The first fossil record of an aquatic caecilian (Gymnophiona: Typhlonectidae)
Author
Santos, Rodolfo Otávio
Instituto de Biociências, Universidade de São Paulo, Rua do Matão, Tv. 14, 05508 * 090, São Paulo, SP, Brazil
rodolfosantos013@gmail.com
Author
Wilkinson, Mark
Herpetology Lab, The Natural History Museum, Cromwell Rd, South Kensington, SW 7 5 BD, London, UK
Author
Ribeiro, do Couto Graziela
Museu de História Natural de Taubaté Doutor Herculano Alvarenga, Rua Juvenal Dias de Carvalho, Jardim do Sol, 12070 * 640, Taubaté, SP, Brazil
Author
Carvalho, Alberto B.
Serviço de Vertebrados, Museu de Zoologia da Universidade de São Paulo, Avenida Nazaré 481, 04263 * 000, São Paulo, SP, Brazil
Author
Zaher, Hussam
Serviço de Vertebrados, Museu de Zoologia da Universidade de São Paulo, Avenida Nazaré 481, 04263 * 000, São Paulo, SP, Brazil
text
Zoological Journal of the Linnean Society
2024
2024-01-08
202
2
1
23
https://doi.org/10.1093/zoolinnean/zlad188
journal article
306258
10.1093/zoolinnean/zlad188
b8ca0967-bd1c-4be7-a364-da2db5468f38
0024-4082
14333139
Ymboirana acrux
sp.nov.
ZooBank registration:
urn:lsid:zoobank.org:act:D6487148- 6E74-436A -83C9-C89AC455B4BB
Diagnosis:
As for genus.
Holotype
:
DGM 1462-R
(
Figs 2–9
,
12A
,
13A
,
14A
,
15A
1
, A
2
; Supporting Information,
Figs S1
, S
2
), housed at Museu de Ciências da Terra (formerly Divisão de Geologia e Mineralogia of the Departamento Nacional de Produção Mineral), Rio de Janeiro, Brazil
. The specimen consists of part and counterpart preserving the anterior portion of a cae - cilian skeleton (with an estimated length of around
20 cm
), including skull, mandibles, and the anteriormost portion of the vertebral column, including the atlas, 66 trunk vertebrae, and some ribs.
Figure 2.
Fossil slabs containing the holotype (DGM 1462-R) of
Ymboirana acrux
gen. et sp. nov.
(A1, B1). CT -scans of the part (A2) and counterpart (B2) of the holotype. Scale bar = 1 cm.
Figure 3.
CT -scans of the two skull parts of
Ymboirana acrux
gen. et sp. nov.
Top part in dorsal (A) and ventral (B) views. Bottom part in dorsal (C) and ventral (D) views. See Appendix for abbreviations. Scale bar = 1 mm.
Type locality and horizon:
Outcrop located on the right bank of the river
Paraíba do Sul
,
1.6 km
north -east of the municipality of
Tremembé
,
São Paulo
,
Brazil
(
22º94
ʹ
50
ʹʹ
S
;
45º53
ʹ
55
ʹʹ
W
). These deposits are assigned to the Oligocene age Tremembé Formation, and lie within Taubaté Basin.
Etymology:
The epithet is a noun in apposition and refers to
Alpha Crucis
, also known as
Star of Magellan. This
star (actually a multiple star system) represents, in the Brazilian national flag, the state of
São Paulo
, where the fossil was found.
Figure 4.
Skull bones of
Ymboirana acrux
gen. et sp. nov.
Collapsed fragments of the posterolateral region of the
os basale
below the right parietal in ventral oblique view (A). Left quadrate and pseudangular in lateral view (B). Left occipital region of the
os basale
in lateral (C), posterior (D), and dorsal (E) views. Fragments of the left squamosal in lateral view (F). Fragment tentatively assigned to the stapes (G). See Appendix for abbreviations. Scale bars = 1 mm; upper scale bar is for A–F, and the lower one is for G.
Description
Skull
The skull is severely damaged and strongly dorsoventrally compressed (
Fig. 3
). Most of the bones are broken into short or indistinct fragments; however, both parietals and the pos - terior portion of the left pseudangular are well preserved.
Some fragments are tentatively assigned to the nasopremaxilla, maxillopalatine, frontals, squamosals, quadrates, stapes,
os basale
, and pseudodentaries. Many tooth crowns are also pre - sent, most of them disarticulated and a few still attached to their pedicels and to their corresponding jaw bones. Given that the skull bones may be difficult to distinguish due to the damaged condition of the fossil, we also provide a figure of the skull in the Supporting Information (
Fig. S2
) with an outline line drawing and using lighter shades of colours.
Figure 5.
Lower jaw of
Ymboirana acrux
gen. et sp. nov.
Mandibles in dorsal (A) and ventral (B) views. Left pseudangular in lateral (C), posterior oblique (D), and dorsal (E) views. Dotted lines indicate the region of the contact between the pseudangular and pseudodentary. See Appendix for abbreviations. Scale bars = 1 mm; upper scale bar is for A, B, and the lower one is for C–E.
Nasopremaxillae:
Fragments of the presumed nasopremaxillae are present, identified primarily on the basis of their position. Due to their poor preservation, few diagnostic features can be ob - served. However, based on the relative position of the fragments in relation to the lower jaw, we interpret the nasopremaxillae as forming an anteriorly projected snout and, thus, the mouth to be subterminal. Several other fragments were also preserved but lack diagnostic features.
Maxillopalatines:
Both maxillopalatines are partially pre - served though severely damaged. The outer tooth rows of both maxillopalatines are present but incompletely preserved, so we could recognize only 12 pedicels. A fragment tentatively inter - preted as a portion of the left vomeropalatine tooth row is lo - cated medially and bears seven pedicels. Several other fragments, possibly belonging to the maxillopalatines, are present but do not exhibit any diagnostic features.
Figure 6.
Isolated tooth crowns found near the skull of
Ymboirana acrux
gen. et sp. nov
.. Scale bar = 1 mm.
Parietals:
These are the best -preserved skull bones in the spe - cimen and are almost complete, except for a short dorsolateral portion missing from the left. In dorsal view, except for their anterolateral pointed corners, both parietals exhibit a roughly trapezoidal shape (
Figs 4A
,
12A
). The dorsal surface is smooth, lacking ornamentations in the form of small neurovascular for - amina that are common in some caecilians. The parietals are also flat medially but have a pronounced ventrally oriented slope at their posterolateral margins. Collapsed fragments of the
os basale
cover the ventral surfaces of the parietals.
Frontals:
Located immediately anterior to both parietals, lie two poorly preserved bones, tentatively identified as parts of the frontals. They are broken and show an irregular shape, and similar to the parietals, the preserved portions of the dorsal sur - face of both frontals lack small neurovascular foramina.
Figure 7.
Vertebral column of
Ymboirana acrux
gen. et sp. nov.
(A). Articulated trunk vertebrae from the posterior portion of the body in dorsal (B) and lateral (C) views. See Appendix for abbreviations. Upper scale bar = 1 cm. Lower scale bar = 1 mm; upper scale bar is for A, and the lower one is for B, C.
Squamosals:
Some fragments are tentatively assigned to the left squamosal (
Fig. 4F
). They are located close to the left quadrate and above the left parietal. The squamosal is roughly rectangular and bears a postorbital process with a slightly concave margin.
The only evidence of ornamentation is a single neurovascular foramen.
Quadrates:
Both quadrates are preserved but broken (
Figs 3
,
4B
). Portions of the left quadrate are located just above the articular facet of the pseudangular and not so widely separated from the maxillopalatines. The right quadrate is preserved far forward, next to fragments interpreted as parts of the pseudodentary. Due to the damaged condition of the squamosals, the degree of dorsal exposure of the quadrates cannot be determined. The pterygoid process of the left quadrate is present and elongate. A distinctive otic process is absent from both quadrates.
Figure 8.
Postcranial elements of
Ymboirana acrux
gen. et sp. nov
.. Atlas in dorsal (A) and ventral (B) views. Ventral part of atlas (i.e. atlantal centrum and cotyles) in anterior (C), posterior (D), and oblique left lateral (E) views. Second vertebra in dorsal (F) and ventral (G) views. See Appendix for abbreviations. Scale bar = 1 mm.
Stapes:
A small fragment located on the posterodorsal portion of the skull, close to the left quadrate, is tentatively interpreted as the left stapes (
Figs 4G
,
13A
). This fragment is composed of two different portions (i.e. a short and slender stapedial style and a small footplate) and is imperforate.
Os basale
:
Several small broken parts, scattered about the skull but mainly at its posterior portion appear to represent different regions of the
os basale
. One of these fragments, located just behind the left pseudangular and still articulated with the atlas, corresponds to a posterior portion of the
os basale
, including the left occipital condyle (
Fig. 4C–E
; Supporting Information,
Fig. S1
). A jugular foramen is present just anterior to the condyle. The region of the otic capsule is located anterior to the jugular foramen, but its external wall is badly damaged, whereas parts of the internal walls of the otic capsule are better preserved and bear the perilymphatic foramen and other foramina for branches of the auditory nerve. A large fragment preserved collapsed on the ventral surface of the right parietal bears a carotid for - amen (
Fig. 4A
), and lateral to this foramen, a lip of bone with a distinctive articular surface is interpreted as the basipterygoid process.
Figure 9.
Postcranial elements of
Ymboirana acrux
gen. et sp. nov
.. Trunk vertebra in dorsal (A), ventral (B), and oblique left lateral (C) views. Ribs (D, E) in lateral view. See Appendix for abbreviations. Scale bar = 1 mm.
Lower jaw
Pseudangulars:
Only the well -preserved posteriormost portion of the left pseudangular is discernable (
Figs 4B
,
5C–E
,
14A
). In lateral view, a recurved retroarticular process is present, bearing a well -developed lateral crest. The sutural surface that contacts the pseudodentary is excavated in the anterolateral margin. The processus condyloides is limited to a weakly developed process. In dorsal view, the articular surface is anteriorly positioned, concave, and surrounded posteriorly by the short processus condyloides. There are no signs of a preserved fossa or a canalis primordialis immediately anterior to the articular surface. The distinct processus internus is present, anteromedially oriented, and shows a roughly quadrangular outline. The retroarticular process curves medially mainly along its posterior portion. In medial view, two foramina of the ramus intermandibularis are present, one located at the posterior base of the processus internus and the other excavated anteriorly to it.
Pseudodentaries:
Both pseudodentaries are partially preserved, including the region of the mandibular symphysis (
Fig. 5A, B
). Whereas the left one is represented by its anteriormost portion, in the right one the posterior portion is also preserved. Pedicels are present in the dorsal surface of the right pseudodentary, al - though the exact number is difficult to estimate. The pedicels are arranged in two rows, with definitive inner mandibular (i.e. splenial) pedicels being limited to the symphyseal region (based on the preserved pedicels, at least four are present on the right pseudodentary). The outer tooth row is also represented only by damaged pedicels, and we are able to recognize just 16 of them.
Dentition
We recognized at least 48 scattered tooth crowns near the skull (
Fig. 6
). Some teeth were also preserved still attached to the pedicels. Most of them are similar in size (around
0.5 mm
in length) and shape: slender, conical, recurved, and monocusped. Based on the size of the preserved pedicels, the teeth of the inner rows are a little smaller than those of the outer rows. The apex is pointed but lateral flanges are seemingly absent. Due to the dam - aged condition of the fossil, it was not possible to verify the exact total number of teeth; however, the pedicel arrangement allows confirmation of the ancestral caecilian double tooth rows in the upper and lower jaws.
Postcranium
Postcranial elements assigned to
Ymboirana acrux
comprise the fragmented atlas followed by 66 subsequent vertebrae (most of them still articulated, although in the median portion of the vertebral column they are scattered) and some ribs (
Fig. 7
). An unknown number of posteriormost vertebrae are not preserved.
Atlas:
Broken elements interpreted as the atlantal centrum and the neural arch were preserved separately in the two slabs (
Figs 8A–E
,
15A
1
, A
2
). Both atlantal cotyles are present and fused anteroventrally but with a pronounced median notch between them. The spinal nerve foramen is preserved only in the pos - terior surface of the left cotyle and is oriented posterolaterally. The centrum has a length considerably shorter than the fol - lowing vertebrae, and its ventral surface is smooth, bearing a medially positioned fossa and no hypapophyseal keel. The pos - terior cotyle has a roughly oval outline and the notochordal fossa is deep. Only a few portions of the neural arch were preserved. Two separated and anteriorly directed projections are present and are interpreted as the anterior bases of the lateral pedicles. The dorsal surface of the atlas is smooth, with no evidence of a neural spine.
Second vertebra:
The second vertebra is preserved still ar - ticulated to the atlas, but severely damaged (
Fig. 8F, G
). The neural arch is completely collapsed over the centrum. The two prezygapophyses are preserved and exhibit a flat articular surface. On the ventral surface of the centrum, there is a well -developed hypapophyseal keel, but basapophyseal processes seem to be ab - sent. No rib -like elements can be confidently identified near the second vertebra.
Trunk vertebrae:
The exact number of preserved trunk verte - brae (
Figs 7
,
9A–C
) cannot be determined because of exten - sive fragmentation and disarticulation. All of these vertebrae show diagenetic dorsoventral compression. They are elongate anteroposteriorly and have medially constricted amphicoelous centra, well -developed basapophyseal processes projecting anteroventrally, a pronounced hypapophyseal keel, and low neural arches. Poorly developed neural spines, limited to faint ridges, are present in some, but not all, of the posteriormost pre - served vertebrae. Basapophyseal processes bear well -developed and convex ventral ridges, and this feature is particularly pro - nounced in some vertebrae preserved at the posterior region of the
holotype
(
Figs 7B, C
,
9B, C
).
Ribs:
Preserved ribs are hard to distinguish. Some are still articu - lated with vertebrae, but some are isolated and are relatively well preserved (
Fig. 9D, E
). They have a relatively straight outline along their entire length, lacking pronounced posterior flexion. The ribs are dorsoventrally broad anteriorly, but they gradually narrow distally. The tuberculum and capitulum have straight or more rounded tips, whereas the distal tips are pointed. The capit - ulum is very elongate anteriorly in the preserved ribs.
DISCUSSION
The assignment of
Ymboirana acrux
to
Gymnophiona
is sup - ported by several uniquely derived features, such as the pres - ence of pseudangulars, pseudodentaries, and amphicoelous vertebrae bearing medially constricted centra, pronounced hypapophyseal keels, and anterior basapophyseal processes (
Wake
1980
,
Wilkinson and Nussbaum 2006
). The Late Triassic
Funcusvermis gilmorei
Kligman
et al.
2023
, Early Jurassic
Eocaecilia micropodia
Jenkins and Walsh 1993
, Early Cretaceous
Rubricacaecilia monbaroni
Evans and Sigogneau
-Russell 2001, and Oligocene
Ymboirana acrux
represent the only named fossils of gymnophionomorphs with preserved skulls and postcranial elements known so far. Based on the anatomical comparisons detailed below, we conclude that
Ymboirana acrux
should be considered a member of
Typhlonectidae
and is thus the only taxon among the aforementioned fossil species belonging to crown group
Gymnophiona
.
The skull roof
A major variation in caecilian skulls is the presence or ab - sence of distinct upper temporal fenestrae: conditions termed zygokrotaphy and stegokrotaphy, respectively (
Figs 10
,
11
). Most modern caecilians are more stegokrotaphic than zygokrotaphic, with at most a very narrow temporal gap between parietals and squamosals (
Figs 10A
,
11A
). In zygokrotaphic rhinatrematids (
Figs 10B
,
11B
), the ancestral jaw -closing muscles pass through the temporal fenestra and extend to the sagittal crest at the mid - line of the skull roof. In the other strongly zygokrotaphic caecil - ians, the jaw -closing muscles do not pass through the temporal fenestra or extend on to the skull roof (
Figs10C
,
11C
; Supporting Information,
Figs S3
, S
4
). Rhinatrematid zygokrotaphy is con - sidered primary (ancestral for caecilians, see:
Nussbaum 1977
) with zygokrotaphy in other caecilians (i.e. typhlonectids,
Scolecomorphus
, and
Geotrypetes
) secondary and having inde - pendently evolved at least three times (e.g.
Nussbaum 1977
,
Wilkinson 1997
,
Kleinteich
et al.
2012
).
Figure 10.
Caecilian skulls in dorsal view. Skull of
Siphonops paulensis
(A). Skull of
Rhinatrema bivittatum
(B). Skull of
Chthonerpeton indistinctum
(C). Interpretive line drawing of
Ymboirana acrux
gen. et sp. nov.
skull (D). See Appendix for abbreviations. Scale bar = 1 mm. Interpretive reconstruction made by Lazare Elbaz.
Figure 11.
Caecilian skulls in lateral view. Skull of
Siphonops paulensis
(A). Skull of
Rhinatrema bivittatum
(B). Skull of
Chthonerpeton indistinctum
(C). Interpretive line drawing of
Ymboirana acrux
gen. et sp. nov.
skull (D). See Appendix for abbreviations. Scale bar = 1 mm. Interpretive reconstruction made by Lazare Elbaz.
The fragmentary condition of the skull of the unique spe - cimen of
Ymboirana
, particularly the poor preservation of the squamosals, precludes determination of whether
Ymboirana
was stegokraphic or zygokrotaphic. Well -developed sagittal crests on the parietals, a feature typically associated with primarily zygokrotaphic skulls (
Nussbaum 1977
,
Wilkinson
et al.
2021
), are not present in
Ymboirana
, and the parietals are not expanded laterally as in the secondarily stegokrotaphic
Crotaphatrema
(
Nussbaum 1985
)
, but it is not possible to rule out primary stegokrotaphy or secondary zygokrotaphy based solely on the morphology of the parietals. The parietals of
Ymboirana
have a median flattened portion and a lateral ventrally sloping region (
Fig. 12A
), which resembles secondarily zygokrotaphic caecil - ians (e.g. typhlonectids and scolecomorphids) but is also found in some more stegokrotaphic taxa (e.g. caeciliids).
Compared with typhlonectids, the parietal shape in
Ymboirana
is very similar to
Chthonerpeton
and
Nectocaecilia
(
Figs 10C
,
11C
; Supporting Information,
Figs S3A, S
4A
) re - garding the degree of ventral sloping, whereas in
Potomotyphlus kaupii
and
Typhlonectes
(Supporting Information,
Figs S3B, C, S
4B, C
) the slope is less -pronounced and in
Atretochoana eiselti
it is completely absent (
Wilkinson and Nussbaum 1997
). Despite the uncertainty with respect to the skull roof shape of
Ymboirana
, its parietal morphology allows us to rule out putative taxonomic affinities with rhinatrematids and is at least consistent with the morphology present in typhlonectids.
Maxillopalatines, nasopremaxillae, and septomaxillae
The anterior portion of the skull is severely damaged making the identification of nasopremaxillae and maxillopalatines tentative and based mainly on their positions and the presence of tooth pedi - cels. In our reconstruction of the fossil skull (
Figs 10D
,
11D
), we also assume that there is no separate septomaxillae in the snout.One could argue that there is no evidence for the lack of septomaxillae in
Ymboirana
, as well as for the fusion of maxillae with the palatines, and the nasals with the premaxillae. However, in all adult modern caecilians the maxillae are fused to the palatines (e.g.
Taylor 1969
), and separate nasals, premaxillae, and septomaxillae are known ex - clusively in rhinatrematids, ichthyophiids, scolecomorphids, and, with the exception of the septomaxillae, in
Herpele
(e.g.
Taylor 1969
,
Müller
et al.
2005
,
Wilkinson
et al.
2011
), which all differ from
Ymboirana
in several other respects (for more details, see Diagnosis). Thus, in the absence of evidence favouring the con - trary, we assume that
Ymboirana
exhibits the same skull configur - ation as all other known typhlonectids.
Quadrates
The quadrates of
Ymboirana
seem to lack distinct otic pro - cesses, as expected given the narrow and delicate morphology of the bone tentatively interpreted as the stapes. This condition is common among typhlonectids where, with the exception of
Chthonerpeton
and
Nectocaecilia
, the otic process is limited to a faint bony projection or may even be completely absent (
Wilkinson and Nussbaum 1997
). Another distinct preserved portion of the quadrates in
Ymboirana
comprises the ptery - goid process. Caecilians vary in the form of articulation be - tween the quadrate and the maxillopalatine (
Wake
2003
). In rhinatrematids and ichthyophiids, these bones are separated ventrally by a large pterygoid, whereas in many teresomatan cae - cilians the quadrates bear a well -developed, anteriorly directed pterygoid process and there is a small bone, which has been variously named, that we interpret as a reduced pterygoid (for a review, see:
Müller
et al.
2005
) that lies between, or lateral to, the pterygoid process of the quadrate and the maxillopalatine. In some other teresomatan caecilians, including typhlonectids, the pterygoid process of each quadrate is particularly well developed (at least in some cases incorporating an embryonic pterygoid; see:
Ramaswami 1948
), and there is no separate element be - tween the quadrate and the maxillopalatine in adults.
Ymboirana
exhibits a large pterygoid process of the quadrate and there are no signs of an isolated bone between the quadrate and the pre - served portions of the maxillopalatine, which is consistent with typhlonectid morphology, although the damaged and fragmen - tary nature of the fossil necessarily limits confidence in the ab - sence of such an element.
Stapes
All caecilians, except adult scolecomorphids, have stapes (e.g.
Nussbaum 1985
,
Müller
et al.
2009
). Caecilian stapes comprise a typically broad footplate that fills the foramen ovalis and a nar - rower and elongate stapedial style that usually articulates with the otic process of the quadrate (e.g.
Wilkinson and Nussbaum 1997
). Caecilians vary in the presence or absence of a stapedial foramen (or groove) in the base of the stapedial style (
Fig. 13
), a feature present in rhinatrematids, ichthyophiids, chikilids, and most herpelids, but absent in all other taxa (e.g.
Wilkinson
et al.
2011
,
Kamei
et al.
2012
, personal observation). The frag - ment tentatively identified as the stapes in
Ymboirana
is short and narrow, with no sign of a stapedial foramen. Compared to typhlonectids (
Fig. 13B, C
), the stapes in
Ymboirana
closely re - sembles the condition present in
Potomotyphlus
, as in both taxa this element is limited to a short, rod -like style and a small foot - plate (
Wilkinson and Nussbaum 1997
).
Os basale
The azygous os basale is a distinctive compound bone of cae - cilians that forms the posterior, posterolateral walls, and floor of the cranial cavity (
Sarasin and Sarasin 1890
). This element includes the otic capsules and bears numerous processes (e.g. parasphenoid and basipterygoid processes) and foramina (e.g. foramen ovalis, jugular foramen, and antotic foramina; see:
Maddin 2011
). In the
holotype
of
Ymboirana
, the os basale is represented by scattered fragments, few of which are sufficiently large to enable identification of features that might help inform the affinities of
Ymboirana
, but a well -developed basipterygoid process places it within Teresomata.
Figure 12.
Paired parietals of four different caecilian species, all in dorsal view.
Ymboirana acrux
gen. et sp. nov.
(A),
Rhinatrema bivittatum
(B),
Typhlonectes natans
(C), and
Herpele squalostoma
(D). See Appendix for abbreviations. Scale bar = 1 mm.
Lower jaws
Caecilian mandibles each have only two bones, named by
Eifertinger (1933)
: a toothed pseudodentary anteriorly and an adentigerous pseudangular posteriorly that articulates with the upper jaw and has a pronounced and distinctive retroarticular process (e.g.
Nussbaum 1977
,
1983
). The left pseudangular is one of the best -preserved bones of
Ymboirana acrux
, and is virtually complete, except for its anteriormost part. The retroarticular process is robust, posteriorly elongate, and re - curved, unlike the narrow, straight, and horizontal condition observed in rhinatrematids (
Nussbaum 1977
,
1983
). A distinct processus internus, a feature common to almost all caecilians (except scolecomorphids;
Nussbaum 1985
), is also present in the pseudangular of
Ymboirana
.
Figure 13.
Left stapes of six different caecilian species, all in lateral view. Fragment tentatively identified as the stapes of
Ymboirana acrux
gen. et sp. nov.
(A),
Potomotyphlus kaupii
(B),
Typhlonectes natans
(C),
Caecilia
sp.
(D),
Siphonops paulensis
(E), and
Rhinatrema bivittatum
(F). See Appendix for abbreviations. Scale bar = 1 mm.
The orientation of the posterior end of the retroarticular process is variable among caecilians (
Fig. 14
). In some taxa, the distal tips aredirectedalmostcompletelydorsomedially(e.g.
Scolecomorphus
,
Uraeotyphlus
, and
Atretochoana
), whereas in most species they are directed posterodorsally (e.g. caeciliids, ichthyophiids, and most typhlonectids). In
Ymboirana
it is oriented posteriorly, a condition found in some, but not all, individuals of
Typhlonectes natans
and
T
.
compressicauda
. The taxonomic variation regarding this feature remains poorly documented and understood among caecilians, but the shape of the retroarticular process of
Ymboirana
is at least compatible with our interpretation of it as a typhlonectid.
Caecilian pseudangulars typically have a well -developed and dorsally projecting processus condyloides, posterior to the articular surface (
Fig. 11B–D, B
1–D1
; Supporting Information,
Fig. S4
). However, the processus condyloides of
Ymboirana acrux
is small and faint. Additionally, as far as is known, in all caecilians (except
Atretochoana
;
Wilkinson and Nussbaum 1997
) the fossa at the opening of the canalis primordialis is immediately anterior to the articular surface of pseudangular. In
Ymboirana acrux
, the dorsal region of the pseudangular, anterior to the articular surface, is flat and without signs of such a fossa or a distinct canalis primordialis. We assume this fossa bearing the canalis primordialis should presumably be located in the unpreserved anteriormost portion of the pseudangular, as its complete ab - sence is unknown among caecilians and would imply a complete rearrangement in the skull and lower jaw.
Figure 14.
Left pseudangulars of four different caecilian species.
Ymboirana acrux
gen. et sp. nov.
in lateral (A1) and dorsal (A2) views.
Rhinatrema bivittatum
in lateral (B1) and dorsal (B2) views.
Scolecomorphus ulugurensis
in lateral (C1) and dorsal (C2) views.
Typhlonectes natans
in lateral (D1) and dorsal (D2) views. See Appendix for abbreviations. Scale bar = 1 mm.
The dentition
Caecilian teeth are pedicellate, mono or bicuspid, and arranged in two upper and one or two lower tooth rows (e.g.
Wake
and Wurst 1979
). Adult tooth crown morphology is fairly simple among caecilians but there are some important variations that make tooth morphology helpful for interpreting the affinities of
Ymboirana acrux
, including the number of cusps, degree of size heterodonty within and between tooth rows, degree of recur - vature, the extent to which teeth are slender or robust, the shape of the distal tip, and the presence or absence of blade -like lateral flanges, crenulations, or serrations (e.g.
Wake
and Wurst 1979
,
Greven 1986
,
Wilkinson 1991
,
Wilkinson
et al.
2013
). Structures resembling pedicels located near the mandibular symphyses are tentatively interpreted as forming an inner mandibulary tooth row in
Ymboirana acrux
that allows us to exclude it from the
Siphonopidae
-crown, which lack inner mandibular teeth (
Wilkinson
et al.
2011
).
Bicuspid teeth are considered primitive within caecilians, and are found (with or without monocusped teeth) in all rhinatrematids, ichthyophiids, chikilids, and grandisoniids, dermophiids (except
Dermophis
), the siphonopids
Microcaecilia
and
Brasilotyphlus
, and the herpelid
Boulengerula
(
Wake
and Wurst 1979
,
Nussbaum 1988
,
Wilkinson 1997
; M.W. personal observation). Like caeciliids, typhlonectids, siphonoform siphonopids, scolecomorphids,
Herpele
, and
Dermophis
,
Ymboirana
has only monocuspid teeth. There appears to be little variation in the size of individual teeth either within or between toothrowsin
Ymboirana
,whichissimilartoaquatictyphlonectids (
Atretochoana
,
Typhlonectes
, and
Potomotyphlus
) and different from the more semi -aquatic typhlonectids
Chthonerpeton
and
Nectocaecilia
, as well as many non -typhlonectids (including scolecomorphids, caeciliids, and herpelids). Judged by their pedicels, teeth of the inner rows are slightly smaller than those of the outer rows, which is typical of aquatic caecilians.
Wilkinson (1991)
characterized typhlonectid teeth as mostly conical, recurved, and bearing lateral flanges. Exceptional morphologies include
Typhlonectes compressicauda
, which dif - fers from the other typhlonectids in having dilated, spoon, or chisel -shaped tooth crowns (
Greven 1986
), and the monotypic
Potomotyphlus
, which has very slender teeth that are more uni - form and less conical proximally. None of the preserved teeth in
Ymboirana
have the distinctive morphologies described for
T. compressicauda
or
Potomotyphlus
, and they also seem to lack lat - eral flanges, but these structures are diminutive and consequently especially difficult to observe, given the available resolution in our CT -scans and the fact that no tooth crowns were preserved in the surface of the slabs to allow direct observations.
The vertebral column
Variation in the vertebral morphology of caecilians exists (e.g.
Peter 1894
,
Estes and
Wake
1972
,
Taylor 1977
,
Wilkinson and Nussbaum 1997
), but is very incompletely known and its utility in systematics is underdeveloped. Many postcranial elements, including the atlas and the second vertebrae, are preserved in the
holotype
of
Ymboirana acrux
. Because the posterior region of the body was not preserved, and some portions of the ver - tebral column are damaged or compressed, it is not possible to determine the exact number of vertebrae of
Ymboirana acrux
(a total of 67 are recognized). Based on the shape of the preserved posteriormost ones, and comparisons with other caecilians, we conclude that approximately one -half of the specimen’s total body length is preserved. In modern caecilians, the known range in vertebral number is from 68 to 307 (
Lowie
et al.
2022b
), but it is well -established that vertebral counts vary intraspecifically (e.g.
Parker 1958
,
Taylor 1968
). Given the constraints on interpreting this character, we only made limited use of it, allowing us to rule out putative affinities between
Ymboirana
and abbreviated taxa (e.g. some species of
Hypogeophis
; see:
Maddock
et al.
2018
).
The neural arch of the atlas in
Ymboirana
lacks a distinct neural spine. Among extant typhlonectids, well -developed neural spines in the atlas are present in
Chthonerpeton
and
Nectocaecilia
(
Fig. 15B
2, D2
), whereas in the remaining typhlonectids (e.g.
Typhlonectes
and
Atretochoana
) they are limited to faint ridges or even completely absent, such as in
Potomotyphlus
(
Fig. 15C
2
).
Ymboirana
trunk vertebrae have the typical pattern of cae - cilian vertebrae, including the presence of medially constricted amphicoelous centra bearing well -developed hypapophyseal keels and large, anteriorly projecting basapophyseal processes (e.g.
Wake
1980
). Morphological variations within this general pattern are virtually unknown for most caecilians, hampering our interpretations; however,
Typhlonectidae
are the only family in which differences in the postcranial osteology have been docu - mented in any detail (e.g.
Wake
1980
, Azpelicuelta
et al.
1987,
Wilkinson and Nussbaum 1999
).
The obligate aquatic typhlonectids (
Atretochoana
,
Potomotyphlus
, and
Typhlonectes
) have distinctive elongate and narrow trunk vertebrae compared to other caecilians (
Wilkinson and Nussbaum 1997
,
1999
). Additionally, their neural spines are limited to faint ridges or are absent from most vertebrae (
Wilkinson and Nussbaum 1999
). The latter condition is also observed in the similarly elongate trunk vertebrae of
Ymboirana
, in which the ridge is hardly distinguished dorsally. Ventral ridges on the basapophyseal processes constitute another distinctive feature of typhlonectids other than
Chthonerpeton
(
Wilkinson and Nussbaum 1999
)
. These ventral ridges are particularly well - developed in trunk vertebrae of
Ymboirana
.
The
holotype
of
Ymboirana acrux
also preserves several ribs along its vertebral column, but most are badly damaged. Two ribs, preserved near a trunk vertebra located at the middle por - tion of the specimen, remain almost fully preserved. These ribs are relatively straight, and also dorsoventrally expanded at their anteriormost portion, narrowing distally as in the more aquatic typhlonectids (i.e. not
Chthonerpeton
or
Nectocaecilia
; see:
Wilkinson and Nussbaum 1999
). The capitula of these ribs are elongate anteriorly, a feature previously reported as an apomorphy of
Typhlonectes natans
(
Wilkinson and Nussbaum 1999
)
.
Figure 15.
Atlases of four different typhlonectid caecilians.
Ymboirana acrux
gen. et sp. nov.
in anterior (A1) and dorsal (A2) views.
Chthonerpeton indistinctum
in anterior (B1) and dorsal (B2) views.
Potomotyphlus kaupii
in anterior (C1) and dorsal (C2) views.
Nectocaecilia petersii
in anterior (D1) and dorsal (D2) views. See Appendix for abbreviations. Scale bar = 1 mm.
The taxonomic affinities of
Ymboirana acrux
According to the most recent classification proposal of
Gymnophiona
, representatives of the family
Typhlonectidae
can be differentiated from all other caecilians by having fused, sheet - or sac -like embryonic gills (
Wilkinson
et al.
2011
). This minimal diagnosis, although useful for the taxonomy of living groups, cannot be applied to the case of
Ymboirana
given that early life -history stages are unknown.
Wilkinson and Nussbaum (1999)
have provided an extended diagnosis of
Typhlonectidae
and listed 28 features that are considered derived among teresomatan caecilians. However, the conditions of most of these are also unknown in
Ymboirana
(either because they are features of soft anatomy or of unpreserved regions of the skeleton). Of these characters, only the presence of monocusped teeth can be verified reliably in
Ymboirana
, and this feature is known in several non -typhlonectid caecilians too. Thus, unambiguous synapo - morphies of
Typhlonectidae
are not known in
Ymboirana
.
But the typhlonectid affinities of
Ymboirana
are evidenced by features it shares with some, but not all, living representatives of
Typhlonectidae
. For example, the presence of ventral ridges in the basapophyseal processes is reported in all typhlonectids except
Chthonerpeton
, and the presence of elongate and narrow trunk vertebrae and strongly distally tapering ribs are known exclusively in the subgroup of fully aquatic typhlonectids (i.e.
Typhlonectes
,
Potomotyphlus
, and
Atretochoana
; see:
Wilkinson and Nussbaum 1999
). Further, the presence of a strong ven - tral sloping on the parietals, as well as the straightness of the ribs and the lack of posterior flexure, are at least reminiscent of
Chthonerpeton
and
Nectocaecilia
(
Wilkinson and Nussbaum 1999
)
. Taken together these features suggest that
Ymboirana
is more closely related to the fully aquatic typhlonectids than it is to
Chthonerpeton
or
Nectocaecilia
, and is possibly its sister -group, a hypothesis requiring further evaluation through formal phylo - genetic analysis.
Taphonomy
During the collection of the
Ymboirana acrux
holotype
skel - eton, taphonomic procedures, such as the definition of the azi - muthal orientation or the top and the bottom of the fossiliferous assemblage, were not followed (e.g.
Holz and Simões 2005
). Because the fossil was originally considered mining tailings, it was stored near other similar materials in a spoil pile exposed to weathering. Furthermore, there are still no studies focused on the taphonomy of caecilian remains. Therefore, taphonomic in - terpretations are naturally restricted. It is also worth mentioning that because lacustrine deposits routinely preserve remains of allochthonous terrestrial animals, our conclusions remain only tentative and based on indirect evidence. Thus, they should be taken with caution.
Tremembé Formation is interpreted as having been depos - ited in a playa -lake system developed during the Oligocene (
Riccomini 1989
). Lacustrine environments are character - ized by a poorly oxygenated bottom and low energy available for the transport of sediments (e.g.
Wetzel 2001
) and, conse - quently, biological remains. These two factors contribute to the fossilization process in lacustrine systems and both were present in the Tremembé palaeolake (
Riccomini 1989
,
Bergue
et al.
2015
). The other lissamphibian found in Tremembé Formation, a neobatrachian anuran, was described based on damaged and disarticulated remains (Barcelos and Santos 2023). To explain the damaged condition of the specimen, it was proposed that the remains pass through a ‘bloat and float’ stage, which is common for vertebrates fossilized in aquatic environments (e.g.
Syme and Salisbury 2014
).
Despite being damaged and compressed, several elements of the specimen assigned to
Ymboirana acrux
are still articulated, including some vertebrae, but the skull bones and some ver - tebrae at the middle portion of the fossil are scattered (i.e. not aligned with the rest of the vertebral column). In this scenario, it is plausible that the fragmented condition of some elements oc - curred during the ‘bloat and float’ stage, whereas the presence of still articulated elements could be related to the low intensity of transport events between death and deposition of the remains. Additionally, the scattered vertebrae at the central portion of the specimen may be related to reworking made by scavengers or abdominal rupture, one of the most common causes of local - ized disarticulation (see:
McNamara
et al.
2012
, and references therein).
The identification of
Ymboirana acrux
as a representative of
Typhlonectidae
, a group traditionally known by their aquatic or semi -aquatic behaviour, is another piece of evidence corrobor - ating the taphonomic interpretation here proposed. Regarding extant typhlonectids, species of
Chthonerpeton
were usually considered to be less adapted to the aquatic environment, and have been found in wet soil as well as in rivers, small ponds, and flocked marshes (
Taylor 1968
,
Tanner 1971
,
Gudynas
et al.
1988
,
da Silva
et al.
2003
; M.W. personal observation).
Chthonerpeton indistinctum
and
C
.
noctinectes
have been kept in aquaria, sug - gesting that representatives of this genus are indeed well adapted to freshwater environments too (Barrio 1969,
da Silva
et al.
2003
). The remaining extant typhlonectid taxa are more adapted to a fully obligate aquatic lifestyle (e.g.
Wilkinson and Nussbaum 1997
,
Gorzula and Señaris 1998
,
Maciel and Hoogmoed 2011
). This finding also corroborates the hypothesis proposed by Barcelos and Santos (2023), who suggested that the fossil record of am - phibians (including caecilians) in South America may be biased favouring the preservation of aquatic and well -ossified taxa.