bulgarica
|
CBS 124254* |
GQ923853
|
GQ923821
|
Diplodia bulgarica
|
CBS 124135 |
GQ923852
|
GQ923820
|
Diplodia corticola
|
CBS 112549* |
AY259100
|
AY573227
|
Diplodia corticola
|
CBS 112547 |
AY259110
|
DQ458872
|
Diplodia crataegicola
|
MFLU 15-1311* |
KT290244
|
KT290248
|
Diplodia cupressi
|
CBS 168.87* |
DQ458893
|
DQ458878
|
Diplodia cupressi
|
CBS 261.85 |
DQ458894
|
DQ458879
|
Diplodia estuarina
|
CMW41231* |
KP860831
|
KP860676
|
Diplodia fraxinii
|
CBS 136010* |
KF307700
|
KF318747
|
Diplodia galiicola
|
MFLU 15-1310* |
KT290245
|
KT290249
|
Diplodia insularis
|
CBS 140350* |
KX833072
|
KX833073
|
Diplodia intermedia
|
CBS 124462 |
GQ923858
|
GQ923826
|
Diplodia intermedia
|
CBS 124134 |
HM036528
|
GQ923851
|
Diplodia malorum
|
CBS 124130* |
GQ923865
|
GQ923833
|
Diplodia mutila
|
CBS 112553* |
AY259093
|
AY573219
|
Diplodia mutila
|
CBS 230.30 |
DQ458886
|
DQ458869
|
Diplodia neojuniperi
|
CPC 22753* |
KM006431
|
KM006462
|
Diplodia olivarum
|
CBS 121887* |
EU392302
|
EU392279
|
Diplodia olivarum
|
CBS 121886 |
EU392297
|
EU392274
|
Diplodia pseudoseriata
|
CBS 124906* |
EU080927
|
EU863181
|
Diplodia pseudoseriata
|
CBS 124907 |
EU080922
|
EU863179
|
Diplodia quercivora
|
CBS 133852* |
JX894205
|
JX894229
|
Diplodia rosacearum
|
CBS 141915* |
KT956270
|
KU378605
|
Diplodia rosulata
|
CBS 116470* |
EU430265
|
EU430267
|
Diplodia rosulata
|
CBS 116472 |
EU430266
|
EU430268
|
Diplodia sapinea
|
CBS 393.84 |
DQ458895
|
DQ458880
|
Diplodia sapinea
|
CBS 109725 |
DQ458896
|
DQ458881
|
Diplodia scrobiculata
|
CBS 118110* |
AY253292
|
AY624253
|
Diplodia seriata
|
CBS 112555 |
AY259094
|
AY573220
|
Diplodia seriata
|
CBS 119049 |
DQ458889
|
DQ458874
|
Diplodia subglobosa
|
CBS 124133* |
GQ923856
|
GQ923824
|
Diplodia tsugae
|
CBS 418.64* |
DQ458888
|
DQ458873
|
Lasiodiplodia theobromae
|
CBS 164.96 |
AY640255
|
AY640258
|
*Ex-type (ex-epitype) strains
The isolated strain is shown in bold
FIGURE 2.
Cultural and morphological characteristics of
Diplodia parva
KNU
16-007. A, B and C, pycnidia on pine needle; D, conidiophore; E, front and reverse view of the colony on PDA; F, front and reverse view of the colony on MEA; G, conidiogenous cells; H, conidia. Scale bars: A, B = 100 µm; C, D, G, H = 10 µm.
Habitat: The species was found in soil. The soil was a yellowish-brown, fine gravelly clay loam, with a low moisture capacity.
Description: The average diameters of colonies on PDA and MEA were
73.8 mm
and
64.9 mm
, respectively, after three days of incubation at 25 °C. The growth of mycelial colonies was round, and there were also variations in the diameter of the colonies across the different media (
FIGURE 2
). On MEA, white mycelium developed and turned dark gray; the reverse color was pale brown to dark brown at the center. On PDA, initially floccose white to brown mycelium developed and turned black after three days at 25 °C. Conidiomata were pycnidial, globose, immersed, unilocular, and dark brown to black; the ostiole was single, central, and circular; the conidiomata wall was brown to dark brown. Conidiophores reduced to conidiogenous cells. Conidiogenous cells were hyaline, subcylindrical to cylindrical, and smooth, arising from the inner wall of the locule. Conidia were oblong to clavate, oval, round and with a blunt edge apex, aseptate with a smooth thick wall, of a size in the range of 22.7– 29.3 μm × 8.9–10.9 μm, hyaline became yellowish to dark brown (n=100). Sometimes the wall edge was dark yellow (
FIGURE 2
).
Notes: Morphologically, strain KNU16-007 resembles the phylogenetically closely related
D. sapinea
,
Diplodia intermedia
A.J.L. Phillips, J. Lopes & A. Alves
,
D. scrobiculata
,
D. seriata
,
Diplodia rosacearum
S. Giambra, A. Alves, J. Armengol & S. Burruano
,
Diplodia crataegicola
Dissanayake, Camporesi & K.D. Hyde
, and
Diplodia citricarpa
Abdollahz. & Crous
, but the novel species is readily distinguishable from them by its conidia shape and size (
Table 2
). The average size of the conidia of strain KNU16-007 (26.0 μm × 9.9 μm) is much shorter than that of
D. sapinea
(41.5 μm × 16.3 μm),
D. scrobiculata
(39.5 μm × 14.0 μm), and
D. intermedia
(31.3 μm × 13.5 μm). The average conidia length of strain KNU16-007 is significantly longer than that of
D. crataegicola
(14 μm), and slightly longer than that of
D. citricarpa
(23.5 μm),
D
.
rosacearum
(23.7 μm), and
D. seriata
(24.5 μm). However, the width of its conidia is much shorter than that of
D. seriata
(13.0 μm) and
D
.
rosacearum
(12.8 μm). The conidial length:width ratio clearly differentiates strain KNU16-007 (2.63) from
D. crataegicola
(1.55),
D. seriata
(1.88), and
D
.
rosacearum
(1.9). Finally, in contrast to
D
.
citricarpa
and
D
.
rosacearum
, conidia of KNU16-007 do not become 1-septate with age.