NMR solution structures of KAP- 1 PHD finger-bromodomain
Author
Ivanov, Dmitry L.
Author
Scheltema, Amélie H.
text
Zootaxa
2008
2008-09-26
1885
1
60
http://dx.doi.org/10.13018/bmr11036
journal article
10.13018/bmr11036
11755334
5133706
Claviderma compactum
n. sp.
(
Figures 1C
,
7
,
8
,
13A, B
;
Table 5
)
Type material:
Holotype
USNM 1112622
.
Paratypes
:
USNM
; TAMU
;
ZMUM
Le1–172 (type locality); Le1–173 (AII-60 239); Le1–174 (AII-60 239); Le1–175 (AII-60 240); Le1–176 (AII-60 262).
Type
locality:
Argentine
Basin
,
36°12.7'S
,
52°42.7'W
,
2,041 m
(
RV
Atlantis II Cruise
60, station 264,
28.03.1971
)
.
Material examined:
Argentine
Basin
,
687 specimens
(
Table 5
)
.
Diagnosis:
A small
Claviderma
species
<
3 mm
, shank short, fuzzy from long upright sclerites, <1/3 trunk length, appearing nearly same width as trunk, sclerites upright on an anteroventral bulge, dorsal and remaining ventral trunk sclerites adpressed, at 45º to longitudinal body axis; shank clearly demarcated from trunk but not from knob; fringing sclerites not in ring, scarcely extending beyond knob; knob with two lateral groups of long sclerites. Oral shield sclerites in 3 rows. Trunk sclerites straight, narrow, base long, tapered proximally, blade short, narrower than base, with straight tapered sides ending in sharp point.
Etymology:
L.
compactus, -a, -um =
compact.
Description:
External appearance
(
Figs 1C
,
7A–C
):
General
: Small, trunk smooth, sclerites raised on shank giving it fuzzy, wide appearance;
holotype
length
2.7 mm
, anterium
0.1 mm
, trunk 1.6 x
0.6 mm
, shank 0.6 X
0.4 mm
, knob
0.4 mm
, posterium/trunk index 0.37; base of large jaws within hemocoele forming an anteroventral bulge raising sclerites upright (
Fig. 7A–C
, arrows); trunk sclerites arranged from anteroventral to dorsoposterior, diverging from ventral midline rather far posteriorly but not converging dorsally. Oral shield
0.18 mm
in height.
Sclerites
(
Figs 7D, G
,
8
):
General
: Blade very short above waist on anterodorsal trunk, lengthening gradually posteriorly to the shank, thickest medially on base of trunk sclerites, thick for size of sclerites.
Oral shield
(
Fig. 7D
,
8A
): triangular with rounded, angular base, rounded distally, thickest proximally, 65 x 30 x>
3 µm
; of nearly equal size in the 3 rows, largest dorsally.
Dorsal to oral shield
(
Fig. 8B
): oval or with waist, 50 x 25 x
2 µm
.
Anterium
(
Fig. 8C
): asymmetrical and deeply waisted, to 100 x 25 x
3 µm
.
Trunk beneath anteroventral bulge
(
Fig. 8D
):
2 types
, one with deep waist like anterium sclerites, the other ovoid with a short blade, to 110 x 30 x
5 µm
, thickest medially on base.
Ventral trunk posterior to bulge
(
Fig. 8E, F
): like second
type
of sclerites beneath bulge, but larger and with longer blades,>200 x 40 x
7 µm
, thickest medially or distally on base.
Dorsal trunk sclerites from anterior to posterior
(
Fig. 8G, H
): similar to ventral sclerites, width of base nearly the same throughout trunk, base and blade both increasing in length, with blade increasing from 1/7 to 1/4 total length, from 150 x 30 x
4 µm
to 250 x 35 x
8 µm
, thickest medially on base.
Shank
(
Fig. 8I
):
2 types
,
one type
with shape like trunk sclerites but with longer blade up to 1/2 total length, to 280 x 30 x
8 µm
, thickest on blade; the second
type
shorter with a wide quadrate base, base and blade of about equal length, to 220 x 60 x
7 µm
, thickest medially on blade.
Fringe
(
Fig. 8J
): with quadrate base and blade about 3 times length of base, 360 x 50 x
10 µm
, or needle-like, 340 x15 x
8 µm
.
Knob
(
Fig. 8K
): short, straight, tapered or swollen proximally, to 210 x 20 x
4 µm
, or very long and hair-like, to 500 x <
5 µm
.
FIGURE 7.
Claviderma compactum
n. sp.
, Argentine Basin.
A, G.
Holotype (RV Atlantis II Cruise 60 station 264).
B–F.
Paratypes, type locality (C is juvenile).
A, B, C.
Entire; arrows indicate ventral bulge caused by expanded hemocoele around base of jaws.
D.
Oral shield sclerites
in situ
.
E.
Jaw.
F.
Radula
tooth and central plate.
G.
Dorsal mid-trunk sclerites.
Radula
and jaws
: 2 examined. Jaws 520 x
200 µm
(
Fig. 7E
);
radula
teeth
140 µm
long, serrated membrane about
90 µm
long, medial; central plate symmetrical, curved, 30 x
10 µm
(
Fig. 7F
).
Distribution
(
Fig. 25
,
Table 5
): Known from 5 stations in
the Argentine
Basin at just above to within the continental rise (
993–3,343 m
) (
Table 5
).
Remarks:
Cl. compactum
is distinguished from other
Claviderma
species
by: a wide and fuzzy short shank and small size; 3 rows of oral shield sclerites almost equal in size; short, and narrow sclerite blades with straight sides tapering to a narrow proximal end. The anatomy of the relationship between jaws and hemocoele is found in
Scheltema (1981)
.