Diplodia parva sp. nov., a novel species of the family Botryosphaeriaceae isolated from soil in Korea Author Lee, Seung-Yeol Author Ten, Leonid N. Author Ayim, Benjamin Yaw Author Fulbert, Okouma Nguia Author Das, Kallol Author Jung, Hee-Young text Phytotaxa 2021 2021-08-13 514 2 105 117 http://dx.doi.org/10.11646/phytotaxa.514.2.2 journal article 10.11646/phytotaxa.514.2.2 1179-3163 5318785 Diplodia parva S.Y. Lee, L.N. Ten & H.Y. Jung sp. nov. ( FIGURE 2 ) MycoBank: MB834635 Etymology: The specific epithet is derived from the Latin word parva (“small”), and refers to the small conidia size. Typus : The culture was isolated from soil in Dongducheon , Korea ( 37°55’25.5”N , 127°02’49.8”E ). The stock culture ( NIBRFG0000499836 ) was deposited in the National Institute of Biological Resources ( NIBR ), metabolically inactive culture . TABLE 1. GenBank accession numbers of the fungal strains used in this study for phylogenetic analyses.
Species Strains GenBank accession numbers ITS TEF1-α
Diplodia parva KNU16-007 LC417238 LC435495
Diplodia africana CBS 120835* EF445343 EF445382
Diplodia africana CBS 121104 EF445344 EF445383
Diplodia agrifolia CBS 132777* JN693507 JQ517317
Diplodia agrifolia UCROK1429 JQ411412 JQ512121
Diplodia alatafructa CBS 124931* FJ888460 FJ888444
Diplodia allocellula CBS 130408* JQ239397 JQ239384
Diplodia allocellula CBS 130410 JQ239399 JQ239386
Diplodia arengae MFLU 17-2769 MG762771 MG762774
Diplodia bulgarica CBS 124254* GQ923853 GQ923821
Diplodia bulgarica CBS 124135 GQ923852 GQ923820
Diplodia corticola CBS 112549* AY259100 AY573227
Diplodia corticola CBS 112547 AY259110 DQ458872
Diplodia crataegicola MFLU 15-1311* KT290244 KT290248
Diplodia cupressi CBS 168.87* DQ458893 DQ458878
Diplodia cupressi CBS 261.85 DQ458894 DQ458879
Diplodia estuarina CMW41231* KP860831 KP860676
Diplodia fraxinii CBS 136010* KF307700 KF318747
Diplodia galiicola MFLU 15-1310* KT290245 KT290249
Diplodia insularis CBS 140350* KX833072 KX833073
Diplodia intermedia CBS 124462 GQ923858 GQ923826
Diplodia intermedia CBS 124134 HM036528 GQ923851
Diplodia malorum CBS 124130* GQ923865 GQ923833
Diplodia mutila CBS 112553* AY259093 AY573219
Diplodia mutila CBS 230.30 DQ458886 DQ458869
Diplodia neojuniperi CPC 22753* KM006431 KM006462
Diplodia olivarum CBS 121887* EU392302 EU392279
Diplodia olivarum CBS 121886 EU392297 EU392274
Diplodia pseudoseriata CBS 124906* EU080927 EU863181
Diplodia pseudoseriata CBS 124907 EU080922 EU863179
Diplodia quercivora CBS 133852* JX894205 JX894229
Diplodia rosacearum CBS 141915* KT956270 KU378605
Diplodia rosulata CBS 116470* EU430265 EU430267
Diplodia rosulata CBS 116472 EU430266 EU430268
Diplodia sapinea CBS 393.84 DQ458895 DQ458880
Diplodia sapinea CBS 109725 DQ458896 DQ458881
Diplodia scrobiculata CBS 118110* AY253292 AY624253
Diplodia seriata CBS 112555 AY259094 AY573220
Diplodia seriata CBS 119049 DQ458889 DQ458874
Diplodia subglobosa CBS 124133* GQ923856 GQ923824
Diplodia tsugae CBS 418.64* DQ458888 DQ458873
Lasiodiplodia theobromae CBS 164.96 AY640255 AY640258
*Ex-type (ex-epitype) strains The isolated strain is shown in bold FIGURE 2. Cultural and morphological characteristics of Diplodia parva KNU 16-007. A, B and C, pycnidia on pine needle; D, conidiophore; E, front and reverse view of the colony on PDA; F, front and reverse view of the colony on MEA; G, conidiogenous cells; H, conidia. Scale bars: A, B = 100 µm; C, D, G, H = 10 µm. Habitat: The species was found in soil. The soil was a yellowish-brown, fine gravelly clay loam, with a low moisture capacity. Description: The average diameters of colonies on PDA and MEA were 73.8 mm and 64.9 mm , respectively, after three days of incubation at 25 °C. The growth of mycelial colonies was round, and there were also variations in the diameter of the colonies across the different media ( FIGURE 2 ). On MEA, white mycelium developed and turned dark gray; the reverse color was pale brown to dark brown at the center. On PDA, initially floccose white to brown mycelium developed and turned black after three days at 25 °C. Conidiomata were pycnidial, globose, immersed, unilocular, and dark brown to black; the ostiole was single, central, and circular; the conidiomata wall was brown to dark brown. Conidiophores reduced to conidiogenous cells. Conidiogenous cells were hyaline, subcylindrical to cylindrical, and smooth, arising from the inner wall of the locule. Conidia were oblong to clavate, oval, round and with a blunt edge apex, aseptate with a smooth thick wall, of a size in the range of 22.7– 29.3 μm × 8.9–10.9 μm, hyaline became yellowish to dark brown (n=100). Sometimes the wall edge was dark yellow ( FIGURE 2 ). Notes: Morphologically, strain KNU16-007 resembles the phylogenetically closely related D. sapinea , Diplodia intermedia A.J.L. Phillips, J. Lopes & A. Alves , D. scrobiculata , D. seriata , Diplodia rosacearum S. Giambra, A. Alves, J. Armengol & S. Burruano , Diplodia crataegicola Dissanayake, Camporesi & K.D. Hyde , and Diplodia citricarpa Abdollahz. & Crous , but the novel species is readily distinguishable from them by its conidia shape and size ( Table 2 ). The average size of the conidia of strain KNU16-007 (26.0 μm × 9.9 μm) is much shorter than that of D. sapinea (41.5 μm × 16.3 μm), D. scrobiculata (39.5 μm × 14.0 μm), and D. intermedia (31.3 μm × 13.5 μm). The average conidia length of strain KNU16-007 is significantly longer than that of D. crataegicola (14 μm), and slightly longer than that of D. citricarpa (23.5 μm), D . rosacearum (23.7 μm), and D. seriata (24.5 μm). However, the width of its conidia is much shorter than that of D. seriata (13.0 μm) and D . rosacearum (12.8 μm). The conidial length:width ratio clearly differentiates strain KNU16-007 (2.63) from D. crataegicola (1.55), D. seriata (1.88), and D . rosacearum (1.9). Finally, in contrast to D . citricarpa and D . rosacearum , conidia of KNU16-007 do not become 1-septate with age.