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<mods:namePart id="556BB9BDC620C617ADE68210DF6C4F61">Burgoon, Jamie L.</mods:namePart>
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@ -91,7 +94,7 @@
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The final assembled dataset consisted of 3417 loci (3348 UCE loci, 61 AHE loci, and eight of the ‘legacy Sanger’ loci). The mean proportion of loci recovered within each sample was 94% (range: 65–97%). The mean length of these assembled loci after trimming was 230.2 base pairs (range: 2–1731) and the mean number of segregating sites was 3.9 (range: 0–30). All raw sequence data have been accessioned on the NCBI Sequence Read Archive (BioProject ID PRJNA1082780; Supporting Information,
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). The mtDNA sequence assembled from these raw reads ranged in length from 124 to 7083 bp in length and were trimmed to the 1117 bp length of
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<emphasis id="B93FC146FF90FFFDFDA0F9DADC40F97A" box="[570,617,1647,1671]" italics="true" pageId="6" pageNumber="7">Cytb</emphasis>
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.
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@ -103,7 +106,7 @@ The final assembled dataset consisted of 3417 loci (3348 UCE loci, 61 AHE loci,
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Results from sNMF analyses indicate that
|
||||
<emphasis id="B93FC146FF90FFFDFDA4F958DC66F8F9" box="[574,591,1773,1796]" italics="true" pageId="6" pageNumber="7">K</emphasis>
|
||||
= 5 is the best fit (
|
||||
<figureCitation id="137001D1FF90FFFDFF11F8BEDEEFF8DE" box="[139,198,1803,1827]" captionStart="Figure 3" captionStartId="7.[113,178,1212,1236]" captionTargetBox="[116,1449,146,1177]" captionTargetId="figure-365@7.[114,1458,144,1179]" captionTargetPageId="7" captionText="Figure 3. A, population structure inferred from the genomic sequence capture data using sNMF. Different colours within the pie charts correspond to admixture coefficients between each of the five lineages; Florida, eastern, central, south Texas, and western. Light grey highlighting represents the geographic distribution of Coluber constrictor. B, results of admixture coefficients from sNMF represented as a bar plot where each bar is a sampled individual.C, PCA of the genomic data demonstrating the differentiation of these phylogeographic lineages. D, SplitsTree network showing population structure and nestedness of these populations." pageId="6" pageNumber="7">Fig. 3</figureCitation>
|
||||
<figureCitation id="137001D1FF90FFFDFF11F8BEDEEFF8DE" box="[139,198,1803,1827]" captionStart="Figure 3" captionStartId="7.[113,178,1212,1236]" captionTargetBox="[116,1449,146,1177]" captionTargetId="figure-365@7.[114,1458,144,1179]" captionTargetPageId="7" captionText="Figure 3. A, population structure inferred from the genomic sequence capture data using sNMF. Different colours within the pie charts correspond to admixture coefficients between each of the five lineages; Florida, eastern, central, south Texas, and western. Light grey highlighting represents the geographic distribution of Coluber constrictor. B, results of admixture coefficients from sNMF represented as a bar plot where each bar is a sampled individual.C, PCA of the genomic data demonstrating the differentiation of these phylogeographic lineages. D, SplitsTree network showing population structure and nestedness of these populations." figureDoi="http://doi.org/10.5281/zenodo.14850040" httpUri="https://zenodo.org/record/14850040/files/figure.png" pageId="6" pageNumber="7">Fig. 3</figureCitation>
|
||||
). These five populations correspond to a population in peninsular
|
||||
<collectingRegion id="498FD3B6FF90FFFDFF69F89EDF69F8BE" box="[243,320,1835,1859]" country="United States of America" name="Florida" pageId="6" pageNumber="7">Florida</collectingRegion>
|
||||
, an eastern population in the temperate deciduous forests, a central population within the
|
||||
|
|
@ -119,9 +122,9 @@ grasslands, a western population isolated across the
|
|||
populations, respectively. The PCA plot was visualized with the
|
||||
<emphasis id="B93FC146FF90FFFDFBC3FF05DA43FF3A" box="[1113,1130,176,199]" italics="true" pageId="6" pageNumber="7">K</emphasis>
|
||||
= 5 population structure inferred from sNMF (
|
||||
<figureCitation id="137001D1FF90FFFDFC5CFF7ADDD6FF1A" box="[966,1023,207,231]" captionStart="Figure 3" captionStartId="7.[113,178,1212,1236]" captionTargetBox="[116,1449,146,1177]" captionTargetId="figure-365@7.[114,1458,144,1179]" captionTargetPageId="7" captionText="Figure 3. A, population structure inferred from the genomic sequence capture data using sNMF. Different colours within the pie charts correspond to admixture coefficients between each of the five lineages; Florida, eastern, central, south Texas, and western. Light grey highlighting represents the geographic distribution of Coluber constrictor. B, results of admixture coefficients from sNMF represented as a bar plot where each bar is a sampled individual.C, PCA of the genomic data demonstrating the differentiation of these phylogeographic lineages. D, SplitsTree network showing population structure and nestedness of these populations." pageId="6" pageNumber="7">Fig. 3</figureCitation>
|
||||
<figureCitation id="137001D1FF90FFFDFC5CFF7ADDD6FF1A" box="[966,1023,207,231]" captionStart="Figure 3" captionStartId="7.[113,178,1212,1236]" captionTargetBox="[116,1449,146,1177]" captionTargetId="figure-365@7.[114,1458,144,1179]" captionTargetPageId="7" captionText="Figure 3. A, population structure inferred from the genomic sequence capture data using sNMF. Different colours within the pie charts correspond to admixture coefficients between each of the five lineages; Florida, eastern, central, south Texas, and western. Light grey highlighting represents the geographic distribution of Coluber constrictor. B, results of admixture coefficients from sNMF represented as a bar plot where each bar is a sampled individual.C, PCA of the genomic data demonstrating the differentiation of these phylogeographic lineages. D, SplitsTree network showing population structure and nestedness of these populations." figureDoi="http://doi.org/10.5281/zenodo.14850040" httpUri="https://zenodo.org/record/14850040/files/figure.png" pageId="6" pageNumber="7">Fig. 3</figureCitation>
|
||||
). This plot shows clear separation of all five lineages, with only some overlap in PC space between the central and western populations. The network inferred from SplitsTree largely identifies these clusters, albeit with some degree of nestedness (
|
||||
<figureCitation id="137001D1FF90FFFDFC26FEF9DA23FE99" box="[956,1034,332,356]" captionStart="Figure 3" captionStartId="7.[113,178,1212,1236]" captionTargetBox="[116,1449,146,1177]" captionTargetId="figure-365@7.[114,1458,144,1179]" captionTargetPageId="7" captionText="Figure 3. A, population structure inferred from the genomic sequence capture data using sNMF. Different colours within the pie charts correspond to admixture coefficients between each of the five lineages; Florida, eastern, central, south Texas, and western. Light grey highlighting represents the geographic distribution of Coluber constrictor. B, results of admixture coefficients from sNMF represented as a bar plot where each bar is a sampled individual.C, PCA of the genomic data demonstrating the differentiation of these phylogeographic lineages. D, SplitsTree network showing population structure and nestedness of these populations." pageId="6" pageNumber="7">Fig. 3D</figureCitation>
|
||||
<figureCitation id="137001D1FF90FFFDFC26FEF9DA23FE99" box="[956,1034,332,356]" captionStart="Figure 3" captionStartId="7.[113,178,1212,1236]" captionTargetBox="[116,1449,146,1177]" captionTargetId="figure-365@7.[114,1458,144,1179]" captionTargetPageId="7" captionText="Figure 3. A, population structure inferred from the genomic sequence capture data using sNMF. Different colours within the pie charts correspond to admixture coefficients between each of the five lineages; Florida, eastern, central, south Texas, and western. Light grey highlighting represents the geographic distribution of Coluber constrictor. B, results of admixture coefficients from sNMF represented as a bar plot where each bar is a sampled individual.C, PCA of the genomic data demonstrating the differentiation of these phylogeographic lineages. D, SplitsTree network showing population structure and nestedness of these populations." figureDoi="http://doi.org/10.5281/zenodo.14850040" httpUri="https://zenodo.org/record/14850040/files/figure.png" pageId="6" pageNumber="7">Fig. 3D</figureCitation>
|
||||
). For example, the western population is nested within the central group, while the eastern population is divided into two clusters.
|
||||
</paragraph>
|
||||
<paragraph id="8BF41D54FF90FFFDFCCFFE1FDA4AFBA9" blockId="6.[825,1475,144,1515]" pageId="6" pageNumber="7">
|
||||
|
|
@ -130,7 +133,7 @@ The SNAPP-based species tree recovered a pectinate phylogeny with divergences as
|
|||
, peninsular
|
||||
<collectingRegion id="498FD3B6FF90FFFDFCA3FE5CDDAFFDFC" box="[825,902,489,513]" country="United States of America" name="Florida" pageId="6" pageNumber="7">Florida</collectingRegion>
|
||||
, eastern, and a sister-relationship between the western and central populations (
|
||||
<figureCitation id="137001D1FF90FFFDFBACFDBDDA44FDDD" box="[1078,1133,520,544]" captionStart="Figure 4" captionStartId="8.[129,194,1087,1111]" captionTargetBox="[132,1470,146,1055]" captionTargetId="figure-397@8.[129,1473,144,1059]" captionTargetPageId="8" captionText="Figure 4. Gene trees and species tree based on sequence capture and by-catch mtDNA data. A, maximum likelihood concatenated tree inferred from phased sequence capture data. B, species’ tree based on SNPs from assembled genomic data inferred using SNAPP. C, divergence dated tree from BEAST based on concatenated genomic sequence data.D, maximum likelihood mtDNA phylogeny for nearly all samples for which sequence capture data was generated.E, dated mtDNA gene tree inferred in BEAST including representative species from the sistergenus Masticophis. In (A) and (D) black circles at nodes represent bootstrap support values ≥95 and in (C), (D), and (E) represent posterior probabilities ≥0.9." pageId="6" pageNumber="7">Fig. 4</figureCitation>
|
||||
<figureCitation id="137001D1FF90FFFDFBACFDBDDA44FDDD" box="[1078,1133,520,544]" captionStart="Figure 4" captionStartId="8.[129,194,1087,1111]" captionTargetBox="[132,1470,146,1055]" captionTargetId="figure-397@8.[129,1473,144,1059]" captionTargetPageId="8" captionText="Figure 4. Gene trees and species tree based on sequence capture and by-catch mtDNA data. A, maximum likelihood concatenated tree inferred from phased sequence capture data. B, species’ tree based on SNPs from assembled genomic data inferred using SNAPP. C, divergence dated tree from BEAST based on concatenated genomic sequence data.D, maximum likelihood mtDNA phylogeny for nearly all samples for which sequence capture data was generated.E, dated mtDNA gene tree inferred in BEAST including representative species from the sistergenus Masticophis. In (A) and (D) black circles at nodes represent bootstrap support values ≥95 and in (C), (D), and (E) represent posterior probabilities ≥0.9." figureDoi="http://doi.org/10.5281/zenodo.14850042" httpUri="https://zenodo.org/record/14850042/files/figure.png" pageId="6" pageNumber="7">Fig. 4</figureCitation>
|
||||
). All relationships within this tree were strongly supported with posterior probabilities ≥0.99. All ESS values from this analysis were>200 as assessed in TRACER v.1.7.1 (
|
||||
<bibRefCitation id="EFDA60A5FF90FFFDFC16FDD3DA75FD83" author="Rambaut A & Drummond AJ & Xie D" box="[908,1116,614,638]" pageId="6" pageNumber="7" pagination="901 - 4" refId="ref15953" refString="Rambaut A, Drummond AJ, Xie D et al. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology 2018; 67: 901 - 4. htps: // doi. org / 10.1093 / sysbio / syy 032" type="journal article" year="2018">
|
||||
Rambaut
|
||||
|
|
@ -144,12 +147,12 @@ populations are sister-taxa, with the south
|
|||
population being the earliest diverging group; again, these relationships are well supported (bootstrap ≥ 90). Within the concatenated tree there are two samples that have ‘ladder-like’ relationships between the eastern and
|
||||
<collectingRegion id="498FD3B6FF90FFFDFB26FCD4DB2EFC84" box="[1212,1287,865,889]" country="United States of America" name="Florida" pageId="6" pageNumber="7">Florida</collectingRegion>
|
||||
lineages, and both samples have high admixture proportions from sNMF (LSU-H2967 and FTB2688; both assigned to the eastern population). The mtDNA gene tree recovered the same phylogenetic relationships as the coalescent-based species tree, with moderate to high support (
|
||||
<figureCitation id="137001D1FF90FFFDFC00FC48DDFAFBE8" box="[922,979,1021,1045]" captionStart="Figure 4" captionStartId="8.[129,194,1087,1111]" captionTargetBox="[132,1470,146,1055]" captionTargetId="figure-397@8.[129,1473,144,1059]" captionTargetPageId="8" captionText="Figure 4. Gene trees and species tree based on sequence capture and by-catch mtDNA data. A, maximum likelihood concatenated tree inferred from phased sequence capture data. B, species’ tree based on SNPs from assembled genomic data inferred using SNAPP. C, divergence dated tree from BEAST based on concatenated genomic sequence data.D, maximum likelihood mtDNA phylogeny for nearly all samples for which sequence capture data was generated.E, dated mtDNA gene tree inferred in BEAST including representative species from the sistergenus Masticophis. In (A) and (D) black circles at nodes represent bootstrap support values ≥95 and in (C), (D), and (E) represent posterior probabilities ≥0.9." pageId="6" pageNumber="7">Fig. 4</figureCitation>
|
||||
<figureCitation id="137001D1FF90FFFDFC00FC48DDFAFBE8" box="[922,979,1021,1045]" captionStart="Figure 4" captionStartId="8.[129,194,1087,1111]" captionTargetBox="[132,1470,146,1055]" captionTargetId="figure-397@8.[129,1473,144,1059]" captionTargetPageId="8" captionText="Figure 4. Gene trees and species tree based on sequence capture and by-catch mtDNA data. A, maximum likelihood concatenated tree inferred from phased sequence capture data. B, species’ tree based on SNPs from assembled genomic data inferred using SNAPP. C, divergence dated tree from BEAST based on concatenated genomic sequence data.D, maximum likelihood mtDNA phylogeny for nearly all samples for which sequence capture data was generated.E, dated mtDNA gene tree inferred in BEAST including representative species from the sistergenus Masticophis. In (A) and (D) black circles at nodes represent bootstrap support values ≥95 and in (C), (D), and (E) represent posterior probabilities ≥0.9." figureDoi="http://doi.org/10.5281/zenodo.14850042" httpUri="https://zenodo.org/record/14850042/files/figure.png" pageId="6" pageNumber="7">Fig. 4</figureCitation>
|
||||
). One sample (LSU H-2967) clustered with the eastern lineage samples using genomic data but mtDNA originated from the eastern lineage.
|
||||
</paragraph>
|
||||
<paragraph id="8BF41D54FF90FFFDFCCFFBEEDAC7FA16" blockId="6.[825,1475,144,1515]" pageId="6" pageNumber="7">
|
||||
Divergence times were estimated based on both a single locus mtDNA dataset and the concatenated genomic data (
|
||||
<figureCitation id="137001D1FF90FFFDFAEFFBCEDB98FB6E" box="[1397,1457,1147,1171]" captionStart="Figure 4" captionStartId="8.[129,194,1087,1111]" captionTargetBox="[132,1470,146,1055]" captionTargetId="figure-397@8.[129,1473,144,1059]" captionTargetPageId="8" captionText="Figure 4. Gene trees and species tree based on sequence capture and by-catch mtDNA data. A, maximum likelihood concatenated tree inferred from phased sequence capture data. B, species’ tree based on SNPs from assembled genomic data inferred using SNAPP. C, divergence dated tree from BEAST based on concatenated genomic sequence data.D, maximum likelihood mtDNA phylogeny for nearly all samples for which sequence capture data was generated.E, dated mtDNA gene tree inferred in BEAST including representative species from the sistergenus Masticophis. In (A) and (D) black circles at nodes represent bootstrap support values ≥95 and in (C), (D), and (E) represent posterior probabilities ≥0.9." pageId="6" pageNumber="7">Fig. 4</figureCitation>
|
||||
<figureCitation id="137001D1FF90FFFDFAEFFBCEDB98FB6E" box="[1397,1457,1147,1171]" captionStart="Figure 4" captionStartId="8.[129,194,1087,1111]" captionTargetBox="[132,1470,146,1055]" captionTargetId="figure-397@8.[129,1473,144,1059]" captionTargetPageId="8" captionText="Figure 4. Gene trees and species tree based on sequence capture and by-catch mtDNA data. A, maximum likelihood concatenated tree inferred from phased sequence capture data. B, species’ tree based on SNPs from assembled genomic data inferred using SNAPP. C, divergence dated tree from BEAST based on concatenated genomic sequence data.D, maximum likelihood mtDNA phylogeny for nearly all samples for which sequence capture data was generated.E, dated mtDNA gene tree inferred in BEAST including representative species from the sistergenus Masticophis. In (A) and (D) black circles at nodes represent bootstrap support values ≥95 and in (C), (D), and (E) represent posterior probabilities ≥0.9." figureDoi="http://doi.org/10.5281/zenodo.14850042" httpUri="https://zenodo.org/record/14850042/files/figure.png" pageId="6" pageNumber="7">Fig. 4</figureCitation>
|
||||
). The mtDNA analysis suggests that
|
||||
<taxonomicName id="4C4B66D7FF90FFFDFB3DFB2FDADDFB4F" box="[1191,1268,1178,1202]" class="Squamata" family="Colubridae" genus="Coluber" kingdom="Animalia" pageId="6" pageNumber="7" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B93FC146FF90FFFDFB3DFB2FDADDFB4F" box="[1191,1268,1178,1202]" italics="true" pageId="6" pageNumber="7">Coluber</emphasis>
|
||||
|
|
@ -169,7 +172,7 @@ lineage divergence, demonstrating that these lineages began diversifying during
|
|||
<emphasis id="B93FC146FF90FFFDFC6BFAE3DA17FA93" box="[1009,1086,1366,1390]" italics="true" pageId="6" pageNumber="7">Coluber</emphasis>
|
||||
</taxonomicName>
|
||||
began diversifying in the Mid to Late Miocene with an estimated crown age of 10.7 Mya (8.7–12.8 Mya;
|
||||
<figureCitation id="137001D1FF90FFFDFCE3FA21DD9EFA50" box="[889,951,1428,1453]" captionStart="Figure 4" captionStartId="8.[129,194,1087,1111]" captionTargetBox="[132,1470,146,1055]" captionTargetId="figure-397@8.[129,1473,144,1059]" captionTargetPageId="8" captionText="Figure 4. Gene trees and species tree based on sequence capture and by-catch mtDNA data. A, maximum likelihood concatenated tree inferred from phased sequence capture data. B, species’ tree based on SNPs from assembled genomic data inferred using SNAPP. C, divergence dated tree from BEAST based on concatenated genomic sequence data.D, maximum likelihood mtDNA phylogeny for nearly all samples for which sequence capture data was generated.E, dated mtDNA gene tree inferred in BEAST including representative species from the sistergenus Masticophis. In (A) and (D) black circles at nodes represent bootstrap support values ≥95 and in (C), (D), and (E) represent posterior probabilities ≥0.9." pageId="6" pageNumber="7">Fig. 4</figureCitation>
|
||||
<figureCitation id="137001D1FF90FFFDFCE3FA21DD9EFA50" box="[889,951,1428,1453]" captionStart="Figure 4" captionStartId="8.[129,194,1087,1111]" captionTargetBox="[132,1470,146,1055]" captionTargetId="figure-397@8.[129,1473,144,1059]" captionTargetPageId="8" captionText="Figure 4. Gene trees and species tree based on sequence capture and by-catch mtDNA data. A, maximum likelihood concatenated tree inferred from phased sequence capture data. B, species’ tree based on SNPs from assembled genomic data inferred using SNAPP. C, divergence dated tree from BEAST based on concatenated genomic sequence data.D, maximum likelihood mtDNA phylogeny for nearly all samples for which sequence capture data was generated.E, dated mtDNA gene tree inferred in BEAST including representative species from the sistergenus Masticophis. In (A) and (D) black circles at nodes represent bootstrap support values ≥95 and in (C), (D), and (E) represent posterior probabilities ≥0.9." figureDoi="http://doi.org/10.5281/zenodo.14850042" httpUri="https://zenodo.org/record/14850042/files/figure.png" pageId="6" pageNumber="7">Fig. 4</figureCitation>
|
||||
). The youngest divergence times between these phylogeographic lineages occurred 6.2 Mya (3.3–8.9 Mya) between the western and central populations.
|
||||
</paragraph>
|
||||
<paragraph id="8BF41D54FF90FFFDFCCEF9BEDB81F9D8" blockId="6.[852,1448,1547,1573]" box="[852,1448,1547,1573]" pageId="6" pageNumber="7">
|
||||
|
|
@ -180,14 +183,14 @@ began diversifying in the Mid to Late Miocene with an estimated crown age of 10.
|
|||
The genomic data strongly supports the model with recent divergence without migration (Is), with a probability of ~1.0. Parameter estimates from this model suggest that lineage divergence of all populations occurred ~33 kya (25–43 kya 95% confidence interval) with no gene flow. These estimates also suggest small effective population sizes for the western and central populations and larger population sizes for the eastern and
|
||||
<collectingRegion id="498FD3B6FF91FFFCFFEBFA7EDE95FA1E" box="[113,188,1483,1507]" country="United States of America" name="Florida" pageId="7" pageNumber="8">Florida</collectingRegion>
|
||||
populations, with a much stronger population size increase in the latter two. The timing of population size change also shows a more recent demographic change for the western population. These parameter estimates are available in the Supporting Information (Table S4;
|
||||
<figureCitation id="137001D1FF91FFFCFEF3F9FDDF99F99D" box="[361,432,1608,1632]" captionStart="Figure 2" captionStartId="4.[129,194,1129,1153]" captionTargetBox="[131,1470,146,1097]" captionTargetId="figure-479@4.[129,1473,144,1100]" captionTargetPageId="4" captionText="Figure 2. The six demographic models tested in PipeMaster using supervised machine learning. The four isolation-with-migration (IMD) models differ in topology or whether migration was restricted to geographically adjacent lineages only. IS represents a recent isolation without migration model." pageId="7" pageNumber="8">Fig. S2</figureCitation>
|
||||
<figureCitation id="137001D1FF91FFFCFEF3F9FDDF99F99D" box="[361,432,1608,1632]" captionStart="Figure 2" captionStartId="4.[129,194,1129,1153]" captionTargetBox="[131,1470,146,1097]" captionTargetId="figure-479@4.[129,1473,144,1100]" captionTargetPageId="4" captionText="Figure 2. The six demographic models tested in PipeMaster using supervised machine learning. The four isolation-with-migration (IMD) models differ in topology or whether migration was restricted to geographically adjacent lineages only. IS represents a recent isolation without migration model." figureDoi="http://doi.org/10.5281/zenodo.14850038" httpUri="https://zenodo.org/record/14850038/files/figure.png" pageId="7" pageNumber="8">Fig. S2</figureCitation>
|
||||
). By contrast, the mtDNA data support one of the ancient IMD models, with the model where the western population is sister to the central population and the eastern population is sister to the
|
||||
<collectingRegion id="498FD3B6FF91FFFCFE5FF913DC39F943" box="[453,528,1702,1726]" country="United States of America" name="Florida" pageId="7" pageNumber="8">Florida</collectingRegion>
|
||||
population, having the highest probability (
|
||||
<emphasis id="B93FC146FF91FFFCFED8F973DF79F920" box="[322,336,1734,1757]" italics="true" pageId="7" pageNumber="8">P</emphasis>
|
||||
= 0.43).
|
||||
</paragraph>
|
||||
<caption id="DF344DDCFF91FFFCFFEBFB09DD91FAB9" pageId="7" pageNumber="8" startId="7.[113,178,1212,1236]" targetBox="[116,1449,146,1177]" targetPageId="7" targetType="figure">
|
||||
<caption id="DF344DDCFF91FFFCFFEBFB09DD91FAB9" ID-DOI="http://doi.org/10.5281/zenodo.14850040" ID-Zenodo-Dep="14850040" httpUri="https://zenodo.org/record/14850040/files/figure.png" pageId="7" pageNumber="8" startId="7.[113,178,1212,1236]" targetBox="[116,1449,146,1177]" targetPageId="7" targetType="figure">
|
||||
<paragraph id="8BF41D54FF91FFFCFFEBFB09DD91FAB9" blockId="7.[113,1438,1212,1348]" pageId="7" pageNumber="8">
|
||||
<emphasis id="B93FC146FF91FFFCFFEBFB09DEE0FB29" bold="true" box="[113,201,1212,1236]" pageId="7" pageNumber="8">Figure 3.</emphasis>
|
||||
A, population structure inferred from the genomic sequence capture data using sNMF. Different colours within the pie charts correspond to admixture coefficients between each of the five lineages; Florida, eastern, central, south Texas, and western. Light grey highlighting represents the geographic distribution of
|
||||
|
|
@ -241,12 +244,12 @@ Each lineage had a unique, best-fit combination of feature class and regularizat
|
|||
; 0.99 for
|
||||
<collectingRegion id="498FD3B6FF91FFFCFCCAF8F6DDB2F8A6" box="[848,923,1859,1883]" country="United States of America" name="Florida" pageId="7" pageNumber="8">Florida</collectingRegion>
|
||||
population; 0.96 for eastern; 0.93 for central; 0.96 for western). All ENMs predict the geographic distribution of the focal lineage with little overlap in predicted geographic distribution between geographically adjacent populations (
|
||||
<figureCitation id="137001D1FF91FFFCFAF3F814DB8BF844" box="[1385,1442,1953,1977]" captionStart="Figure 5" captionStartId="9.[114,179,1008,1032]" captionTargetBox="[117,1456,145,978]" captionTargetId="figure-517@9.[114,1458,144,980]" captionTargetPageId="9" captionText="Figure 5. Ecological niche models constructed for each of the five phylogeographic lineages based on current climate and paleo-climate models from ~21 kya. All panels are labelled with their corresponding lineage and if they correspond to late Pleistocene projections. Regions shaded in green are those that were inferred to have higher environmental suitability for each lineage based on locality data used in the ENMs." pageId="7" pageNumber="8">Fig. 5</figureCitation>
|
||||
<figureCitation id="137001D1FF91FFFCFAF3F814DB8BF844" box="[1385,1442,1953,1977]" captionStart="Figure 5" captionStartId="9.[114,179,1008,1032]" captionTargetBox="[117,1456,145,978]" captionTargetId="figure-517@9.[114,1458,144,980]" captionTargetPageId="9" captionText="Figure 5. Ecological niche models constructed for each of the five phylogeographic lineages based on current climate and paleo-climate models from ~21 kya. All panels are labelled with their corresponding lineage and if they correspond to late Pleistocene projections. Regions shaded in green are those that were inferred to have higher environmental suitability for each lineage based on locality data used in the ENMs." figureDoi="http://doi.org/10.5281/zenodo.14850044" httpUri="https://zenodo.org/record/14850044/files/figure.png" pageId="7" pageNumber="8">Fig. 5</figureCitation>
|
||||
). ENMs projected on to the Mid-Pleistocene suggests that all five lineages would have had reduced geographic distributions into refugia that were allopatric from one another (
|
||||
<figureCitation id="137001D1FF9EFFF3FDCDFAE7DCA6FA97" box="[599,655,1362,1386]" captionStart="Figure 5" captionStartId="9.[114,179,1008,1032]" captionTargetBox="[117,1456,145,978]" captionTargetId="figure-517@9.[114,1458,144,980]" captionTargetPageId="9" captionText="Figure 5. Ecological niche models constructed for each of the five phylogeographic lineages based on current climate and paleo-climate models from ~21 kya. All panels are labelled with their corresponding lineage and if they correspond to late Pleistocene projections. Regions shaded in green are those that were inferred to have higher environmental suitability for each lineage based on locality data used in the ENMs." pageId="8" pageNumber="9">Fig. 5</figureCitation>
|
||||
<figureCitation id="137001D1FF9EFFF3FDCDFAE7DCA6FA97" box="[599,655,1362,1386]" captionStart="Figure 5" captionStartId="9.[114,179,1008,1032]" captionTargetBox="[117,1456,145,978]" captionTargetId="figure-517@9.[114,1458,144,980]" captionTargetPageId="9" captionText="Figure 5. Ecological niche models constructed for each of the five phylogeographic lineages based on current climate and paleo-climate models from ~21 kya. All panels are labelled with their corresponding lineage and if they correspond to late Pleistocene projections. Regions shaded in green are those that were inferred to have higher environmental suitability for each lineage based on locality data used in the ENMs." figureDoi="http://doi.org/10.5281/zenodo.14850044" httpUri="https://zenodo.org/record/14850044/files/figure.png" pageId="8" pageNumber="9">Fig. 5</figureCitation>
|
||||
).
|
||||
</paragraph>
|
||||
<caption id="DF344DDCFF9EFFF3FF1BFB8ADF04FB19" pageId="8" pageNumber="9" startId="8.[129,194,1087,1111]" targetBox="[132,1470,146,1055]" targetPageId="8" targetType="figure">
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<caption id="DF344DDCFF9EFFF3FF1BFB8ADF04FB19" ID-DOI="http://doi.org/10.5281/zenodo.14850042" ID-Zenodo-Dep="14850042" httpUri="https://zenodo.org/record/14850042/files/figure.png" pageId="8" pageNumber="9" startId="8.[129,194,1087,1111]" targetBox="[132,1470,146,1055]" targetPageId="8" targetType="figure">
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<paragraph id="8BF41D54FF9EFFF3FF1BFB8ADF04FB19" blockId="8.[129,1470,1087,1252]" pageId="8" pageNumber="9">
|
||||
<emphasis id="B93FC146FF9EFFF3FF1BFB8ADEF1FBAA" bold="true" box="[129,216,1087,1111]" pageId="8" pageNumber="9">Figure 4.</emphasis>
|
||||
Gene trees and species tree based on sequence capture and by-catch mtDNA data. A, maximum likelihood concatenated tree inferred from phased sequence capture data. B, species’ tree based on SNPs from assembled genomic data inferred using SNAPP. C, divergence dated tree from BEAST based on concatenated genomic sequence data. D, maximum likelihood mtDNA phylogeny for nearly all samples for which sequence capture data was generated. E, dated mtDNA gene tree inferred in BEAST including representative species from the sistergenus
|
||||
|
|
@ -265,13 +268,13 @@ Sexual dimorphism was found in tail length, head width and length, eye diameter,
|
|||
-values <0.05). Principal component analyses are significant (
|
||||
<emphasis id="B93FC146FF9EFFF3FDEEFA45DCABF9FA" box="[628,642,1520,1543]" italics="true" pageId="8" pageNumber="9">P</emphasis>
|
||||
-value = 0 in both cases); however, there is no clear pattern of separation between lineages (
|
||||
<figureCitation id="137001D1FF9EFFF3FEBEF998DF75F9B8" box="[292,348,1581,1605]" captionStart="Figure 6" captionStartId="10.[129,194,1908,1932]" captionTargetBox="[257,1343,152,1875]" captionTargetId="figure-7@10.[254,1346,149,1877]" captionTargetPageId="10" captionText="Figure 6. Morphological differentiation between phylogeographic lineages in Coluber constrictor. A, B, PCA of morphological variables; A, males; B, females. C, D, are boxplots of each linear measurement showing the differentiation of each of these traits between the five lineages:C, represents males; D, females. In panels (C) and (D), pairwise comparisons significant at an adjusted P <.05 with a Tukey’s honest significant difference test are indicated by letters, where shared letters indicate that pair-wise comparisons are significantly different." pageId="8" pageNumber="9">Fig. 6</figureCitation>
|
||||
<figureCitation id="137001D1FF9EFFF3FEBEF998DF75F9B8" box="[292,348,1581,1605]" captionStart="Figure 6" captionStartId="10.[129,194,1908,1932]" captionTargetBox="[257,1343,152,1875]" captionTargetId="figure-7@10.[254,1346,149,1877]" captionTargetPageId="10" captionText="Figure 6. Morphological differentiation between phylogeographic lineages in Coluber constrictor. A, B, PCA of morphological variables; A, males; B, females. C, D, are boxplots of each linear measurement showing the differentiation of each of these traits between the five lineages:C, represents males; D, females. In panels (C) and (D), pairwise comparisons significant at an adjusted P <.05 with a Tukey’s honest significant difference test are indicated by letters, where shared letters indicate that pair-wise comparisons are significantly different." figureDoi="http://doi.org/10.5281/zenodo.14850046" httpUri="https://zenodo.org/record/14850046/files/figure.png" pageId="8" pageNumber="9">Fig. 6</figureCitation>
|
||||
). PC1 accounts for 39.1% of variation and PC2 for 19.7% variation in males, with the highest loadings contributed to head width, length, and eye diameter in PC1 and SVL in PC2. Within females, PC1 accounts for 41.0% of the total variation and PC2 for 16.7%, with the highest loadings contributed to head width, head length, rostral length, prefrontal width, and internasal width on PC1. Using PERMANOVA tests, males of the eastern and
|
||||
<collectingRegion id="498FD3B6FF9EFFF3FEBDF8BCDF5BF8DC" box="[295,370,1801,1825]" country="United States of America" name="Florida" pageId="8" pageNumber="9">Florida</collectingRegion>
|
||||
lineages are significantly different from the other three lineages but not distinct from one another in morphology; similarly, the central, western, and south
|
||||
<collectingRegion id="498FD3B6FF9EFFF3FD32F8FDDCCBF8A2" box="[680,738,1864,1887]" country="United States of America" name="Texas" pageId="8" pageNumber="9">Texas</collectingRegion>
|
||||
lineages are indistinguishable (
|
||||
<tableCitation id="C6C928EFFF9EFFF3FE04F8D2DFC1F882" box="[414,488,1895,1919]" captionStart="Table 1" captionStartId="11.[113,168,143,167]" captionTargetPageId="11" captionText="Table 1. Morphological differences from PERMANOVA." pageId="8" pageNumber="9">Table 1</tableCitation>
|
||||
<tableCitation id="C6C928EFFF9EFFF3FE04F8D2DFC1F882" box="[414,488,1895,1919]" captionStart="Table 1" captionStartId="11.[113,168,143,167]" captionTargetPageId="11" captionText="Table 1. Morphological differences from PERMANOVA." httpUri="http://table.plazi.org/id/DF344DDCFF9DFFF0FFEBFF3ADCB9FF5A" pageId="8" pageNumber="9" tableUuid="DF344DDCFF9DFFF0FFEBFF3ADCB9FF5A">Table 1</tableCitation>
|
||||
). PERMANOVA tests demonstrate that with morphological data from females, the eastern lineage is distinct from the western and south
|
||||
<collectingRegion id="498FD3B6FF9EFFF3FDEAF813DC83F840" box="[624,682,1958,1981]" country="United States of America" name="Texas" pageId="8" pageNumber="9">Texas</collectingRegion>
|
||||
lineages, and the
|
||||
|
|
@ -279,7 +282,7 @@ lineages, and the
|
|||
lineage is distinct from the south
|
||||
<collectingRegion id="498FD3B6FF9EFFF3FADCFAA1DBA9FAD6" box="[1350,1408,1300,1323]" country="United States of America" name="Texas" pageId="8" pageNumber="9">Texas</collectingRegion>
|
||||
clade, whereas all other comparisons were not significant (
|
||||
<tableCitation id="C6C928EFFF9EFFF3FAF9FA86DB98FAB6" box="[1379,1457,1331,1355]" captionStart="Table 1" captionStartId="11.[113,168,143,167]" captionTargetPageId="11" captionText="Table 1. Morphological differences from PERMANOVA." pageId="8" pageNumber="9">Table 1</tableCitation>
|
||||
<tableCitation id="C6C928EFFF9EFFF3FAF9FA86DB98FAB6" box="[1379,1457,1331,1355]" captionStart="Table 1" captionStartId="11.[113,168,143,167]" captionTargetPageId="11" captionText="Table 1. Morphological differences from PERMANOVA." httpUri="http://table.plazi.org/id/DF344DDCFF9DFFF0FFEBFF3ADCB9FF5A" pageId="8" pageNumber="9" tableUuid="DF344DDCFF9DFFF0FFEBFF3ADCB9FF5A">Table 1</tableCitation>
|
||||
). Discriminant function analysis with cross-validation demonstrates that these lineages can be differentiated from one another with an accuracy of 56.2% in males and 47.5% in females. In all attempts to classify specimens, there are misclassifications between all lineages using both morphological datasets.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
|
|
@ -302,7 +305,7 @@ Burbrink
|
|||
<collectingRegion id="498FD3B6FF9FFFF2FD12FA99DCD3FAB9" box="[648,762,1324,1348]" country="United States of America" name="Mississippi" pageId="9" pageNumber="10">Mississippi</collectingRegion>
|
||||
River, and several adjacent population pairs have diverged in environmental niche. Lastly, hindcast ENMs suggest that all lineages were distributed allopatrically in the Mid-Pleistocene.
|
||||
</paragraph>
|
||||
<caption id="DF344DDCFF9FFFF2FFE8FC45DB6CFBBD" pageId="9" pageNumber="10" startId="9.[114,179,1008,1032]" targetBox="[117,1456,145,978]" targetPageId="9" targetType="figure">
|
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<caption id="DF344DDCFF9FFFF2FFE8FC45DB6CFBBD" ID-DOI="http://doi.org/10.5281/zenodo.14850044" ID-Zenodo-Dep="14850044" httpUri="https://zenodo.org/record/14850044/files/figure.png" pageId="9" pageNumber="10" startId="9.[114,179,1008,1032]" targetBox="[117,1456,145,978]" targetPageId="9" targetType="figure">
|
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<paragraph id="8BF41D54FF9FFFF2FFE8FC45DB6CFBBD" blockId="9.[113,1457,1008,1089]" pageId="9" pageNumber="10">
|
||||
<emphasis id="B93FC146FF9FFFF2FFE8FC45DEE0FBF4" bold="true" box="[114,201,1008,1033]" pageId="9" pageNumber="10">Figure 5.</emphasis>
|
||||
Ecological niche models constructed for each of the five phylogeographic lineages based on current climate and paleo-climate models from ~21 kya. All panels are labelled with their corresponding lineage and if they correspond to late Pleistocene projections. Regions shaded in green are those that were inferred to have higher environmental suitability for each lineage based on locality data used in the ENMs.
|
||||
|
|
@ -330,7 +333,7 @@ McCormack
|
|||
</paragraph>
|
||||
<paragraph id="8BF41D54FF9FFFF2FCDFFBC5DB7CF885" blockId="9.[810,1460,1136,2007]" pageId="9" pageNumber="10">
|
||||
Much of this uncertainty could stem from several historical processes. For example, the rapid diversification of these lineages may have resulted in difficulty discerning relationships and, therefore, a soft polytomy may be the best representation of historical relationships of these lineages. However, this may be unlikely given the inferred relationships based on multispecies coalescent, concatenated, and mtDNA tree-based analyses (
|
||||
<figureCitation id="137001D1FF9FFFF2FA17FA99DD1EFA99" captionStart="Figure 3" captionStartId="7.[113,178,1212,1236]" captionTargetBox="[116,1449,146,1177]" captionTargetId="figure-365@7.[114,1458,144,1179]" captionTargetPageId="7" captionText="Figure 3. A, population structure inferred from the genomic sequence capture data using sNMF. Different colours within the pie charts correspond to admixture coefficients between each of the five lineages; Florida, eastern, central, south Texas, and western. Light grey highlighting represents the geographic distribution of Coluber constrictor. B, results of admixture coefficients from sNMF represented as a bar plot where each bar is a sampled individual.C, PCA of the genomic data demonstrating the differentiation of these phylogeographic lineages. D, SplitsTree network showing population structure and nestedness of these populations." pageId="9" pageNumber="10">Fig. 3</figureCitation>
|
||||
<figureCitation id="137001D1FF9FFFF2FA17FA99DD1EFA99" captionStart="Figure 3" captionStartId="7.[113,178,1212,1236]" captionTargetBox="[116,1449,146,1177]" captionTargetId="figure-365@7.[114,1458,144,1179]" captionTargetPageId="7" captionText="Figure 3. A, population structure inferred from the genomic sequence capture data using sNMF. Different colours within the pie charts correspond to admixture coefficients between each of the five lineages; Florida, eastern, central, south Texas, and western. Light grey highlighting represents the geographic distribution of Coluber constrictor. B, results of admixture coefficients from sNMF represented as a bar plot where each bar is a sampled individual.C, PCA of the genomic data demonstrating the differentiation of these phylogeographic lineages. D, SplitsTree network showing population structure and nestedness of these populations." figureDoi="http://doi.org/10.5281/zenodo.14850040" httpUri="https://zenodo.org/record/14850040/files/figure.png" pageId="9" pageNumber="10">Fig. 3</figureCitation>
|
||||
). It is well known that rapid and successive lineage divergence can result in high gene tree heterogeneity and this has been shown to be widespread in many taxa (
|
||||
<bibRefCitation id="EFDA60A5FF9FFFF2FBE4FA3FDB6AFA5F" author="Linkem CW & Minin VN & Leache AD" box="[1150,1347,1418,1442]" pageId="9" pageNumber="10" pagination="465 - 77" refId="ref14469" refString="Linkem CW, Minin VN, Leache AD. Detecting the anomaly zone in species trees and evidence for a misleading signal in higher-level skink phylogeny (Squamata: Scincidae). Systematic Biology 2016; 65: 465 - 77. htps: // doi. org / 10.1093 / sysbio / syw 001" type="journal article" year="2016">
|
||||
Linkem
|
||||
|
|
@ -376,7 +379,7 @@ Pernetta
|
|||
</bibRefCitation>
|
||||
), have suggested that male-biased dispersal is common within snakes. While this could explain the observed pattern here, it is expected that we would find a signal of gene flow in the nuclear genome, which is not the case in our demographic modelling. Additionally, when estimating divergence times based on the concatenated genomic data, we do not find the expected shallow divergence times.
|
||||
</paragraph>
|
||||
<caption id="DF344DDCFF9CFFF1FF1BF8C1DAC2F81D" pageId="10" pageNumber="11" startId="10.[129,194,1908,1932]" targetBox="[257,1343,152,1875]" targetPageId="10" targetType="figure">
|
||||
<caption id="DF344DDCFF9CFFF1FF1BF8C1DAC2F81D" ID-DOI="http://doi.org/10.5281/zenodo.14850046" ID-Zenodo-Dep="14850046" httpUri="https://zenodo.org/record/14850046/files/figure.png" pageId="10" pageNumber="11" startId="10.[129,194,1908,1932]" targetBox="[257,1343,152,1875]" targetPageId="10" targetType="figure">
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<paragraph id="8BF41D54FF9CFFF1FF1BF8C1DAC2F81D" blockId="10.[129,1468,1908,2016]" pageId="10" pageNumber="11">
|
||||
<emphasis id="B93FC146FF9CFFF1FF1BF8C1DEF1F871" bold="true" box="[129,216,1908,1932]" pageId="10" pageNumber="11">Figure 6.</emphasis>
|
||||
Morphological differentiation between phylogeographic lineages in
|
||||
|
|
@ -388,7 +391,7 @@ Morphological differentiation between phylogeographic lineages in
|
|||
<.05 with a Tukey’s honest significant difference test are indicated by letters, where shared letters indicate that pair-wise comparisons are significantly different.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<caption id="DF344DDCFF9DFFF0FFEBFF3ADCB9FF5A" box="[113,656,142,167]" pageId="11" pageNumber="12" startId="11.[113,168,143,167]" targetBox="[113,762,188,972]" targetIsTable="true" targetPageId="11" targetType="table">
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<caption id="DF344DDCFF9DFFF0FFEBFF3ADCB9FF5A" ID-Table-UUID="DF344DDCFF9DFFF0FFEBFF3ADCB9FF5A" box="[113,656,142,167]" httpUri="http://table.plazi.org/id/DF344DDCFF9DFFF0FFEBFF3ADCB9FF5A" pageId="11" pageNumber="12" startId="11.[113,168,143,167]" targetBox="[113,762,188,972]" targetIsTable="true" targetPageId="11" targetType="table">
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<paragraph id="8BF41D54FF9DFFF0FFEBFF3ADCB9FF5A" blockId="11.[113,656,142,167]" box="[113,656,142,167]" pageId="11" pageNumber="12">
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||||
<emphasis id="B93FC146FF9DFFF0FFEBFF3ADEE9FF5B" bold="true" box="[113,192,142,167]" pageId="11" pageNumber="12">Table 1.</emphasis>
|
||||
Morphological differences from PERMANOVA.
|
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|
|
|
|||
1286
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1286
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|
||||
<emphasis id="F0C36D3A36323C5F60EFFCC4FAC8FCA4" bold="true" box="[963,1306,782,809]" pageId="1">
|
||||
<taxonomicName id="05B7CAAB36323C5F60EFFCC4FB18FCA4" authority="SO et al." authorityName="SO" authorityYear="2025" box="[963,1226,782,809]" class="Amphibia" family="Branchiosauridae" genus="Kermitops" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="species" species="gratus" status="sp. nov.">
|
||||
<emphasis id="F0C36D3A36323C5F60EFFCC4FBBDFCA4" bold="true" box="[963,1135,783,809]" italics="true" pageId="1">Kermitops gratus</emphasis>
|
||||
SO
|
||||
<emphasis id="F0C36D3A36323C5F67B7FCC4FB18FCA4" bold="true" box="[1179,1226,782,809]" italics="true" pageId="1">et al.</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="EBF0D04136323C5F67E2FCC4FAC8FCA4" box="[1230,1306,783,809]" pageId="1" rank="species">sp.nov.</taxonomicNameLabel>
|
||||
</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="C208B12836323C5F6006FC84FB84FC0B" blockId="1.[810,1459,847,902]" pageId="1">
|
||||
<emphasis id="F0C36D3A36323C5F6006FC84FC0EFCEA" box="[810,988,847,871]" italics="true" pageId="1">Zoobank LSID:</emphasis>
|
||||
<uri id="B626BD2A36323C5F60D4FC84FB83FC0B" pageId="1">
|
||||
urn:lsid:zoobank.org:act:
|
||||
<uuid id="B6118BFD36323C5F67D4FC84FB83FC0B" pageId="1">039A8C39-E226- 4C54-9357-CB2161A07551</uuid>
|
||||
</uri>
|
||||
.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
<subSubSection id="8AADE2A336323C5C6006FC63FD02FBF6" lastPageId="2" pageId="1" type="materials_examined">
|
||||
<paragraph id="C208B12836323C5F6006FC63FBD8FBB0" blockId="1.[810,1459,936,1085]" pageId="1">
|
||||
<materialsCitation id="72DFBB7536323C5F6006FC63FBD8FBB0" collectionCode="USNM" pageId="1" specimenCode="USNM 407585" specimenCount="1" typeStatus="holotype">
|
||||
<emphasis id="F0C36D3A36323C5F6006FC63FC58FC4D" box="[810,906,936,960]" italics="true" pageId="1">
|
||||
<typeStatus id="1D0C0F8A36323C5F6006FC63FC57FC4D" box="[810,901,936,960]" pageId="1" type="holotype">Holotype</typeStatus>
|
||||
:
|
||||
</emphasis>
|
||||
<specimenCode id="9211195336323C5F60A3FC63FBFCFC4D" box="[911,1070,936,960]" collectionCode="USNM" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:34871" lsid="urn:lsid:biocol.org:col:34871" name="Smithsonian Institution, National Museum of Natural History" pageId="1" type="Museum">USNM 407585</specimenCode>
|
||||
(
|
||||
<figureCitation id="5A8CADAD36323C5F6711FC63FB41FC4D" box="[1085,1171,936,960]" captionStart-0="Figure 1" captionStart-1="Figure 2" captionStart-2="Figure 3" captionStartId-0="2.[129,194,926,950]" captionStartId-1="3.[113,178,1149,1173]" captionStartId-2="4.[130,195,1015,1039]" captionTargetBox-0="[129,1473,145,896]" captionTargetBox-1="[118,1455,147,1118]" captionTargetBox-2="[132,1470,147,984]" captionTargetId-0="figure-602@2.[128,1475,144,898]" captionTargetId-1="figure-475@3.[114,1458,144,1121]" captionTargetId-2="figure-508@4.[129,1473,144,987]" captionTargetPageId-0="2" captionTargetPageId-1="3" captionTargetPageId-2="4" captionText-0="Figure 1. Photograph (A) and interpretive illustration (B) of Kermitops gratus, gen. et sp.nov.(USNM PAL 407585) in dorsal view." captionText-1="Figure 2. Photograph (A) and interpretive illustration (B) of Kermitops gratus, gen.et sp. nov.(USNM PAL 407585) in ventral view." captionText-2="Figure 3.Photograph of Kermitops gratus, gen. et sp. nov. (USNM PAL 407585) in occipital (A) and lateral (B) view, and the interpretation in occipital (C) and lateral (D) view." pageId="1">Figs 1–3</figureCitation>
|
||||
), a near complete skull roof, occiput with partial braincase, and mandibles preserved. Aside from partially preserved right vomerine teeth, the anterior palatal elements are not preserved. Marginal teeth are not well-preserved or exposed.
|
||||
</materialsCitation>
|
||||
</paragraph>
|
||||
<paragraph id="C208B12836323C5F6006FB94FB77FADF" blockId="1.[809,1459,1119,1362]" pageId="1">
|
||||
<emphasis id="F0C36D3A36323C5F6006FB94FC4BFBFA" box="[810,921,1119,1143]" italics="true" pageId="1">Etymology:</emphasis>
|
||||
Generic epithet is derived from a combination of ‘Kermit’ the famous lissamphibian and beloved Muppets’ character created and originally performed by Jim Henson, and the Greek suffix ‘-
|
||||
<emphasis id="F0C36D3A36323C5F609EFB76FC0AFB59" box="[946,984,1213,1236]" italics="true" pageId="1">ops’</emphasis>
|
||||
, meaning face. Specific epithet
|
||||
<taxonomicName id="05B7CAAB36323C5F6623FB76FA83FB59" box="[1295,1361,1213,1237]" class="Amphibia" family="Branchiosauridae" genus="Kermitops" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="species" species="gratus">
|
||||
‘
|
||||
<emphasis id="F0C36D3A36323C5F6639FB76FA83FB59" box="[1301,1361,1213,1236]" italics="true" pageId="1">gratus</emphasis>
|
||||
</taxonomicName>
|
||||
’ meaning ‘gratitude’ in Latin for the contributions of specimen collector and former
|
||||
<collectionCode id="A4A629ED36323C5F6084FB30FC26FA9E" box="[936,1012,1275,1299]" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:34871" lsid="urn:lsid:biocol.org:col:34871" name="Smithsonian Institution, National Museum of Natural History" pageId="1" type="Museum">USNM</collectionCode>
|
||||
vertebrate palaeontology curator Nicholas Hotton III, and other members of the
|
||||
<collectionCode id="A4A629ED36323C5F67E8FAD0FAC2FABE" box="[1220,1296,1307,1331]" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:34871" lsid="urn:lsid:biocol.org:col:34871" name="Smithsonian Institution, National Museum of Natural History" pageId="1" type="Museum">USNM</collectionCode>
|
||||
field party that were involved in the collection effort.
|
||||
</paragraph>
|
||||
<paragraph id="C208B12836323C5F6006FAB8FC61F984" blockId="1.[808,1461,1395,1545]" pageId="1">
|
||||
<emphasis id="F0C36D3A36323C5F6006FAB8FC2DFA06" box="[810,1023,1395,1419]" italics="true" pageId="1">Locality and Horizon:</emphasis>
|
||||
<materialsCitation id="72DFBB7536323C5F672CFABFFC7DF984" collectingDate="1984-04-06" collectionCode="USNM" collectorName="NE Quad & Nicholas Hotton" county="Wilbarger County" location="East Coffee Creek" municipality="Leonardian" pageId="1" specimenCode="PAL 407585" specimenCount="1">
|
||||
<location id="C768E7F336323C5F672CFABFFB65FA06" LSID="urn:lsid:plazi:treatment:4A1E003E36323C5C60EFFCC4FD02FBF6:C768E7F336323C5F672CFABFFB65FA06" box="[1024,1207,1395,1419]" county="Wilbarger County" municipality="Leonardian" name="East Coffee Creek" pageId="1">East Coffee Creek</location>
|
||||
,
|
||||
<location id="C768E7F336323C5F6792FAB8FAE0FA06" LSID="urn:lsid:plazi:treatment:4A1E003E36323C5C60EFFCC4FD02FBF6:C768E7F336323C5F6792FAB8FAE0FA06" box="[1214,1330,1395,1419]" county="Wilbarger County" municipality="Leonardian" name="Lake Kemp" pageId="1">Lake Kemp</location>
|
||||
(
|
||||
<collectorName id="6F42D4FE36323C5F6611FAB8FA77FA06" box="[1341,1445,1395,1419]" pageId="1">NE Quad</collectorName>
|
||||
),
|
||||
<collectingCounty id="2B69C9A436323C5F6004FA58FC34FA26" box="[808,998,1427,1451]" pageId="1">Wilbarger County</collectingCounty>
|
||||
,
|
||||
<location id="C768E7F336323C5F60DFFA58FAFBFA26" LSID="urn:lsid:plazi:treatment:4A1E003E36323C5C60EFFCC4FD02FBF6:C768E7F336323C5F60DFFA58FAFBFA26" box="[1011,1321,1427,1451]" county="Wilbarger County" municipality="Leonardian" name="Lower Clear Fork Formation" pageId="1">Lower Clear Fork Formation</location>
|
||||
,
|
||||
<collectingMunicipality id="226C2B5236323C5F661AFA58FA7CFA26" box="[1334,1454,1427,1451]" pageId="1">Leonardian</collectingMunicipality>
|
||||
, Early Permian.
|
||||
<collectionCode id="A4A629ED36323C5F60E5FA79FBC7FA47" box="[969,1045,1458,1482]" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:34871" lsid="urn:lsid:biocol.org:col:34871" name="Smithsonian Institution, National Museum of Natural History" pageId="1" type="Museum">USNM</collectionCode>
|
||||
<specimenCode id="9211195336323C5F6730FA79FB4DFA47" box="[1052,1183,1458,1482]" collectionCode="USNM" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:34871" lsid="urn:lsid:biocol.org:col:34871" name="Smithsonian Institution, National Museum of Natural History" pageId="1" type="Museum">PAL 407585</specimenCode>
|
||||
was collected by
|
||||
<collectorName id="6F42D4FE36323C5F6674FA79FCA5FA64" pageId="1">Nicholas Hotton</collectorName>
|
||||
III and the
|
||||
<collectionCode id="A4A629ED36323C5F60D3FA1AFB99FA64" box="[1023,1099,1489,1513]" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:34871" lsid="urn:lsid:biocol.org:col:34871" name="Smithsonian Institution, National Museum of Natural History" pageId="1" type="Museum">USNM</collectionCode>
|
||||
field party on
|
||||
<date id="B60997E836323C5F67C1FA1AFAA7FA64" box="[1261,1397,1489,1513]" pageId="1" value="1984-04-06">
|
||||
<collectingDate id="A64D6E0036323C5F67C1FA1AFAA7FA64" box="[1261,1397,1489,1513]" pageId="1" value="1984-04-06">6 April 1984</collectingDate>
|
||||
</date>
|
||||
(field number 84-)
|
||||
</materialsCitation>
|
||||
.
|
||||
</paragraph>
|
||||
<paragraph id="C208B12836323C5C6006F9E1FD02FBF6" blockId="1.[810,1460,1578,1978]" lastBlockId="2.[127,777,998,1147]" lastPageId="2" pageId="1">
|
||||
<emphasis id="F0C36D3A36323C5F6006F9E1FBDAF9CF" box="[810,1032,1578,1602]" italics="true" pageId="1">Differential Diagnosis:</emphasis>
|
||||
An amphibamiform differentiated from all other amphibamiforms by the following autapomorphies: a small internarial fontanelle contained solely between the premaxillae and a double-pronged anterolateral process of the postparietal that incises the supratemporal. Further differentiated from
|
||||
<taxonomicName id="05B7CAAB36323C5F60BCF90CFBF6F952" box="[912,1060,1735,1759]" class="Amphibia" family="Amphibamidae" genus="Plemmyradytes" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F60BCF90CFBF6F952" box="[912,1060,1735,1759]" italics="true" pageId="1">Plemmyradytes</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36323C5F6702F90CFB73F952" authorityName="Schoch and Rubidge" authorityYear="2005" box="[1070,1185,1735,1759]" class="Amphibia" family="Amphibamidae" genus="Micropholis" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F6702F90CFB73F952" box="[1070,1185,1735,1759]" italics="true" pageId="1">Micropholis</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36323C5F6787F90CFAC9F953" box="[1195,1307,1735,1758]" class="Amphibia" family="Amphibamidae" genus="Pasawioops" higherTaxonomySource="GBIF" kingdom="Animalia" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F6787F90CFAC9F953" box="[1195,1307,1735,1758]" italics="true" pageId="1">Pasawioops</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36323C5F6609F90CFA7FF952" baseAuthorityName="Bourget and Anderson" baseAuthorityYear="2011" box="[1317,1453,1735,1759]" class="Amphibia" family="Amphibamidae" genus="Rubeostratilia" higherTaxonomySource="GBIF" kingdom="Animalia" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F6609F90CFA7FF952" box="[1317,1453,1735,1759]" italics="true" pageId="1">Rubeostratilia</emphasis>
|
||||
</taxonomicName>
|
||||
, and
|
||||
<taxonomicName id="05B7CAAB36323C5F6077F92CFC6FF973" box="[859,957,1767,1790]" class="Amphibia" family="Amphibamidae" genus="Tersomius" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F6077F92CFC6FF973" box="[859,957,1767,1790]" italics="true" pageId="1">Tersomius</emphasis>
|
||||
</taxonomicName>
|
||||
by anteroposteriorly shortened postorbital, resulting in a proportionally shorter postorbital bar. Differentiated from
|
||||
<taxonomicName id="05B7CAAB36323C5F604BF8EEFC31F8B0" authorityName="Steen" authorityYear="1931" box="[871,995,1829,1853]" class="Amphibia" family="Amphibamidae" genus="Platyrhinops" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F604BF8EEFC31F8B0" box="[871,995,1829,1853]" italics="true" pageId="1">Platyrhinops</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36323C5F60DFF8EEFBA4F8B0" authorityName="Cope" authorityYear="1865" box="[1011,1142,1829,1853]" class="Amphibia" family="Amphibamidae" genus="Amphibamus" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F60DFF8EEFBA4F8B0" box="[1011,1142,1829,1853]" italics="true" pageId="1">Amphibamus</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36323C5F67AAF8EEFADDF8B0" baseAuthorityName="Anderson" baseAuthorityYear="2008" box="[1158,1295,1829,1853]" class="Amphibia" family="Amphibamidae" genus="Georgenthalia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F67AAF8EEFADDF8B0" box="[1158,1295,1829,1853]" italics="true" pageId="1">Georgenthalia</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36323C5F6633F8EEFA7FF8B0" box="[1311,1453,1829,1853]" class="Amphibia" family="Amphibamidae" genus="Gerobatrachus" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F6633F8EEFA7FF8B0" box="[1311,1453,1829,1853]" italics="true" pageId="1">Gerobatrachus</emphasis>
|
||||
</taxonomicName>
|
||||
, and branchiosaurids by a narrower skull width. Further differentiated from
|
||||
<taxonomicName id="05B7CAAB36323C5F608AF8A8FBF0F8F6" authorityName="Steen" authorityYear="1931" box="[934,1058,1891,1915]" class="Amphibia" family="Amphibamidae" genus="Platyrhinops" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F608AF8A8FBF0F8F6" box="[934,1058,1891,1915]" italics="true" pageId="1">Platyrhinops</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36323C5F671CF8A8FB61F8F6" authorityName="Cope" authorityYear="1865" box="[1072,1203,1891,1915]" class="Amphibia" family="Amphibamidae" genus="Amphibamus" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F671CF8A8FB61F8F6" box="[1072,1203,1891,1915]" italics="true" pageId="1">Amphibamus</emphasis>
|
||||
</taxonomicName>
|
||||
, and branchiosaurids by the participation of the frontal in the orbital margin. Shares with
|
||||
<taxonomicName id="05B7CAAB36323C5F6006F869FC74F837" authorityName="Steen" authorityYear="1931" box="[810,934,1954,1978]" class="Amphibia" family="Amphibamidae" genus="Platyrhinops" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F6006F869FC74F837" box="[810,934,1954,1978]" italics="true" pageId="1">Platyrhinops</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36323C5F6099F869FBEAF837" authorityName="Cope" authorityYear="1865" box="[949,1080,1954,1978]" class="Amphibia" family="Amphibamidae" genus="Amphibamus" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F6099F869FBEAF837" box="[949,1080,1954,1978]" italics="true" pageId="1">Amphibamus</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36323C5F676BF869FB6CF837" baseAuthorityName="Gee and Reisz" baseAuthorityYear="2020" box="[1095,1214,1954,1978]" class="Amphibia" genus="Nanobamus" higherTaxonomySource="GBIF" kingdom="Animalia" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F676BF869FB6CF837" box="[1095,1214,1954,1978]" italics="true" pageId="1">Nanobamus</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36323C5F67E0F868FAFCF837" box="[1228,1326,1955,1978]" class="Amphibia" family="Amphibamidae" genus="Tersomius" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F67E0F868FAFCF837" box="[1228,1326,1955,1978]" italics="true" pageId="1">Tersomius</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36323C5C6611F868FED8FC73" authority=", Rubeostritalia" authorityName="Rubeostritalia" class="Amphibia" family="Amphibamidae" genus="Pasawioops" higherTaxonomySource="GBIF" kingdom="Animalia" lastPageId="2" pageId="1" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36323C5F6611F868FA7FF837" box="[1341,1453,1955,1978]" italics="true" pageId="1">Pasawioops</emphasis>
|
||||
,
|
||||
<emphasis id="F0C36D3A36313C5C63ADFC2DFED8FC73" box="[129,266,998,1022]" italics="true" pageId="2">Rubeostritalia</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36313C5C6233FC2DFE7AFC73" baseAuthorityName="Anderson" baseAuthorityYear="2008" box="[287,424,998,1022]" class="Amphibia" family="Amphibamidae" genus="Georgenthalia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="2" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36313C5C6233FC2DFE7AFC73" box="[287,424,998,1022]" italics="true" pageId="2">Georgenthalia</emphasis>
|
||||
</taxonomicName>
|
||||
, and
|
||||
<taxonomicName id="05B7CAAB36313C5C62DFFC2DFD53FC73" box="[499,641,998,1022]" class="Amphibia" family="Amphibamidae" genus="Gerobatrachus" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="2" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36313C5C62DFFC2DFD53FC73" box="[499,641,998,1022]" italics="true" pageId="2">Gerobatrachus</emphasis>
|
||||
</taxonomicName>
|
||||
, but differs from
|
||||
<taxonomicName id="05B7CAAB36313C5C639BFBCEFEE7FB90" authorityName="Sigurdsen and Bolt" authorityYear="2010" box="[183,309,1029,1053]" class="Amphibia" family="Amphibamidae" genus="Doleserpeton" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="2" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36313C5C639BFBCEFEE7FB90" box="[183,309,1029,1053]" italics="true" pageId="2">Doleserpeton</emphasis>
|
||||
</taxonomicName>
|
||||
,
|
||||
<taxonomicName id="05B7CAAB36313C5C6213FBCEFE60FB90" authorityName="Schoch and Rubidge" authorityYear="2005" box="[319,434,1029,1053]" class="Amphibia" family="Amphibamidae" genus="Micropholis" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="2" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36313C5C6213FBCEFE60FB90" box="[319,434,1029,1053]" italics="true" pageId="2">Micropholis</emphasis>
|
||||
</taxonomicName>
|
||||
, and branchiosaurids by, the presence of an anterior flaring of the frontal. Differs from at least
|
||||
<taxonomicName id="05B7CAAB36313C5C63ADFB8FFED8FBD1" baseAuthorityName="Anderson" baseAuthorityYear="2008" box="[129,266,1092,1116]" class="Amphibia" family="Amphibamidae" genus="Georgenthalia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Temnospondyli" pageId="2" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36313C5C63ADFB8FFED8FBD1" box="[129,266,1092,1116]" italics="true" pageId="2">Georgenthalia</emphasis>
|
||||
</taxonomicName>
|
||||
and
|
||||
<taxonomicName id="05B7CAAB36313C5C6219FB8FFE7EFBD1" baseAuthorityName="Gee and Reisz" baseAuthorityYear="2020" box="[309,428,1092,1116]" class="Amphibia" genus="Nanobamus" higherTaxonomySource="GBIF" kingdom="Animalia" pageId="2" phylum="Chordata" rank="genus">
|
||||
<emphasis id="F0C36D3A36313C5C6219FB8FFE7EFBD1" box="[309,428,1092,1116]" italics="true" pageId="2">Nanobamus</emphasis>
|
||||
</taxonomicName>
|
||||
in the absence of a keyhole-shaped external narial opening, where the lacrimal is emarginated.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
|
|
@ -1,67 +1,67 @@
|
|||
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<treatment id="8F310D3D957DFF96CC38FAE4842D6C7B" LSID="urn:lsid:plazi:treatment:8F310D3D957DFF96CC38FAE4842D6C7B" httpUri="http://treatment.plazi.org/id/8F310D3D957DFF96CC38FAE4842D6C7B" lastPageNumber="70" pageId="33" pageNumber="70">
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|
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@ -85,7 +85,8 @@ Harmer, 1918
|
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<taxonomicName id="C098C7A8957DFF96CDABFA8282776AC3" authority="Harmer, 1918" authorityName="Harmer" authorityYear="1918" box="[132,570,1392,1416]" class="Gastropoda" family="Buccinidae" genus="Neptunea" kingdom="Animalia" order="Neogastropoda" pageId="33" pageNumber="70" phylum="Mollusca" rank="variety" species="contraria" variety="informis">
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<treatmentCitation id="86399A3A957DFF96CDABFA82834F6AC3" author="HARMER F. W." box="[132,770,1392,1416]" page="367" pageId="33" pageNumber="70" year="1918">
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<taxonomicName id="C098C7A8957DFF96CDABFA8282776AC3" ID-CoL="7LZFK" authority="Harmer, 1918" authorityName="Harmer" authorityYear="1918" box="[132,570,1392,1416]" class="Gastropoda" family="Buccinidae" genus="Neptunea" kingdom="Animalia" order="Neogastropoda" pageId="33" pageNumber="70" phylum="Mollusca" rank="variety" species="contraria" variety="informis">
|
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<emphasis id="35EC6039957DFF96CDABFA82817B6AC3" box="[132,310,1393,1416]" italics="true" pageId="33" pageNumber="70">Neptunea contraria</emphasis>
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var.
|
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<emphasis id="35EC6039957DFF96CC70FA8381E16AC3" box="[351,428,1392,1416]" italics="true" pageId="33" pageNumber="70">informis</emphasis>
|
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|
|
@ -93,7 +94,9 @@ Harmer, 1918
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</taxonomicName>
|
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(
|
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<emphasis id="35EC6039957DFF96CF68FA8282CB6AC3" box="[583,646,1393,1416]" italics="true" pageId="33" pageNumber="70">partim</emphasis>
|
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): 367, pl. 36, figs 30-31 [not pl. 16, fig. 6, that corresponds to
|
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): 367, pl. 36
|
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</treatmentCitation>
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, figs 30-31 [not pl. 16, fig. 6, that corresponds to
|
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<taxonomicName id="C098C7A8957DFF96CF7EFA7F81686AF6" authority="(Linnaeus, 1771)" baseAuthorityName="Linnaeus" baseAuthorityYear="1771" class="Gastropoda" family="Buccinidae" genus="Neptunea" kingdom="Animalia" order="Neogastropoda" pageId="33" pageNumber="70" phylum="Mollusca" rank="species" species="contraria">
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||||
<emphasis id="35EC6039957DFF96CF7EFA7F834B6AE9" box="[593,774,1419,1443]" italics="true" pageId="33" pageNumber="70">Neptunea contraria</emphasis>
|
||||
(Linnaeus, 1771)
|
||||
|
|
@ -105,7 +108,8 @@ Harmer, 1914] (
|
|||
Harmer, 1914).
|
||||
</paragraph>
|
||||
<paragraph id="0727BC2B957DFF96CDABFA25813A6969" blockId="33.[132,775,1493,1570]" pageId="33" pageNumber="70">
|
||||
<taxonomicName id="C098C7A8957DFF96CDABFA2582E46AA6" authority="Harmer, 1918" authorityName="Harmer" authorityYear="1918" box="[132,681,1493,1517]" class="Gastropoda" family="Buccinidae" genus="Neptunea" kingdom="Animalia" order="Neogastropoda" pageId="33" pageNumber="70" phylum="Mollusca" rank="variety" species="antiqua" variety="inversa">
|
||||
<treatmentCitation id="86399A3A957DFF96CDABFA2580E16943" author="HARMER F. W." page="368" pageId="33" pageNumber="70" year="1918">
|
||||
<taxonomicName id="C098C7A8957DFF96CDABFA2582E46AA6" ID-CoL="4743N" authority="Harmer, 1918" authorityName="Harmer" authorityYear="1918" box="[132,681,1493,1517]" class="Gastropoda" family="Buccinidae" genus="Neptunea" kingdom="Animalia" order="Neogastropoda" pageId="33" pageNumber="70" phylum="Mollusca" rank="variety" species="antiqua" variety="inversa">
|
||||
<emphasis id="35EC6039957DFF96CDABFA25817C6AA6" box="[132,305,1494,1517]" italics="true" pageId="33" pageNumber="70">Neptunea antiqua</emphasis>
|
||||
(Linnaeus) var.
|
||||
<emphasis id="35EC6039957DFF96CCFBFA25825B6AA6" box="[468,534,1494,1517]" italics="true" pageId="33" pageNumber="70">inversa</emphasis>
|
||||
|
|
@ -113,7 +117,9 @@ Harmer, 1918
|
|||
</taxonomicName>
|
||||
(
|
||||
<emphasis id="35EC6039957DFF96CF97FA2582B56AA6" box="[696,760,1494,1517]" italics="true" pageId="33" pageNumber="70">partim</emphasis>
|
||||
): 368, pl. 36, fig. 26 [not fig. 28, that corresponds to
|
||||
): 368
|
||||
</treatmentCitation>
|
||||
, pl. 36, fig. 26 [not fig. 28, that corresponds to
|
||||
<taxonomicName id="C098C7A8957DFF96CF51FA0281216969" authority="(Linnaeus, 1771)" baseAuthorityName="Linnaeus" baseAuthorityYear="1771" class="Gastropoda" family="Buccinidae" genus="Neptunea" kingdom="Animalia" order="Neogastropoda" pageId="33" pageNumber="70" phylum="Mollusca" rank="species" species="contraria">
|
||||
<emphasis id="35EC6039957DFF96CF51FA0280F46969" italics="true" pageId="33" pageNumber="70">Neptunea contraria</emphasis>
|
||||
(Linnaeus, 1771)
|
||||
|
|
@ -127,7 +133,7 @@ Harmer, 1918
|
|||
</taxonomicName>
|
||||
–
|
||||
<treatmentCitation id="86399A3A957DFF96CC6FF9C882706918" author="VERVOENEN M. & VAN NIEULANDE F. & FRAUSSEN K. P. & WESSELINGH F. & POUWER R." box="[320,573,1594,1619]" page="31" pageId="33" pageNumber="70" year="2014">
|
||||
<bibRefCitation id="6309C1DA957DFF96CC6FF9C882706918" author="VERVOENEN M. & VAN NIEULANDE F. & FRAUSSEN K. P. & WESSELINGH F. & POUWER R." box="[320,573,1594,1619]" pageId="33" pageNumber="70" pagination="17 - 34" refId="ref55688" refString="VERVOENEN M., VAN NIEULANDE F., FRAUSSEN K. P. WESSELINGH F. & POUWER R. 2014. - Pliocene to Quaternary sinistral Neptunea species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic. Cainozoic Research 14 (1): 17-34." type="journal article" year="2014">
|
||||
<bibRefCitation id="6309C1DA957DFF96CC6FF9C882706918" author="Vervoenen" box="[320,573,1594,1619]" etAl="et al." firstAuthor="Vervoenen" page="31" pageId="33" pageNumber="70" pagination="17 - 34" refId="ref55688" refString="VERVOENEN M., VAN NIEULANDE F., FRAUSSEN K. P. WESSELINGH F. & POUWER R. 2014. - Pliocene to Quaternary sinistral Neptunea species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic. Cainozoic Research 14 (1): 17-34." type="journal article" year="2014">
|
||||
Vervoenen
|
||||
<emphasis id="35EC6039957DFF96CC81F9C881906919" box="[430,477,1594,1618]" italics="true" pageId="33" pageNumber="70">et al.</emphasis>
|
||||
2014: 31
|
||||
|
|
@ -135,18 +141,20 @@ Vervoenen
|
|||
</treatmentCitation>
|
||||
, figs 24-26. —
|
||||
<treatmentCitation id="86399A3A957DFF96CFF9F9C881266926" author="WESSELINGH F. & NIEULANDE F. & FRAUSSEN K. & MOERDIJK P. W. & JANSSEN A. & POUWER R. & RIJKEN R." page="196" pageId="33" pageNumber="70" year="2014">
|
||||
<bibRefCitation id="6309C1DA957DFF96CFF9F9C881266926" author="WESSELINGH F. & NIEULANDE F. & FRAUSSEN K. & MOERDIJK P. W. & JANSSEN A. & POUWER R. & RIJKEN R." pageId="33" pageNumber="70" pagination="194 - 205" refId="ref55973" refString="WESSELINGH F., NIEULANDE F., FRAUSSEN K., MOERDIJK P. W., JANSSEN A., POUWER R. & RIJKEN R. 2014. - De fossiele schelpen van de Nederlandse kust II, deel 8. Buccinoidea. Spirula 401: 194-205." type="journal article" year="2014">
|
||||
<bibRefCitation id="6309C1DA957DFF96CFF9F9C881266926" author="Wesselingh" etAl="et al." firstAuthor="Wesselingh" page="196" pageId="33" pageNumber="70" pagination="194 - 205" refId="ref55973" refString="WESSELINGH F., NIEULANDE F., FRAUSSEN K., MOERDIJK P. W., JANSSEN A., POUWER R. & RIJKEN R. 2014. - De fossiele schelpen van de Nederlandse kust II, deel 8. Buccinoidea. Spirula 401: 194-205." type="journal article" year="2014">
|
||||
Wesselingh
|
||||
<emphasis id="35EC6039957DFF96CDE0F9A580B36926" box="[207,254,1621,1645]" italics="true" pageId="33" pageNumber="70">et al.</emphasis>
|
||||
2014: 196
|
||||
</bibRefCitation>
|
||||
</treatmentCitation>
|
||||
, fig. 10. —
|
||||
<bibRefCitation id="6309C1DA957DFF96CCCEF9A682C16926" author="PREECE R. C. & MEIJER T. & PENKMAN K. E. H. & DEMARCHI B. & MAYHEW D. F. & PARFITT S. A." box="[481,652,1621,1645]" pageId="33" pageNumber="70" refId="ref52074" refString="PREECE R. C., MEIJER T., PENKMAN K. E. H., DEMARCHI B., MAYHEW D. F. & PARFITT S. A. 2020. - The palaeontology and dating of the ' Weybourne Crag', an important marker horizon in the Early Pleistocene of the southern North Sea basin. Quaternary Science Reviews 236: 106177. https://doi.org/10.1016/j.quascirev.2020.106177" type="journal volume" year="2020">
|
||||
<treatmentCitation id="86399A3A957DFF96CCCEF9A682C16926" author="PREECE R. C., MEIJER T., PENKMAN K. E. H., DEMARCHI B., MAYHEW D. F. & PARFITT S. A." box="[481,652,1621,1645]" pageId="33" pageNumber="70" year="2020">
|
||||
<bibRefCitation id="6309C1DA957DFF96CCCEF9A682C16926" author="Preece" box="[481,652,1621,1645]" etAl="et al." firstAuthor="Preece" pageId="33" pageNumber="70" refId="ref52074" refString="PREECE R. C., MEIJER T., PENKMAN K. E. H., DEMARCHI B., MAYHEW D. F. & PARFITT S. A. 2020. - The palaeontology and dating of the ' Weybourne Crag', an important marker horizon in the Early Pleistocene of the southern North Sea basin. Quaternary Science Reviews 236: 106177. https://doi.org/10.1016/j.quascirev.2020.106177" type="journal volume" year="2020">
|
||||
Preece
|
||||
<emphasis id="35EC6039957DFF96CF0BF9A5821F6926" box="[548,594,1621,1645]" italics="true" pageId="33" pageNumber="70">et al.</emphasis>
|
||||
2020
|
||||
</bibRefCitation>
|
||||
</treatmentCitation>
|
||||
: fig. 7e.
|
||||
</treatmentCitationGroup>
|
||||
</paragraph>
|
||||
|
|
@ -212,7 +220,7 @@ with flat whorl profile and shallow suture. Shell smooth or with low spiral cord
|
|||
: NSB, Norwich Crag and Weybourne Crag,
|
||||
<collectingCountry id="7F8FFCBB957DFF96CC6CF82081DA68A0" box="[323,407,2003,2027]" name="United Kingdom" pageId="33" pageNumber="70">England</collectingCountry>
|
||||
(Harmer 1918;
|
||||
<bibRefCitation id="6309C1DA957DFF96CF6DF82782B468A0" author="PREECE R. C. & MEIJER T. & PENKMAN K. E. H. & DEMARCHI B. & MAYHEW D. F. & PARFITT S. A." box="[578,761,2003,2027]" pageId="33" pageNumber="70" refId="ref52074" refString="PREECE R. C., MEIJER T., PENKMAN K. E. H., DEMARCHI B., MAYHEW D. F. & PARFITT S. A. 2020. - The palaeontology and dating of the ' Weybourne Crag', an important marker horizon in the Early Pleistocene of the southern North Sea basin. Quaternary Science Reviews 236: 106177. https://doi.org/10.1016/j.quascirev.2020.106177" type="journal volume" year="2020">
|
||||
<bibRefCitation id="6309C1DA957DFF96CF6DF82782B468A0" author="Preece" box="[578,761,2003,2027]" etAl="et al." firstAuthor="Preece" pageId="33" pageNumber="70" refId="ref52074" refString="PREECE R. C., MEIJER T., PENKMAN K. E. H., DEMARCHI B., MAYHEW D. F. & PARFITT S. A. 2020. - The palaeontology and dating of the ' Weybourne Crag', an important marker horizon in the Early Pleistocene of the southern North Sea basin. Quaternary Science Reviews 236: 106177. https://doi.org/10.1016/j.quascirev.2020.106177" type="journal volume" year="2020">
|
||||
Preece
|
||||
<emphasis id="35EC6039957DFF96CFA5F82782F168A0" box="[650,700,2003,2027]" italics="true" pageId="33" pageNumber="70">et al.</emphasis>
|
||||
2020
|
||||
|
|
@ -220,7 +228,7 @@ Preece
|
|||
); Atlantic, Selsoif, NW
|
||||
<collectingCountry id="7F8FFCBB957DFF96C927FF2484046FA5" box="[1032,1097,215,238]" name="France" pageId="33" pageNumber="70">France</collectingCountry>
|
||||
(
|
||||
<bibRefCitation id="6309C1DA957DFF96C976FF24857E6FA4" author="VERVOENEN M. & VAN NIEULANDE F. & FRAUSSEN K. P. & WESSELINGH F. & POUWER R." box="[1113,1331,215,239]" pageId="33" pageNumber="70" pagination="17 - 34" refId="ref55688" refString="VERVOENEN M., VAN NIEULANDE F., FRAUSSEN K. P. WESSELINGH F. & POUWER R. 2014. - Pliocene to Quaternary sinistral Neptunea species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic. Cainozoic Research 14 (1): 17-34." type="journal article" year="2014">
|
||||
<bibRefCitation id="6309C1DA957DFF96C976FF24857E6FA4" author="Vervoenen" box="[1113,1331,215,239]" etAl="et al." firstAuthor="Vervoenen" pageId="33" pageNumber="70" pagination="17 - 34" refId="ref55688" refString="VERVOENEN M., VAN NIEULANDE F., FRAUSSEN K. P. WESSELINGH F. & POUWER R. 2014. - Pliocene to Quaternary sinistral Neptunea species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic. Cainozoic Research 14 (1): 17-34." type="journal article" year="2014">
|
||||
Vervoenen
|
||||
<emphasis id="35EC6039957DFF96C9E7FF2B84B56FA4" box="[1224,1272,215,239]" italics="true" pageId="33" pageNumber="70">et al.</emphasis>
|
||||
2014
|
||||
|
|
@ -230,7 +238,7 @@ Vervoenen
|
|||
: Channel region,
|
||||
<collectingCountry id="7F8FFCBB957DFF96C985FF0284B06E42" box="[1194,1277,241,265]" name="United Kingdom" pageId="33" pageNumber="70">England</collectingCountry>
|
||||
(
|
||||
<bibRefCitation id="6309C1DA957DFF96C821FF01832C6E6F" author="VERVOENEN M. & VAN NIEULANDE F. & FRAUSSEN K. P. & WESSELINGH F. & POUWER R." pageId="33" pageNumber="70" pagination="17 - 34" refId="ref55688" refString="VERVOENEN M., VAN NIEULANDE F., FRAUSSEN K. P. WESSELINGH F. & POUWER R. 2014. - Pliocene to Quaternary sinistral Neptunea species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic. Cainozoic Research 14 (1): 17-34." type="journal article" year="2014">
|
||||
<bibRefCitation id="6309C1DA957DFF96C821FF01832C6E6F" author="Vervoenen" etAl="et al." firstAuthor="Vervoenen" pageId="33" pageNumber="70" pagination="17 - 34" refId="ref55688" refString="VERVOENEN M., VAN NIEULANDE F., FRAUSSEN K. P. WESSELINGH F. & POUWER R. 2014. - Pliocene to Quaternary sinistral Neptunea species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic. Cainozoic Research 14 (1): 17-34." type="journal article" year="2014">
|
||||
Vervoenen
|
||||
<emphasis id="35EC6039957DFF96C850FF0185FD6E42" box="[1407,1456,241,265]" italics="true" pageId="33" pageNumber="70">et al.</emphasis>
|
||||
2014
|
||||
|
|
@ -242,7 +250,7 @@ Vervoenen
|
|||
(indeterminate):
|
||||
<collectingCountry id="7F8FFCBB957DFF96C935FED584DC6E75" box="[1050,1169,294,318]" name="Netherlands" pageId="33" pageNumber="70">Netherlands</collectingCountry>
|
||||
(
|
||||
<bibRefCitation id="6309C1DA957DFF96C9B0FED4853B6E74" author="VERVOENEN M. & VAN NIEULANDE F. & FRAUSSEN K. P. & WESSELINGH F. & POUWER R." box="[1183,1398,294,319]" pageId="33" pageNumber="70" pagination="17 - 34" refId="ref55688" refString="VERVOENEN M., VAN NIEULANDE F., FRAUSSEN K. P. WESSELINGH F. & POUWER R. 2014. - Pliocene to Quaternary sinistral Neptunea species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic. Cainozoic Research 14 (1): 17-34." type="journal article" year="2014">
|
||||
<bibRefCitation id="6309C1DA957DFF96C9B0FED4853B6E74" author="Vervoenen" box="[1183,1398,294,319]" etAl="et al." firstAuthor="Vervoenen" pageId="33" pageNumber="70" pagination="17 - 34" refId="ref55688" refString="VERVOENEN M., VAN NIEULANDE F., FRAUSSEN K. P. WESSELINGH F. & POUWER R. 2014. - Pliocene to Quaternary sinistral Neptunea species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic. Cainozoic Research 14 (1): 17-34." type="journal article" year="2014">
|
||||
Vervoenen
|
||||
<emphasis id="35EC6039957DFF96C822FED485716E75" box="[1293,1340,294,318]" italics="true" pageId="33" pageNumber="70">et al.</emphasis>
|
||||
2014
|
||||
|
|
@ -265,7 +273,7 @@ differs from
|
|||
(Linnaeus, 1771)
|
||||
</taxonomicName>
|
||||
in being smaller, lower spired, with less convex whorls separated by a shallower suture. It is a marker species for early-middle Pleistocene assemblages of the southern North Sea Basin, Channel and Irish Sea (
|
||||
<bibRefCitation id="6309C1DA957DFF96C8AFFDE483BE6D1A" author="VERVOENEN M. & VAN NIEULANDE F. & FRAUSSEN K. P. & WESSELINGH F. & POUWER R." pageId="33" pageNumber="70" pagination="17 - 34" refId="ref55688" refString="VERVOENEN M., VAN NIEULANDE F., FRAUSSEN K. P. WESSELINGH F. & POUWER R. 2014. - Pliocene to Quaternary sinistral Neptunea species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic. Cainozoic Research 14 (1): 17-34." type="journal article" year="2014">
|
||||
<bibRefCitation id="6309C1DA957DFF96C8AFFDE483BE6D1A" author="Vervoenen" etAl="et al." firstAuthor="Vervoenen" pageId="33" pageNumber="70" pagination="17 - 34" refId="ref55688" refString="VERVOENEN M., VAN NIEULANDE F., FRAUSSEN K. P. WESSELINGH F. & POUWER R. 2014. - Pliocene to Quaternary sinistral Neptunea species (Mollusca, Gastropoda, Buccinidae) from the NE Atlantic. Cainozoic Research 14 (1): 17-34." type="journal article" year="2014">
|
||||
Vervoenen
|
||||
<emphasis id="35EC6039957DFF96CEAFFDC483FE6D1B" box="[896,947,566,592]" italics="true" pageId="33" pageNumber="70">et al.</emphasis>
|
||||
2014
|
||||
|
|
|
|||
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Reference in a new issue