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<document id="C661352684DD0A8AA6441929D8B2CF63" ID-DOI="10.1515/mammalia-2023-0072" ID-ISSN="1864-1547" ID-Zenodo-Dep="13913759" IM.bibliography_approvedBy="diego" IM.illustrations_approvedBy="juliana" IM.materialsCitations_approvedBy="juliana" IM.metadata_approvedBy="juliana" IM.tables_approvedBy="juliana" IM.taxonomicNames_approvedBy="juliana" IM.treatments_approvedBy="juliana" checkinTime="1728575421004" checkinUser="plazi" docAuthor="Mhamphi, Ginethon G., Msoffe, Venance T., Lyimo, Charles M., Katakweba, Abdul S., Massawe, Apia W., Komba, Erick V. G. & Mnyone, Ladslaus L." docDate="2024" docId="024987CDFF85FFD1F520FD9A77B9A5FA" docLanguage="en" docName="10.1515_mammalia-2023-0072.pdf" docOrigin="Mammalia (Warsaw, Poland) 88 (1)" docSource="http://dx.doi.org/10.1515/mammalia-2023-0072" docStyle="DocumentStyle:6C173CCC1D5EC0136B755626151D98B6.3:Mammalia.2015-.journal_article" docStyleId="6C173CCC1D5EC0136B755626151D98B6" docStyleName="Mammalia.2015-.journal_article" docStyleVersion="3" docTitle="Bartonella DNA" docType="treatment" docVersion="1" lastPageNumber="45" masterDocId="FE70FFB5FF81FFD7F63AFFEF732CA27A" masterDocTitle="Detection and characterization of zoonotic Bartonella spp. in rodents and shrews ectoparasites from Kigoma and Morogoro regions, Tanzania" masterLastPageNumber="51" masterPageNumber="41" pageNumber="45" updateTime="1741626186453" updateUser="juliana">
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<mods:titleInfo id="3A3445C889F191D1AFC0131E85E100C2">
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<mods:title id="C56A7E8FEF7A4F193A9BFA2A251C34FA">Detection and characterization of zoonotic Bartonella spp. in rodents and shrews ectoparasites from Kigoma and Morogoro regions, Tanzania</mods:title>
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<mods:roleTerm id="7ED80F0EAB4110DEE05A37BBA33B099A">Author</mods:roleTerm>
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<mods:namePart id="BF6185E63731F1A485C6AAFF520CE745">Mhamphi, Ginethon G.</mods:namePart>
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<mods:nameIdentifier id="42BB937692381BB9EB345EC30BA532FA" type="ORCID">0000-0002-8354-2301</mods:nameIdentifier>
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<mods:affiliation id="CF6FBCE03BF5001FFBCC19D6CC1B3BC8">Department of Wildlife Management and Tourism, Sokoine University of Agriculture, P. O. Box 3009 Morogoro, Tanzania; and Institute of Pest Management, Sokoine University of Agriculture, P. O. Box 3110 Morogoro, Tanzania</mods:affiliation>
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<mods:nameIdentifier id="DDD08A3AFECE830A53F51A4212902191" type="email">mhamphi@sua.ac.tz.</mods:nameIdentifier>
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<mods:namePart id="03B6BBFCE327EFA3C1D3B783542778F4">Msoffe, Venance T.</mods:namePart>
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<mods:affiliation id="8AA41D6681251CC0D01214EACEE22CD1">Mkwawa University College of Education, The Constituent College of University of Dar es Salaam, P. O. Box 2513, Iringa, Tanzania</mods:affiliation>
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<mods:namePart id="79D0A46F2C534FCD2022FDCBA02EEEDD">Lyimo, Charles M.</mods:namePart>
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<mods:affiliation id="FBF753E3F8F18A618232D76F25C8057B">Department of Animal, Aquaculture and Range Sciences, Sokoine University of Agriculture, P. O. Box 3004 Morogoro, Tanzania</mods:affiliation>
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<mods:namePart id="E8518959149A98A4EA7AD98823F612F6">Katakweba, Abdul S.</mods:namePart>
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<mods:affiliation id="CB04C4D22EBBB7D3C6C4A88C31C07353">Institute of Pest Management, Sokoine University of Agriculture, P. O. Box 3110 Morogoro, Tanzania</mods:affiliation>
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<mods:namePart id="EA1DC545174B85C5A167CCAD2226A5E4">Massawe, Apia W.</mods:namePart>
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<mods:affiliation id="B7FF5DFDECDBF14D00F4BCDE0C201526">Institute of Pest Management, Sokoine University of Agriculture, P. O. Box 3110 Morogoro, Tanzania</mods:affiliation>
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<mods:name id="DA371ADB4730D38DDB5FD7A634F5B2E5" type="personal">
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<mods:namePart id="F4B457C688DC46EFBC554BE2E0B9E302">Komba, Erick V. G.</mods:namePart>
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<mods:affiliation id="470348DBE42E2FFA03B81194B1F1CB2F">Tanzania Livestock Research Institute, Ministry of Livestock and Fisheries Development, Dodoma, Tanzania; and Department of Veterinary Medicine and Public Health, Sokoine University of Agriculture, Morogoro, Tanzania</mods:affiliation>
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<mods:namePart id="1BD1353C3C760F890F9A791C097D8068">Mnyone, Ladslaus L.</mods:namePart>
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<mods:affiliation id="E3FC5CF9EA3F7FCD3DFDAE649E6AD1C8">Institute of Pest Management, Sokoine University of Agriculture, P. O. Box 3110 Morogoro, Tanzania & Division of Science, Technology and Innovation, Ministry of Education, Science and Technology, Dodoma, Tanzania</mods:affiliation>
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<mods:title id="23829A5D8A48CBF1D247B5D35E73F831">Mammalia</mods:title>
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<mods:part id="72B8FD6C70E3F34662954656D0BF3E32">
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<mods:date id="00A729C06CFFCB6A4D15A91B81375BEF">2024</mods:date>
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<mods:title id="94BB335BE66FB0EDF66CC8E8D5FBC6BF">Warsaw, Poland</mods:title>
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<mods:number id="191DD01EE313C041E590144A4940D6AA">2023-12-04</mods:number>
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<mods:number id="9BCC4A510F08C218E1349063653B2E2F">88</mods:number>
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<mods:number id="8EC48F19F56FA1D1498008573AE729BE">1</mods:number>
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<mods:start id="DDF91683558B374210F859CEA9DA1521">41</mods:start>
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<mods:url id="D9B8379FAEB8605B15808BECC1E83BC4">http://dx.doi.org/10.1515/mammalia-2023-0072</mods:url>
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<mods:classification id="F7ADBC3973ECE17061A3A024D85B5DDB">journal article</mods:classification>
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<mods:identifier id="1DDD789553108062BFF58E0C07A704B8" type="DOI">10.1515/mammalia-2023-0072</mods:identifier>
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<mods:identifier id="B4FF32B2F8FD4EF1DFCAB7167AA555D2" type="ISSN">1864-1547</mods:identifier>
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<mods:identifier id="56262CDF1D695B033EBF62DEA757C73F" type="Zenodo-Dep">13913759</mods:identifier>
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<subSubSection id="C2FA6550FF85FFD3F520FD9A777CA0C0" pageId="4" pageNumber="45" type="nomenclature">
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<paragraph id="8A5F36DBFF85FFD3F520FD9A777CA0C0" blockId="4.[794,1267,629,698]" pageId="4" pageNumber="45">
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<heading id="D11781B7FF85FFD3F520FD9A777CA0C0" bold="true" fontSize="12" level="2" pageId="4" pageNumber="45" reason="2">
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<emphasis id="B894EAC9FF85FFD3F520FD9A777CA0C0" bold="true" pageId="4" pageNumber="45">
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3.2 Detection of
|
||||
<taxonomicName id="4DE04D58FF85FFD3F23EFD9A77FCA0E8" ID-CoL="3894" authority="DNA" authorityName="DNA" box="[1028,1232,629,658]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="4" pageNumber="45" phylum="Proteobacteria" rank="genus">
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<emphasis id="B894EAC9FF85FFD3F23EFD9A77A7A0E8" bold="true" box="[1028,1163,629,658]" italics="true" pageId="4" pageNumber="45">Bartonella</emphasis>
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||||
DNA
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||||
</taxonomicName>
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||||
in ectoparasite pools
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||||
</emphasis>
|
||||
</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C2FA6550FF85FFD1F520FD0877B9A5FA" lastPageId="6" lastPageNumber="47" pageId="4" pageNumber="45" type="description">
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<paragraph id="8A5F36DBFF85FFD3F520FD0870A3A6E1" blockId="4.[794,1422,743,1180]" pageId="4" pageNumber="45">
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<taxonomicName id="4DE04D58FF85FFD3F520FD087091A087" authority="DNA" authorityName="DNA" box="[794,957,743,765]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="4" pageNumber="45" phylum="Proteobacteria" rank="genus">
|
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<emphasis id="B894EAC9FF85FFD3F520FD0870ABA086" box="[794,903,743,764]" italics="true" pageId="4" pageNumber="45">Bartonella</emphasis>
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||||
DNA
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||||
</taxonomicName>
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||||
was amplified in 49 pools (34.8 %) out of the 141 pools of all ectoparasites. For individual
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<typeStatus id="555B8879FF85FFD3F2C7FCE57618A165" box="[1277,1332,778,799]" pageId="4" pageNumber="45">types</typeStatus>
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||||
of ectoparasite pools,
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||||
<taxonomicName id="4DE04D58FF85FFD3F584FCC37748A138" authority="DNA" authorityName="DNA" box="[958,1124,812,834]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="4" pageNumber="45" phylum="Proteobacteria" rank="genus">
|
||||
<emphasis id="B894EAC9FF85FFD3F584FCC37707A13B" box="[958,1067,812,833]" italics="true" pageId="4" pageNumber="45">Bartonella</emphasis>
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||||
DNA
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||||
</taxonomicName>
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||||
was detected in 25 (32.9 %) out of 76 pools of mite, 22 (40 %) out of 55 pools of flea species, 1 (12.5 %) out of eight pools of ticks and 1 (50 %) out of two pools of lice (Table 2). Among the habitat variables, the farm habitat detected 39.6 % slightly higher than 33.3 % of the indoor habitat. The natural habitat detected 22.2 % and the peridomestic habitat detected 7.1 %. Statistically, there were significant differences in the prevalence of
|
||||
<taxonomicName id="4DE04D58FF85FFD3F2D2FBF176A1A649" authority="DNA" authorityName="DNA" box="[1256,1421,1054,1075]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="4" pageNumber="45" phylum="Proteobacteria" rank="genus">
|
||||
<emphasis id="B894EAC9FF85FFD3F2D2FBF17679A649" box="[1256,1365,1054,1075]" italics="true" pageId="4" pageNumber="45">Bartonella</emphasis>
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||||
DNA
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||||
</taxonomicName>
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||||
among two variables, namely habitats (
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<emphasis id="B894EAC9FF85FFD3F2F4FBAE77F5A62C" box="[1230,1241,1089,1110]" italics="true" pageId="4" pageNumber="45">χ</emphasis>
|
||||
<superScript id="7D959B93FF85FFD3F2E3FBD577CCA633" attach="left" box="[1241,1248,1082,1097]" fontSize="6" pageId="4" pageNumber="45">2</superScript>
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||||
= 8.589, df = 3,
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||||
<emphasis id="B894EAC9FF85FFD3F520FB8B700BA603" box="[794,807,1124,1145]" italics="true" pageId="4" pageNumber="45">p</emphasis>
|
||||
= 0.035) and ectoparasites species (
|
||||
<emphasis id="B894EAC9FF85FFD3F28FFB8B77EDA603" box="[1205,1217,1124,1145]" italics="true" pageId="4" pageNumber="45">χ</emphasis>
|
||||
<superScript id="7D959B93FF85FFD3F2FBFBB277E4A616" attach="left" box="[1217,1224,1117,1132]" fontSize="6" pageId="4" pageNumber="45">2</superScript>
|
||||
= 16.5646, df = 7,
|
||||
<emphasis id="B894EAC9FF85FFD3F520FB68700BA6E6" box="[794,807,1159,1180]" italics="true" pageId="4" pageNumber="45">p</emphasis>
|
||||
= 0.0243).
|
||||
</paragraph>
|
||||
<paragraph id="8A5F36DBFF85FFD3F520FB0E7658A684" blockId="4.[794,1396,1249,1278]" box="[794,1396,1249,1278]" pageId="4" pageNumber="45">
|
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<emphasis id="B894EAC9FF85FFD3F520FB0E7658A684" bold="true" box="[794,1396,1249,1278]" pageId="4" pageNumber="45">
|
||||
3.3 Phylogenetic analysis of
|
||||
<emphasis id="B894EAC9FF85FFD3F292FB0E77F0A684" bold="true" box="[1192,1244,1249,1278]" italics="true" pageId="4" pageNumber="45">gltA</emphasis>
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||||
sequences
|
||||
</emphasis>
|
||||
</paragraph>
|
||||
<paragraph id="8A5F36DBFF85FFD1F520FAC377B9A5FA" blockId="4.[794,1422,1323,1553]" lastBlockId="6.[794,1421,1760,1920]" lastPageId="6" lastPageNumber="47" pageId="4" pageNumber="45">
|
||||
Out of 49
|
||||
<taxonomicName id="4DE04D58FF85FFD3F5BCFAC47700A73B" authority="DNA" authorityName="DNA" box="[902,1068,1323,1345]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="4" pageNumber="45" phylum="Proteobacteria" rank="genus">
|
||||
<emphasis id="B894EAC9FF85FFD3F5BCFAC470DFA73A" box="[902,1011,1323,1344]" italics="true" pageId="4" pageNumber="45">Bartonella</emphasis>
|
||||
DNA
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||||
</taxonomicName>
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||||
confirmed by sequencing, 22 sequences were recovered, however, only 16 consensus sequences were successfully assembled. After being submitted to BLAST in the NCBI database, seven sequences; five from mites’ pools and two from fleas’ pools showed low similarities (75–85 %) when compared to other
|
||||
<taxonomicName id="4DE04D58FF85FFD3F288FA377663A794" box="[1202,1359,1496,1518]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="4" pageNumber="45" phylum="Proteobacteria" rank="species" species="undetermined">
|
||||
<emphasis id="B894EAC9FF85FFD3F288FA377633A797" box="[1202,1311,1496,1517]" italics="true" pageId="4" pageNumber="45">Bartonella</emphasis>
|
||||
spp.
|
||||
</taxonomicName>
|
||||
in the GenBank database. Therefore, only nine DNA sequences were submitted and accepted to the GenBank database (NCBI) with accession numbers (OQ382888-OQ382892 and OQ504174-OQ504177). The phylogenetic tree of the
|
||||
<taxonomicName id="4DE04D58FF84FFD2F496FA1C7035A472" box="[684,793,1523,1544]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="42" phylum="Proteobacteria" rank="genus">
|
||||
<emphasis id="B894EAC9FF84FFD2F496FA1C7035A472" box="[684,793,1523,1544]" italics="true" pageId="5" pageNumber="46">Bartonella</emphasis>
|
||||
</taxonomicName>
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||||
sequences and the previous identified
|
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<taxonomicName id="4DE04D58FF84FFD2F406F9F97036A456" box="[572,794,1558,1580]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="47" phylum="Proteobacteria" rank="species" species="genotypes">
|
||||
<emphasis id="B894EAC9FF84FFD2F406F9F97185A451" box="[572,681,1558,1579]" italics="true" pageId="5" pageNumber="46">Bartonella</emphasis>
|
||||
genotypes
|
||||
</taxonomicName>
|
||||
retrieved from the NCBI GeneBank were used to evaluate the evolutionary relationship (
|
||||
<figureCitation id="12DB2A5EFF84FFD2F787F9B47139A40A" box="[445,533,1627,1649]" captionStart="Figure 4" captionStartId="6.[1018,1076,539,558]" captionTargetBox="[139,985,197,901]" captionTargetId="figure-80@6.[136,988,191,904]" captionTargetPageId="6" captionText="Figure 4: Phylogenetic tree showing the relatedness of the Bartonella gltA gene sequences detected from rodents and shrews ectoparasites; fleas (FTZ), lice (LTZ), and ticks (TTZ) along with reference sequences from the GenBank database. The phylogenetic tree was constructed using the maximum likelihood method. The tree with the highest log likelihood (−1773.15) is shown. Evolutionary analyses were conducted in MEGA 11 (2021). The detected Bartonella genotypes and their sources in this study are indicated by nodes of different colors." figureDoi="http://doi.org/10.5281/zenodo.13913768" httpUri="https://zenodo.org/record/13913768/files/figure.png" pageId="5" pageNumber="46">Figure 4</figureCitation>
|
||||
). Based on the maximum likelihood phylogeny and reference sequences of the
|
||||
<emphasis id="B894EAC9FF84FFD2F4D5F991723FA4CF" italics="true" pageId="5" pageNumber="46">
|
||||
gltA
|
||||
<taxonomicName id="4DE04D58FF84FFD2F69CF94F723FA4CF" box="[166,275,1696,1717]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="42" phylum="Proteobacteria" rank="genus">Bartonella</taxonomicName>
|
||||
</emphasis>
|
||||
gene obtained from the GenBank database; phylogenetic analysis identified one
|
||||
<taxonomicName id="4DE04D58FF84FFD2F40CF92C71E6A4A2" box="[566,714,1731,1752]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="46" phylum="Proteobacteria" rank="species" species="elizabethae">
|
||||
<emphasis id="B894EAC9FF84FFD2F40CF92C71E6A4A2" box="[566,714,1731,1752]" italics="true" pageId="5" pageNumber="46">B. elizabethae</emphasis>
|
||||
</taxonomicName>
|
||||
(accession number OQ504174) from
|
||||
<taxonomicName id="4DE04D58FF84FFD2F7D5F90A71CCA480" baseAuthorityName="Baker" baseAuthorityYear="1904" box="[495,736,1765,1786]" class="Insecta" family="Pulicidae" genus="Xenopsylla" kingdom="Animalia" order="Siphonaptera" pageId="5" pageNumber="46" phylum="Arthropoda" rank="species" species="brasiliensis">
|
||||
<emphasis id="B894EAC9FF84FFD2F7D5F90A71CCA480" box="[495,736,1765,1786]" italics="true" pageId="5" pageNumber="46">Xenopsylla brasiliensis</emphasis>
|
||||
</taxonomicName>
|
||||
with 98.71 % similar to previously identified
|
||||
<taxonomicName id="4DE04D58FF84FFD2F477F8E771F2A567" box="[589,734,1800,1821]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="46" phylum="Proteobacteria" rank="species" species="elizabethae">
|
||||
<emphasis id="B894EAC9FF84FFD2F477F8E771F2A567" box="[589,734,1800,1821]" italics="true" pageId="5" pageNumber="46">B. elizabethae</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="F2F7764BFF84FFD2F69CF8C57228A53A" box="[166,260,1834,1856]" name="Thailand" pageId="5" pageNumber="46">Thailand</collectingCountry>
|
||||
with accession number JX158353.1.
|
||||
<taxonomicName id="4DE04D58FF84FFD2F4B8F8C57039A53A" box="[642,789,1834,1856]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="46" phylum="Proteobacteria" rank="species" species="undetermined">
|
||||
<emphasis id="B894EAC9FF84FFD2F4B8F8C571C3A545" box="[642,751,1834,1855]" italics="true" pageId="5" pageNumber="46">Bartonella</emphasis>
|
||||
sp.
|
||||
</taxonomicName>
|
||||
, with accession number OQ
|
||||
<quantity id="4D189B3EFF84FFD2F7FDF8A37105A519" box="[455,553,1868,1891]" metricMagnitude="4" metricUnit="m" metricValue="1.28060958" pageId="5" pageNumber="46" unit="in" value="504177.0">504177 in</quantity>
|
||||
this study, is phylogenetically related to
|
||||
<taxonomicName id="4DE04D58FF84FFD2F745F89F713FA5FE" box="[383,531,1903,1925]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="46" phylum="Proteobacteria" rank="species" species="tribocorum">
|
||||
<emphasis id="B894EAC9FF84FFD2F745F89F713FA5FE" box="[383,531,1903,1925]" italics="true" pageId="5" pageNumber="46">B. tribocorum</emphasis>
|
||||
</taxonomicName>
|
||||
with accession number OP382454.1 previously identified from
|
||||
<collectingCountry id="F2F7764BFF84FFD2F2F2FA417624A7BE" box="[1224,1288,1454,1476]" name="China" pageId="5" pageNumber="46">China</collectingCountry>
|
||||
. Five genotypes with accession numbers OQ382891; OQ382888; OQ382889; OQ382890 and OQ382892 from flea species (
|
||||
<taxonomicName id="4DE04D58FF84FFD2F307FA1C70ABA451" authorityName="Jordan & Rothschild" authorityYear="1913" class="Insecta" family="Homotomidae" genus="Dinopsylla" kingdom="Animalia" order="Hemiptera" pageId="5" pageNumber="46" phylum="Arthropoda" rank="species" species="lypusus">
|
||||
<emphasis id="B894EAC9FF84FFD2F307FA1C70ABA451" italics="true" pageId="5" pageNumber="46">Dinopsylla lypusus</emphasis>
|
||||
</taxonomicName>
|
||||
, and
|
||||
<taxonomicName id="4DE04D58FF84FFD2F584F9F977E2A451" authorityName="Waterston" authorityYear="1912" box="[958,1230,1558,1579]" class="Insecta" family="Hystrichopsyllidae" genus="Ctenophthalmus" kingdom="Animalia" order="Siphonaptera" pageId="5" pageNumber="46" phylum="Arthropoda" rank="species" species="calceatus">
|
||||
<emphasis id="B894EAC9FF84FFD2F584F9F977E2A451" box="[958,1230,1558,1579]" italics="true" pageId="5" pageNumber="46">Ctenophthalmus calceatus</emphasis>
|
||||
</taxonomicName>
|
||||
) were closely related to Ugandan and Kenyan
|
||||
<taxonomicName id="4DE04D58FF84FFD2F262F9D777D2A434" box="[1112,1278,1592,1614]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="46" phylum="Proteobacteria" rank="species" species="undetermined">
|
||||
<emphasis id="B894EAC9FF84FFD2F262F9D777E9A437" box="[1112,1221,1592,1613]" italics="true" pageId="5" pageNumber="46">Bartonella</emphasis>
|
||||
spp.
|
||||
</taxonomicName>
|
||||
with accession numbers JX428746.1, MF443361.1, and KM233491.1 with more than 99 % identity from blasting. Phylogenetically, Ugandan and Kenyan
|
||||
<taxonomicName id="4DE04D58FF84FFD2F581F94F77B8A4CC" box="[955,1172,1696,1718]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="46" phylum="Proteobacteria" rank="species" species="genotypes">
|
||||
<emphasis id="B894EAC9FF84FFD2F581F94F77B8A4CC" box="[955,1172,1696,1718]" italics="true" pageId="5" pageNumber="46">Bartonella genotypes</emphasis>
|
||||
</taxonomicName>
|
||||
were closely related to the South African
|
||||
<taxonomicName id="4DE04D58FF84FFD2F5EFF92C779AA4A2" box="[981,1206,1731,1752]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="47" phylum="Proteobacteria" rank="species" species="genotypes">
|
||||
<emphasis id="B894EAC9FF84FFD2F5EFF92C776EA4A2" box="[981,1090,1731,1752]" italics="true" pageId="5" pageNumber="46">Bartonella</emphasis>
|
||||
genotypes
|
||||
</taxonomicName>
|
||||
with GeneBank accession number AJ583114.1 as described in
|
||||
<figureCitation id="12DB2A5EFF84FFD2F2E1F90A7618A480" box="[1243,1332,1765,1787]" captionStart="Figure 4" captionStartId="6.[1018,1076,539,558]" captionTargetBox="[139,985,197,901]" captionTargetId="figure-80@6.[136,988,191,904]" captionTargetPageId="6" captionText="Figure 4: Phylogenetic tree showing the relatedness of the Bartonella gltA gene sequences detected from rodents and shrews ectoparasites; fleas (FTZ), lice (LTZ), and ticks (TTZ) along with reference sequences from the GenBank database. The phylogenetic tree was constructed using the maximum likelihood method. The tree with the highest log likelihood (−1773.15) is shown. Evolutionary analyses were conducted in MEGA 11 (2021). The detected Bartonella genotypes and their sources in this study are indicated by nodes of different colors." figureDoi="http://doi.org/10.5281/zenodo.13913768" httpUri="https://zenodo.org/record/13913768/files/figure.png" pageId="5" pageNumber="46">Figure 4</figureCitation>
|
||||
.
|
||||
<taxonomicName id="4DE04D58FF84FFD2F304F90A7687A480" box="[1342,1451,1765,1786]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="42" phylum="Proteobacteria" rank="genus">
|
||||
<emphasis id="B894EAC9FF84FFD2F304F90A7687A480" box="[1342,1451,1765,1786]" italics="true" pageId="5" pageNumber="46">Bartonella</emphasis>
|
||||
</taxonomicName>
|
||||
genotype from lice (OQ504175) phylogenetically is related to JX428760.1 from
|
||||
<collectingCountry id="F2F7764BFF84FFD2F5D0F8C57716A53A" box="[1002,1082,1834,1856]" name="Uganda" pageId="5" pageNumber="46">Uganda</collectingCountry>
|
||||
and is closely related to genotype FJ686050.1 from
|
||||
<collectingCountry id="F2F7764BFF84FFD2F5DDF8A2770FA519" box="[999,1059,1869,1891]" name="Israel" pageId="5" pageNumber="46">Israel</collectingCountry>
|
||||
with 98.89 % similarity to
|
||||
<taxonomicName id="4DE04D58FF84FFD2F304F8A27083A5FE" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="5" pageNumber="46" phylum="Proteobacteria" rank="species" species="elizabathae">
|
||||
<emphasis id="B894EAC9FF84FFD2F304F8A27083A5FE" italics="true" pageId="5" pageNumber="46">Bartonella elizabathae</emphasis>
|
||||
</taxonomicName>
|
||||
with accession number LR134527.1 from the GenBank database.
|
||||
<taxonomicName id="4DE04D58FF87FFD1F758F90F72E3A48F" box="[354,463,1760,1781]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="6" pageNumber="42" phylum="Proteobacteria" rank="genus">
|
||||
<emphasis id="B894EAC9FF87FFD1F758F90F72E3A48F" box="[354,463,1760,1781]" italics="true" pageId="6" pageNumber="47">Bartonella</emphasis>
|
||||
</taxonomicName>
|
||||
genotype (OQ504176) from
|
||||
<emphasis id="B894EAC9FF87FFD1F6B2F8EC720EA562" box="[136,290,1795,1816]" italics="true" pageId="6" pageNumber="47">Haemophisalis</emphasis>
|
||||
tick detected in this study showed 98.94 % similarity to
|
||||
<taxonomicName id="4DE04D58FF87FFD1F71EF8CA72BDA540" box="[292,401,1829,1850]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="6" pageNumber="42" phylum="Proteobacteria" rank="genus">
|
||||
<emphasis id="B894EAC9FF87FFD1F71EF8CA72BDA540" box="[292,401,1829,1850]" italics="true" pageId="6" pageNumber="47">Bartonella</emphasis>
|
||||
</taxonomicName>
|
||||
strain with accession number AJ583115.1 from
|
||||
<collectingCountry id="F2F7764BFF87FFD1F705F8A772E7A524" box="[319,459,1864,1886]" name="South Africa" pageId="6" pageNumber="47">South Africa</collectingCountry>
|
||||
. Furthermore, the Medianjoining network (
|
||||
<figureCitation id="12DB2A5EFF87FFD1F705F88572B9A5FA" box="[319,405,1897,1920]" captionStart="Figure 5" captionStartId="6.[136,194,1655,1674]" captionTargetBox="[139,1280,968,1615]" captionTargetId="figure-165@6.[136,1283,965,1616]" captionTargetPageId="6" captionText="Figure 5: Median-joining network showing the evolutionary relationships and likely ancestral networks among Bartonella haplotypes based on the 379-bp sequence of gltA gene from fleas (FTZ), ticks (TTZ), and lice (LTZ) hosts." figureDoi="http://doi.org/10.5281/zenodo.13913770" httpUri="https://zenodo.org/record/13913770/files/figure.png" pageId="6" pageNumber="47">Figure 5</figureCitation>
|
||||
) showed five clades, among them four clades form different clusters, with different lineages and unique haplotypes. Five genotypes related to
|
||||
<taxonomicName id="4DE04D58FF87FFD1F31AF8EC7069A541" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="6" pageNumber="47" phylum="Proteobacteria" rank="species" species="undetermined">
|
||||
<emphasis id="B894EAC9FF87FFD1F31AF8EC76A1A562" box="[1312,1421,1795,1816]" italics="true" pageId="6" pageNumber="47">Bartonella</emphasis>
|
||||
spp.
|
||||
</taxonomicName>
|
||||
discovered in Ugandan, Kenyan and South African
|
||||
<taxonomicName id="4DE04D58FF87FFD1F520F8A77095A527" box="[794,953,1864,1885]" class="Alphaproteobacteria" family="Bartonellaceae" genus="Bartonella" kingdom="Bacteria" order="Rhizobiales" pageId="6" pageNumber="47" phylum="Proteobacteria" rank="species" species="undetermined">
|
||||
<emphasis id="B894EAC9FF87FFD1F520F8A770ABA527" box="[794,903,1864,1885]" italics="true" pageId="6" pageNumber="47">Bartonella</emphasis>
|
||||
spp.
|
||||
</taxonomicName>
|
||||
formed one haplogroup/clade, different lineages with independent haplotypes.
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
Loading…
Reference in a new issue