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<document id="A4B2B2346A6FB30E0F524076E19FA528" ID-DOI="10.11646/phytotaxa.659.1.1" ID-ISSN="1179-3163" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.tables_requiresApprovalFor="GgImagineBatch" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722614285088" checkinUser="felipe" docAuthor="Rana, Shiwali & Singh, Sanjay K." docDate="2024" docId="F03A87F3D175FFBFFF61E90B5615F3E6" docLanguage="en" docName="phytotaxa.659.1.1.pdf" docOrigin="Phytotaxa 659 (1)" docSource="http://dx.doi.org/10.11646/phytotaxa.659.1.1" docStyle="DocumentStyle:96748F8F1B6C902996E134952A3A36B9.13:Phytotaxa.2014-.journal_article" docStyleId="96748F8F1B6C902996E134952A3A36B9" docStyleName="Phytotaxa.2014-.journal_article" docStyleVersion="13" docTitle="Fusarium kamalianum S. Rana, and S. K. Singh, sp. nov." docType="treatment" docVersion="1" lastPageNumber="17" masterDocId="0C03FF8BD17BFFAFFFE9EB37527EF522" masterDocTitle="Fusarium kamalianum, a new species of Fusarium from India from ornamental Chamaedorea seifrizii" masterLastPageNumber="23" masterPageNumber="1" pageNumber="15" updateTime="1722803555609" updateUser="felipe" zenodo-license-figures="UNSPECIFIED" zenodo-license-treatments="UNSPECIFIED">
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<mods:title id="0EB726E96E6BB3FB4C7FC7D604EC3A90">Fusarium kamalianum, a new species of Fusarium from India from ornamental Chamaedorea seifrizii</mods:title>
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<mods:title id="059BE15066DE970E1FFC57B4C26E6FA5">Fusarium kamalianum, a new species of Fusarium from India from ornamental Chamaedorea seifrizii</mods:title>
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<mods:namePart id="D0F8FB23392DA52FC9B76AAEF757BBB5">Rana, Shiwali</mods:namePart>
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<mods:nameIdentifier id="85DC1BC70FD122E4D3DF18295697888D" type="ORCID">0000-0002-7362-2877</mods:nameIdentifier>
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<mods:affiliation id="910E5354B6D4EF07AEA54A790F9E7CEB">National Fungal Culture Collection of India, Biodiversity and Palaeobiology Group, MACS’ Agharkar Research Institute, G. G. Agarkar Road, Pune 411004, India</mods:affiliation>
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<mods:nameIdentifier id="24E96799623BAFD94B7600A48DE53B5B" type="email">shiwalirana@aripune.org</mods:nameIdentifier>
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<mods:namePart id="6E88BC966BBF68FE9D6E55935FAC7F81">Rana, Shiwali</mods:namePart>
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<mods:affiliation id="AA3883A49C69E5BF169A3BBAA3C3CCFD">National Fungal Culture Collection of India, Biodiversity and Palaeobiology Group, MACS’ Agharkar Research Institute, G. G. Agarkar Road, Pune 411004, India</mods:affiliation>
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<mods:namePart id="14004D553C5BAFA8B3C97AA7F480AACB">Singh, Sanjay K.</mods:namePart>
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<mods:nameIdentifier id="F2477D59166BA0F9AD36DB806E06BAA1" type="ORCID">0000-0002-6329-630X</mods:nameIdentifier>
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<mods:affiliation id="E3CFCA9DEDC889CD2B5E9AC8684A4AC1">National Fungal Culture Collection of India, Biodiversity and Palaeobiology Group, MACS’ Agharkar Research Institute, G. G. Agarkar Road, Pune 411004, India</mods:affiliation>
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<mods:nameIdentifier id="9A6D5C4A7D79C83558ED7921E8A6F0D2" type="email">sksingh@aripune.org</mods:nameIdentifier>
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<mods:namePart id="8D83362F43FFFD4CA6808141A42D77D9">Singh, Sanjay K.</mods:namePart>
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<mods:affiliation id="12E9BDB1182EEDB63D0BFC2295C29742">National Fungal Culture Collection of India, Biodiversity and Palaeobiology Group, MACS’ Agharkar Research Institute, G. G. Agarkar Road, Pune 411004, India</mods:affiliation>
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<mods:nameIdentifier id="99BC65B2A0FDE0D7E3CF7E41E9E3F8EC" type="email">sksingh@aripune.org</mods:nameIdentifier>
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<treatment id="F03A87F3D175FFBFFF61E90B5615F3E6" LSID="urn:lsid:plazi:treatment:F03A87F3D175FFBFFF61E90B5615F3E6" httpUri="http://treatment.plazi.org/id/F03A87F3D175FFBFFF61E90B5615F3E6" lastPageId="16" lastPageNumber="17" pageId="14" pageNumber="15">
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@ -61,7 +62,7 @@ S. Rana, and S.K. Singh
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<emphasis id="4AE7EAF7D175FFA1FD58E90A5178F774" box="[689,774,573,598]" italics="true" pageId="14" pageNumber="15">
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<taxonomicNameLabel id="51D4578CD175FFA1FD58E90A5178F774" box="[689,774,573,598]" pageId="14" pageNumber="15" rank="species">sp. nov.</taxonomicNameLabel>
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</emphasis>
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<figureCitation id="E0A82A60D175FFA1FCE5E90B51EAF774" box="[780,916,572,598]" captionStart-0="FIGURE 2" captionStart-1="FIGURE 3" captionStartId-0="14.[136,229,1986,2008]" captionStartId-1="15.[136,229,1868,1890]" captionTargetBox-0="[321,1264,1524,1958]" captionTargetBox-1="[167,1421,203,1831]" captionTargetId-0="figure-414@14.[318,1270,1523,1962]" captionTargetId-1="figure-19@15.[154,1434,190,1844]" captionTargetPageId-0="14" captionTargetPageId-1="15" captionText-0="FIGURE 2. A. Rotted stem of Chamaedorea seifrizii (Bamboo palm); B. Wilted leaf of Chamaedorea seifrizii (Bamboo palm); C. In vitro culture of the pathogen of Chamaedorea seifrizii (F. kamalianum) on PDA; Pure colony of F. kamalianum growing on PDA after a week; D. Front view; F. Reverse view; E. Pure colony of F. kamalianum growing on SNA." captionText-1="FIGURE 3. Morphological characters of Fusarium kamalianum NFCCI 5154. A–C. Microconidia on simple, long slender phialides; D. Branched phialides bearing microconidia; E. Elongate microconidia in the false head; F. Solitary monophialides; G, H. Smooth to rough walled chlamydospores; I. Coiled mycelia bearing phialides; J, K. Microconidia; L. Micro and macroconidia.—Scale bars: A–F, I-J = 20 µm, G, H, K, L = 10 µm." pageId="14" pageNumber="15">Figures 2–3</figureCitation>
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<figureCitation id="E0A82A60D175FFA1FCE5E90B51EAF774" box="[780,916,572,598]" captionStart-0="FIGURE 2" captionStart-1="FIGURE 3" captionStartId-0="14.[136,229,1986,2008]" captionStartId-1="15.[136,229,1868,1890]" captionTargetBox-0="[321,1264,1524,1958]" captionTargetBox-1="[167,1421,203,1831]" captionTargetId-0="figure-414@14.[318,1270,1523,1962]" captionTargetId-1="figure-19@15.[154,1434,190,1844]" captionTargetPageId-0="14" captionTargetPageId-1="15" captionText-0="FIGURE 2. A. Rotted stem of Chamaedorea seifrizii (Bamboo palm); B. Wilted leaf of Chamaedorea seifrizii (Bamboo palm); C. In vitro culture of the pathogen of Chamaedorea seifrizii (F. kamalianum) on PDA; Pure colony of F. kamalianum growing on PDA after a week; D. Front view; F. Reverse view; E. Pure colony of F. kamalianum growing on SNA." captionText-1="FIGURE 3. Morphological characters of Fusarium kamalianum NFCCI 5154. A–C. Microconidia on simple, long slender phialides; D. Branched phialides bearing microconidia; E. Elongate microconidia in the false head; F. Solitary monophialides; G, H. Smooth to rough walled chlamydospores; I. Coiled mycelia bearing phialides; J, K. Microconidia; L. Micro and macroconidia.—Scale bars: A–F, I-J = 20 µm, G, H, K, L = 10 µm." figureDoi-0="http://doi.org/10.5281/zenodo.13217750" figureDoi-1="http://doi.org/10.5281/zenodo.13217752" httpUri-0="https://zenodo.org/record/13217750/files/figure.png" httpUri-1="https://zenodo.org/record/13217752/files/figure.png" pageId="14" pageNumber="15">Figures 2–3</figureCitation>
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.
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</heading>
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</paragraph>
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@ -146,7 +147,7 @@ after four days of incubation at 25°
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<collectingCountry id="00847675D175FFA1FD73EEF750A9F0F8" box="[666,727,1472,1498]" name="India" pageId="14" pageNumber="15">India</collectingCountry>
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.
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</paragraph>
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<caption id="2CEC666DD175FFA1FF61ECF551CFFD02" pageId="14" pageNumber="15" startId="14.[136,229,1986,2008]" targetBox="[321,1264,1524,1958]" targetPageId="14" targetType="figure">
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<caption id="2CEC666DD175FFA1FF61ECF551CFFD02" ID-DOI="http://doi.org/10.5281/zenodo.13217750" ID-Zenodo-Dep="13217750" httpUri="https://zenodo.org/record/13217750/files/figure.png" pageId="14" pageNumber="15" startId="14.[136,229,1986,2008]" targetBox="[321,1264,1524,1958]" targetPageId="14" targetType="figure">
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<paragraph id="782C36E5D175FFA1FF61ECF551CFFD02" blockId="14.[136,1452,1986,2081]" pageId="14" pageNumber="15">
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<emphasis id="4AE7EAF7D175FFA1FF61ECF55289F2FA" bold="true" box="[136,247,1986,2008]" pageId="14" pageNumber="15">FIGURE 2</emphasis>
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. A. Rotted stem of
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@ -182,7 +183,7 @@ growing on PDA after a week; D. Front view; F. Reverse view; E. Pure colony of
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growing on SNA.
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</paragraph>
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</caption>
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<caption id="2CEC666DD174FFA0FF61EC7B5307F2EC" pageId="15" pageNumber="16" startId="15.[136,229,1868,1890]" targetBox="[167,1421,203,1831]" targetPageId="15" targetType="figure">
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<caption id="2CEC666DD174FFA0FF61EC7B5307F2EC" ID-DOI="http://doi.org/10.5281/zenodo.13217752" ID-Zenodo-Dep="13217752" httpUri="https://zenodo.org/record/13217752/files/figure.png" pageId="15" pageNumber="16" startId="15.[136,229,1868,1890]" targetBox="[167,1421,203,1831]" targetPageId="15" targetType="figure">
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<paragraph id="782C36E5D174FFA0FF61EC7B5307F2EC" blockId="15.[136,1452,1868,1998]" pageId="15" pageNumber="16">
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<emphasis id="4AE7EAF7D174FFA0FF61EC7B5286F243" bold="true" box="[136,248,1868,1890]" pageId="15" pageNumber="16">FIGURE 3</emphasis>
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. Morphological characters of
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@ -457,7 +458,7 @@ were compared, the concatenated file contained sequence data with 33283 columns,
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, and
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<emphasis id="4AE7EAF7D16BFFBFFC0DEF855668F1EE" box="[996,1046,1202,1228]" italics="true" pageId="16" pageNumber="17">tub2</emphasis>
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respectively. The partition-specific rates were 2.160, 1.076, 0.601, 0.165, and 0.989. Based on the above model, the phylogeny was carried out using the Maximum Likelihood Method. The log-likelihood of the consensus tree was -27073.797 (
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<figureCitation id="E0A82A60D16BFFBFFB61EFCD5693F036" box="[1160,1261,1274,1300]" captionStart="FIGURE 4" captionStartId="17.[136,229,1946,1968]" captionTargetBox="[151,1435,751,1915]" captionTargetId="figure-357@17.[151,1435,749,1921]" captionTargetPageId="17" captionText="FIGURE 4. Molecular phylogenetic analysis of new species, Fusarium kamalianum, generated by maximum-likelihood (ML) method based on combined ITS, LSU, tef-1α, rpb2, and tub2 sequence data. Different species complexes of Fusarium were used in the study to figure out the taxonomic position of F. kamalianum. The new species, Fusarium kamalianum, is represented in blue bold." pageId="16" pageNumber="17">Figure 4</figureCitation>
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<figureCitation id="E0A82A60D16BFFBFFB61EFCD5693F036" box="[1160,1261,1274,1300]" captionStart="FIGURE 4" captionStartId="17.[136,229,1946,1968]" captionTargetBox="[151,1435,751,1915]" captionTargetId="figure-357@17.[151,1435,749,1921]" captionTargetPageId="17" captionText="FIGURE 4. Molecular phylogenetic analysis of new species, Fusarium kamalianum, generated by maximum-likelihood (ML) method based on combined ITS, LSU, tef-1α, rpb2, and tub2 sequence data. Different species complexes of Fusarium were used in the study to figure out the taxonomic position of F. kamalianum. The new species, Fusarium kamalianum, is represented in blue bold." figureDoi="http://doi.org/10.5281/zenodo.13217754" httpUri="https://zenodo.org/record/13217754/files/figure.png" pageId="16" pageNumber="17">Figure 4</figureCitation>
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). For the second phylogenetic tree, which majorly consisted of the species belonging to the
|
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<taxonomicName id="BF934D66D16BFFBFFC24EE2856C2F01A" box="[973,1212,1311,1336]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="16" pageNumber="17" phylum="Ascomycota" rank="species" species="oxysporum">
|
||||
<emphasis id="4AE7EAF7D16BFFBFFC24EE2856C2F01A" box="[973,1212,1311,1336]" italics="true" pageId="16" pageNumber="17">Fusarium oxysporum</emphasis>
|
||||
|
|
@ -499,7 +500,7 @@ were the best models selected for
|
|||
, and
|
||||
<emphasis id="4AE7EAF7D16BFFBFFDEAEEBD504BF086" box="[515,565,1418,1444]" italics="true" pageId="16" pageNumber="17">tub2</emphasis>
|
||||
respectively. The partition-specific rates were 2.039, 0.867, 0.560, 0.522, and 1.031. The phylogeny was carried out using the maximum likelihood method based on the above model mentioned. The log-likelihood of the consensus tree was -6767.498 (
|
||||
<figureCitation id="E0A82A60D16BFFBFFCEFEEE55116F0CF" box="[774,872,1490,1517]" captionStart="FIGURE 5" captionStartId="18.[136,229,1215,1237]" captionTargetBox="[151,1435,190,1184]" captionTargetId="figure-23@18.[151,1435,190,1190]" captionTargetPageId="18" captionText="FIGURE 5. Molecular phylogenetic analysis of new species, Fusarium kamalianum generated by maximum-likelihood (ML) method based on combined ITS, LSU, tef-1α, rpb2, and tub2 sequence data. Isolates majorly belonging to Fusarium oxysporum species complex were used in the construction of the phylogenetic tree. The statistical support values are shown next to each node, UFBS, and SH-aLRT produced from 1000 replicates using IQ-TREE. The new species, Fusarium kamalianum is represented in blue bold." pageId="16" pageNumber="17">Figure 5</figureCitation>
|
||||
<figureCitation id="E0A82A60D16BFFBFFCEFEEE55116F0CF" box="[774,872,1490,1517]" captionStart="FIGURE 5" captionStartId="18.[136,229,1215,1237]" captionTargetBox="[151,1435,190,1184]" captionTargetId="figure-23@18.[151,1435,190,1190]" captionTargetPageId="18" captionText="FIGURE 5. Molecular phylogenetic analysis of new species, Fusarium kamalianum generated by maximum-likelihood (ML) method based on combined ITS, LSU, tef-1α, rpb2, and tub2 sequence data. Isolates majorly belonging to Fusarium oxysporum species complex were used in the construction of the phylogenetic tree. The statistical support values are shown next to each node, UFBS, and SH-aLRT produced from 1000 replicates using IQ-TREE. The new species, Fusarium kamalianum is represented in blue bold." figureDoi="http://doi.org/10.5281/zenodo.13217756" httpUri="https://zenodo.org/record/13217756/files/figure.png" pageId="16" pageNumber="17">Figure 5</figureCitation>
|
||||
). Tree branches were tested based on 1000 ultrafast bootstrap support replicates (UFBoot) and with an SH-like approximate likelihood ratio test (SH-like aLRT) with 1000 replicates. The combined phylogenetic tree generated using
|
||||
<collectionCode id="1E82AE20D16BFFBFFCD0ED2D5118F316" box="[825,870,1562,1588]" pageId="16" pageNumber="17">ITS</collectionCode>
|
||||
,
|
||||
|
|
@ -519,9 +520,9 @@ under
|
|||
<emphasis id="4AE7EAF7D16BFFBFFB8DED08572DF37A" box="[1124,1363,1599,1624]" italics="true" pageId="16" pageNumber="17">Fusarium oxysporum</emphasis>
|
||||
</taxonomicName>
|
||||
species complex supported with good SH-like aLRT, and ultrafast bootstrap (UFBoot) (
|
||||
<figureCitation id="E0A82A60D16BFFBFFBEAED55561BF35E" box="[1027,1125,1634,1660]" captionStart="FIGURE 4" captionStartId="17.[136,229,1946,1968]" captionTargetBox="[151,1435,751,1915]" captionTargetId="figure-357@17.[151,1435,749,1921]" captionTargetPageId="17" captionText="FIGURE 4. Molecular phylogenetic analysis of new species, Fusarium kamalianum, generated by maximum-likelihood (ML) method based on combined ITS, LSU, tef-1α, rpb2, and tub2 sequence data. Different species complexes of Fusarium were used in the study to figure out the taxonomic position of F. kamalianum. The new species, Fusarium kamalianum, is represented in blue bold." pageId="16" pageNumber="17">Figure 4</figureCitation>
|
||||
<figureCitation id="E0A82A60D16BFFBFFBEAED55561BF35E" box="[1027,1125,1634,1660]" captionStart="FIGURE 4" captionStartId="17.[136,229,1946,1968]" captionTargetBox="[151,1435,751,1915]" captionTargetId="figure-357@17.[151,1435,749,1921]" captionTargetPageId="17" captionText="FIGURE 4. Molecular phylogenetic analysis of new species, Fusarium kamalianum, generated by maximum-likelihood (ML) method based on combined ITS, LSU, tef-1α, rpb2, and tub2 sequence data. Different species complexes of Fusarium were used in the study to figure out the taxonomic position of F. kamalianum. The new species, Fusarium kamalianum, is represented in blue bold." figureDoi="http://doi.org/10.5281/zenodo.13217754" httpUri="https://zenodo.org/record/13217754/files/figure.png" pageId="16" pageNumber="17">Figure 4</figureCitation>
|
||||
,
|
||||
<figureCitation id="E0A82A60D16BFFBFFB98ED5556FFF35F" box="[1137,1153,1634,1661]" captionStart="FIGURE 5" captionStartId="18.[136,229,1215,1237]" captionTargetBox="[151,1435,190,1184]" captionTargetId="figure-23@18.[151,1435,190,1190]" captionTargetPageId="18" captionText="FIGURE 5. Molecular phylogenetic analysis of new species, Fusarium kamalianum generated by maximum-likelihood (ML) method based on combined ITS, LSU, tef-1α, rpb2, and tub2 sequence data. Isolates majorly belonging to Fusarium oxysporum species complex were used in the construction of the phylogenetic tree. The statistical support values are shown next to each node, UFBS, and SH-aLRT produced from 1000 replicates using IQ-TREE. The new species, Fusarium kamalianum is represented in blue bold." pageId="16" pageNumber="17">5</figureCitation>
|
||||
<figureCitation id="E0A82A60D16BFFBFFB98ED5556FFF35F" box="[1137,1153,1634,1661]" captionStart="FIGURE 5" captionStartId="18.[136,229,1215,1237]" captionTargetBox="[151,1435,190,1184]" captionTargetId="figure-23@18.[151,1435,190,1190]" captionTargetPageId="18" captionText="FIGURE 5. Molecular phylogenetic analysis of new species, Fusarium kamalianum generated by maximum-likelihood (ML) method based on combined ITS, LSU, tef-1α, rpb2, and tub2 sequence data. Isolates majorly belonging to Fusarium oxysporum species complex were used in the construction of the phylogenetic tree. The statistical support values are shown next to each node, UFBS, and SH-aLRT produced from 1000 replicates using IQ-TREE. The new species, Fusarium kamalianum is represented in blue bold." figureDoi="http://doi.org/10.5281/zenodo.13217756" httpUri="https://zenodo.org/record/13217756/files/figure.png" pageId="16" pageNumber="17">5</figureCitation>
|
||||
).
|
||||
</paragraph>
|
||||
<paragraph id="782C36E5D16BFFBFFF54EDB15615F3E6" blockId="16.[136,1452,1022,1733]" pageId="16" pageNumber="17">
|
||||
|
|
|
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