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<mods:title>Phylogeny and species delimitation in Silene sect. Arenosae (Caryophyllaceae): a new section</mods:title>
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<mods:title id="E34B49C2DA1FAA97C0016BDA5C7C067E">Phylogeny and species delimitation in Silene sect. Arenosae (Caryophyllaceae): a new section</mods:title>
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<mods:namePart>Eggens, Frida</mods:namePart>
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<mods:affiliation>Department of Systematic Botany, Evolutionary Biology Centre, Uppsala University, Norbyvaegen 18 D, SE- 752 36 Uppsala, Sweden</mods:affiliation>
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<mods:namePart>Jafari, Farzaneh</mods:namePart>
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<mods:namePart>Thollesson, Mikael</mods:namePart>
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<mods:namePart>Crameri, Simon</mods:namePart>
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<mods:affiliation>Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland</mods:affiliation>
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<mods:namePart>Zarre, Shahin</mods:namePart>
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<mods:affiliation>Centre of Excellence in Phylogeny of Living Organisms, and Department of Plant Science, School of Biology, College of Science, University of Tehran, 14155 - 6455, Tehran, Iran</mods:affiliation>
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<mods:namePart>Oxelman, Bengt</mods:namePart>
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<mods:affiliation>Department of Biological and Environmental Sciences, University of Gothenburg, 40530 Gothenburg, Sweden & Gothenburg Global Biodiversity Centre, University of Gothenburg, P. O. Box 461, 40530 Goeteborg, Sweden</mods:affiliation>
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<treatment ID-GBIF-Taxon="167514845" LSID="urn:lsid:plazi:treatment:30903FB01B545FDB8A5676EE140AEF9A" httpUri="http://treatment.plazi.org/id/30903FB01B545FDB8A5676EE140AEF9A" lastPageNumber="1" pageId="0" pageNumber="1">
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<treatment id="30903FB01B545FDB8A5676EE140AEF9A" ID-GBIF-Taxon="167514845" LSID="urn:lsid:plazi:treatment:30903FB01B545FDB8A5676EE140AEF9A" httpUri="http://treatment.plazi.org/id/30903FB01B545FDB8A5676EE140AEF9A" lastPageNumber="1" pageId="0" pageNumber="1" scope_family="Caryophyllaceae">
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<paragraph id="F38DFEB33BEE521557485FB84153893B" pageId="0" pageNumber="1">
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8.
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<taxonomicName LSID="30903FB0-1B54-5FDB-8A56-76EE140AEF9A" authority="Fenzl, Pug. Pl. Nov. Syr. 9. 1842." class="Magnoliopsida" family="Caryophyllaceae" genus="Silene" higherTaxonomySource="CoL" kingdom="Plantae" lsidName="Silene microsperma" order="Caryophyllales" pageId="0" pageNumber="1" phylum="Tracheophyta" rank="species" species="microsperma">Silene microsperma Fenzl, Pug. Pl. Nov. Syr. 9. 1842.</taxonomicName>
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<taxonomicName id="50116A0E44D73403AD3C78032A830F68" ID-CoL="4XCMJ" LSID="30903FB0-1B54-5FDB-8A56-76EE140AEF9A" authority="Fenzl, Pug. Pl. Nov. Syr. 9. 1842." class="Magnoliopsida" family="Caryophyllaceae" genus="Silene" higherTaxonomySource="CoL" kingdom="Plantae" lsidName="Silene microsperma" order="Caryophyllales" pageId="0" pageNumber="1" phylum="Tracheophyta" rank="species" species="microsperma">Silene microsperma Fenzl, Pug. Pl. Nov. Syr. 9. 1842.</taxonomicName>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="1" type="materials_examined">
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<paragraph pageId="0" pageNumber="1">Type.</paragraph>
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<paragraph pageId="0" pageNumber="1">See below subspecies.</paragraph>
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<subSubSection id="84C5BBC3D8F2837D8B7266C0F808C7CC" pageId="0" pageNumber="1" type="materials_examined">
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<paragraph id="0CD173AC465DABEA9125C0B7CCBAD7E7" pageId="0" pageNumber="1">Type.</paragraph>
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<paragraph id="1B47416C574ADD76A965C48E7A703329" pageId="0" pageNumber="1">See below subspecies.</paragraph>
|
||||
</subSubSection>
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<subSubSection pageId="0" pageNumber="1" type="distribution">
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<paragraph pageId="0" pageNumber="1">Distribution.</paragraph>
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<paragraph pageId="0" pageNumber="1">
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<subSubSection id="B3A2D0470E5EACB30F70A8025369B6CF" pageId="0" pageNumber="1" type="distribution">
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<paragraph id="729A0F07285FAB5AB2426209D81AB64D" pageId="0" pageNumber="1">Distribution.</paragraph>
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<paragraph id="4FF2B39365D25492BE7C2B2F2F2FDAC2" pageId="0" pageNumber="1">
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Turkey, Syria, N Iraq, Cyprus, Palestine and Lebanon (Fig.
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<figureCitation captionStart="Figure 7" captionStartId="F7" captionText="Figure 7. Distribution map of S. sect. Arenosae. Each color code corresponds to one taxon: A S. arenosa B S. austroiranica C S. chaetodonta D S. exsudans E S. georgievskyi F S. leyseroides G S. linearis H S. microsperma subsp. cypria I S. microsperma subsp. maritima J S. microsperma subsp. microsperma K S. microsperma subsp. modesta L S. striata." figureDoi="10.3897/phytokeys.159.51500.figure7" httpUri="https://binary.pensoft.net/fig/447291" pageId="0" pageNumber="1">7</figureCitation>
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<figureCitation id="50FFA801A177698F154DB5046B22909F" captionStart="Figure 7" captionStartId="F7" captionText="Figure 7. Distribution map of S. sect. Arenosae. Each color code corresponds to one taxon: A S. arenosa B S. austroiranica C S. chaetodonta D S. exsudans E S. georgievskyi F S. leyseroides G S. linearis H S. microsperma subsp. cypria I S. microsperma subsp. maritima J S. microsperma subsp. microsperma K S. microsperma subsp. modesta L S. striata." figureDoi="10.3897/phytokeys.159.51500.figure7" httpUri="https://binary.pensoft.net/fig/447291" pageId="0" pageNumber="1">7</figureCitation>
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).
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</paragraph>
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||||
</subSubSection>
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<subSubSection pageId="0" pageNumber="1" type="notes">
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||||
<paragraph pageId="0" pageNumber="1">Notes.</paragraph>
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<paragraph pageId="0" pageNumber="1">
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<subSubSection id="07700A497698C49E72F6EA8F6C5AF35F" pageId="0" pageNumber="1" type="notes">
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<paragraph id="D839A308F4307630EBF0BAA64D238879" pageId="0" pageNumber="1">Notes.</paragraph>
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||||
<paragraph id="EE9C1AF09C66349D93DDC499EAED63C6" pageId="0" pageNumber="1">
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This species is the most variable in the section and is here divided into four subspecies. We have chosen not to treat these taxa as species because they are obviously closely related, as seen by low variation in the DNA sequences. The taxon "
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<taxonomicName lsidName="S. modesta" pageId="0" pageNumber="1" rank="species" species="modesta">
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<emphasis italics="true" pageId="0" pageNumber="1">S. modesta</emphasis>
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<taxonomicName id="FB306DC1E746053AC0E514D36C4637D4" lsidName="S. modesta" pageId="0" pageNumber="1" rank="species" species="modesta">
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<emphasis id="6FBBC1E0B9F1C48B95B5BE9B4EAD811C" italics="true" pageId="0" pageNumber="1">S. modesta</emphasis>
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||||
</taxonomicName>
|
||||
" has sometimes been treated as a species (e.g.
|
||||
<bibRefCitation author="Zohary, M" journalOrPublisher="Botanical Journal of the Linnean Society" pageId="0" pageNumber="1" refId="B65" refString="Zohary, M, 1966. Flora Palaestina, vol. 1. Jerusalem, 1-496." title="Flora Palaestina, vol. 1. Jerusalem, 1 - 496." year="1966">Zohary 1966</bibRefCitation>
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<bibRefCitation id="1EFC9F54A5777BE16998B1D6C78083A5" author="Zohary, M" journalOrPublisher="Botanical Journal of the Linnean Society" pageId="0" pageNumber="1" refId="B65" refString="Zohary, M, 1966. Flora Palaestina, vol. 1. Jerusalem, 1-496." title="Flora Palaestina, vol. 1. Jerusalem, 1 - 496." year="1966">Zohary 1966</bibRefCitation>
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,
|
||||
<bibRefCitation author="Mouterde, P" journalOrPublisher="163. Akademische Druck- und Verlagsanstalt, Graz" pageId="0" pageNumber="1" refId="B37" refString="Mouterde, P, 1966. Nouvelle Flore du Liban et de la Syrie. Vol. 1. Ed. de l'imprimerie catholique, Beyrouth, 1-563." title="Nouvelle Flore du Liban et de la Syrie. Vol. 1. Ed. de l'imprimerie catholique, Beyrouth, 1 - 563." year="1966">Mouterde 1966</bibRefCitation>
|
||||
<bibRefCitation id="77E0B357927082EDE98C50305E4E20B4" author="Mouterde, P" journalOrPublisher="163. Akademische Druck- und Verlagsanstalt, Graz" pageId="0" pageNumber="1" refId="B37" refString="Mouterde, P, 1966. Nouvelle Flore du Liban et de la Syrie. Vol. 1. Ed. de l'imprimerie catholique, Beyrouth, 1-563." title="Nouvelle Flore du Liban et de la Syrie. Vol. 1. Ed. de l'imprimerie catholique, Beyrouth, 1 - 563." year="1966">Mouterde 1966</bibRefCitation>
|
||||
), but has also previously been treated as a variety of
|
||||
<taxonomicName lsidName="S. chaetodonta" pageId="0" pageNumber="1" rank="species" species="chaetodonta">
|
||||
<emphasis italics="true" pageId="0" pageNumber="1">S. chaetodonta</emphasis>
|
||||
<taxonomicName id="72F3FB761598526850BC6CC809342299" lsidName="S. chaetodonta" pageId="0" pageNumber="1" rank="species" species="chaetodonta">
|
||||
<emphasis id="7210714C5B6B4B4795AD719614A2B993" italics="true" pageId="0" pageNumber="1">S. chaetodonta</emphasis>
|
||||
</taxonomicName>
|
||||
(
|
||||
<bibRefCitation author="Post, GE" journalOrPublisher="American Journal of Botany" pageId="0" pageNumber="1" refId="B49" refString="Post, GE, 1932. Flora of Syria, Palestine and Sinai (ed. 2). Ripol Klassik, Beirut, 1-639." title="Flora of Syria, Palestine and Sinai (ed. 2). Ripol Klassik, Beirut, 1 - 639." year="1932">Post 1932</bibRefCitation>
|
||||
<bibRefCitation id="6EDF4902B5FC33557417D79042207CCD" author="Post, GE" journalOrPublisher="American Journal of Botany" pageId="0" pageNumber="1" refId="B49" refString="Post, GE, 1932. Flora of Syria, Palestine and Sinai (ed. 2). Ripol Klassik, Beirut, 1-639." title="Flora of Syria, Palestine and Sinai (ed. 2). Ripol Klassik, Beirut, 1 - 639." year="1932">Post 1932</bibRefCitation>
|
||||
). Here, we accept it as a subspecies of
|
||||
<taxonomicName lsidName="S. microsperma" pageId="0" pageNumber="1" rank="species" species="microsperma">
|
||||
<emphasis italics="true" pageId="0" pageNumber="1">S. microsperma</emphasis>
|
||||
<taxonomicName id="8BFD2DDC157F1C1AF05C789E3F6363A7" lsidName="S. microsperma" pageId="0" pageNumber="1" rank="species" species="microsperma">
|
||||
<emphasis id="5E5C7C3E66B97EC69CF850BCE90A0D87" italics="true" pageId="0" pageNumber="1">S. microsperma</emphasis>
|
||||
</taxonomicName>
|
||||
.
|
||||
</paragraph>
|
||||
<paragraph pageId="0" pageNumber="1">
|
||||
<paragraph id="866B828CF4485CB5669FF610E54BE110" pageId="0" pageNumber="1">
|
||||
The
|
||||
<taxonomicName lsidName="S. microsperma" pageId="0" pageNumber="1" rank="species" species="microsperma">
|
||||
<emphasis italics="true" pageId="0" pageNumber="1">S. microsperma</emphasis>
|
||||
<taxonomicName id="70438F3E5C97B3EA9461E56E48C1438A" lsidName="S. microsperma" pageId="0" pageNumber="1" rank="species" species="microsperma">
|
||||
<emphasis id="986158B756F91F33DFECB9EF6AFF1D71" italics="true" pageId="0" pageNumber="1">S. microsperma</emphasis>
|
||||
</taxonomicName>
|
||||
accessions with
|
||||
<taxonomicName lsidName="S. exsudans" pageId="0" pageNumber="1" rank="species" species="exsudans">
|
||||
<emphasis italics="true" pageId="0" pageNumber="1">S. exsudans</emphasis>
|
||||
<taxonomicName id="B95F499F64397B2CF0908F93602E5D4D" lsidName="S. exsudans" pageId="0" pageNumber="1" rank="species" species="exsudans">
|
||||
<emphasis id="1AB54A09E4354488C2B9F0FC2C00569E" italics="true" pageId="0" pageNumber="1">S. exsudans</emphasis>
|
||||
</taxonomicName>
|
||||
and one accession of
|
||||
<taxonomicName lsidName="S. georgievskyi" pageId="0" pageNumber="1" rank="species" species="georgievskyi">
|
||||
<emphasis italics="true" pageId="0" pageNumber="1">S. georgievskyi</emphasis>
|
||||
<taxonomicName id="B09BA71A8DD613A047B226F9335B29F4" lsidName="S. georgievskyi" pageId="0" pageNumber="1" rank="species" species="georgievskyi">
|
||||
<emphasis id="9289994D71B6CD3209A14CC2018D8A95" italics="true" pageId="0" pageNumber="1">S. georgievskyi</emphasis>
|
||||
</taxonomicName>
|
||||
ID. 42 form a weakly supported clade in the species (Fig.
|
||||
<figureCitation captionStart="Figure 1" captionStartId="F1" captionText="Figure 1. Species tree from two STACEY runs and three unlinked regions (ITS, RPB 2, rps 16). Posterior probabilities> 0.75 are shown above branches. The number following the taxonomic name is the specimen ID (Suppl. material 1). Scale bar reflects the number of substitutions per site." figureDoi="10.3897/phytokeys.159.51500.figure1" httpUri="https://binary.pensoft.net/fig/447285" pageId="0" pageNumber="1">1</figureCitation>
|
||||
<figureCitation id="A8BE48B2600186AF32FA1BE5142F4FC9" captionStart="Figure 1" captionStartId="F1" captionText="Figure 1. Species tree from two STACEY runs and three unlinked regions (ITS, RPB 2, rps 16). Posterior probabilities> 0.75 are shown above branches. The number following the taxonomic name is the specimen ID (Suppl. material 1). Scale bar reflects the number of substitutions per site." figureDoi="10.3897/phytokeys.159.51500.figure1" httpUri="https://binary.pensoft.net/fig/447285" pageId="0" pageNumber="1">1</figureCitation>
|
||||
) and
|
||||
<emphasis italics="true" pageId="0" pageNumber="1">rps16</emphasis>
|
||||
<emphasis id="326042ED1BBA5F77F12D3FC4ED34A0AB" italics="true" pageId="0" pageNumber="1">rps16</emphasis>
|
||||
(PP <0.75) trees. The
|
||||
<emphasis italics="true" pageId="0" pageNumber="1">RPB2</emphasis>
|
||||
<emphasis id="C33472959FD2C78B216A29B6BC5941CE" italics="true" pageId="0" pageNumber="1">RPB2</emphasis>
|
||||
tree shows almost the same pattern, but
|
||||
<taxonomicName lsidName="S. chaetodonta" pageId="0" pageNumber="1" rank="species" species="chaetodonta">
|
||||
<emphasis italics="true" pageId="0" pageNumber="1">S. chaetodonta</emphasis>
|
||||
<taxonomicName id="7F1BD251127BD5224143427FD8CE8B8F" lsidName="S. chaetodonta" pageId="0" pageNumber="1" rank="species" species="chaetodonta">
|
||||
<emphasis id="3959B0EA9EBA53A2400B5A9DAA15F6B7" italics="true" pageId="0" pageNumber="1">S. chaetodonta</emphasis>
|
||||
</taxonomicName>
|
||||
ID 181 from Turkey is included in this clade (PP = 0.96 MPB = 83%, Fig.
|
||||
<figureCitation captionStart="Figure 5" captionStartId="F5" captionText="Figure 5. Phylogenetic tree resulting from Bayesian analysis of the RPB 2 sequences including 76 taxa. The trees were summarized in a 50 % majority-rule consensus tree with the posterior probabilities (PP) indicated above branches. Bootstrap support values (> 75 %) based on MP and ML are noted below branches, respectively. The numbers following the taxonomic name indicate the specimen ID and Genbank numbers (Suppl. material 1), respectively." figureDoi="10.3897/phytokeys.159.51500.figure5" httpUri="https://binary.pensoft.net/fig/447289" pageId="0" pageNumber="1">5</figureCitation>
|
||||
<figureCitation id="31611F1469E0A0BD49D0B4849D2A8840" captionStart="Figure 5" captionStartId="F5" captionText="Figure 5. Phylogenetic tree resulting from Bayesian analysis of the RPB 2 sequences including 76 taxa. The trees were summarized in a 50 % majority-rule consensus tree with the posterior probabilities (PP) indicated above branches. Bootstrap support values (> 75 %) based on MP and ML are noted below branches, respectively. The numbers following the taxonomic name indicate the specimen ID and Genbank numbers (Suppl. material 1), respectively." figureDoi="10.3897/phytokeys.159.51500.figure5" httpUri="https://binary.pensoft.net/fig/447289" pageId="0" pageNumber="1">5</figureCitation>
|
||||
). The ITS phylogeny supports a close relationship between
|
||||
<taxonomicName lsidName="S. microsperma" pageId="0" pageNumber="1" rank="species" species="microsperma">
|
||||
<emphasis italics="true" pageId="0" pageNumber="1">S. microsperma</emphasis>
|
||||
<taxonomicName id="7D3E6F8D5D3F00613FA7E8D29F9280B7" lsidName="S. microsperma" pageId="0" pageNumber="1" rank="species" species="microsperma">
|
||||
<emphasis id="30DC124D5F4E628672D55CE65CB39AF5" italics="true" pageId="0" pageNumber="1">S. microsperma</emphasis>
|
||||
</taxonomicName>
|
||||
and
|
||||
<taxonomicName lsidName="S. exsudans" pageId="0" pageNumber="1" rank="species" species="exsudans">
|
||||
<emphasis italics="true" pageId="0" pageNumber="1">S. exsudans</emphasis>
|
||||
<taxonomicName id="C8A9D10E9C8F1A95CF2BE72D34A40371" lsidName="S. exsudans" pageId="0" pageNumber="1" rank="species" species="exsudans">
|
||||
<emphasis id="04488E05984BF2EDBA980F77BA8EF0A5" italics="true" pageId="0" pageNumber="1">S. exsudans</emphasis>
|
||||
</taxonomicName>
|
||||
(PP = 0.98 MPB = 86% MLB = 97%, Fig.
|
||||
<figureCitation captionStart="Figure 3" captionStartId="F3" captionText="Figure 3. Phylogenetic tree resulting from Bayesian analysis of the ITS sequences including 76 taxa. The trees were summarized in a 50 % majority-rule consensus tree with the posterior probabilities (PP) indicated above branches. Bootstrap support values (> 75 %) based on MP and ML are noted below branches, respectively. The numbers following the taxonomic name indicate the specimen ID and Genbank numbers (Suppl. material 1), respectively." figureDoi="10.3897/phytokeys.159.51500.figure3" httpUri="https://binary.pensoft.net/fig/447287" pageId="0" pageNumber="1">3</figureCitation>
|
||||
<figureCitation id="CD3C9836ACC9DDB979AF03623872A7B6" captionStart="Figure 3" captionStartId="F3" captionText="Figure 3. Phylogenetic tree resulting from Bayesian analysis of the ITS sequences including 76 taxa. The trees were summarized in a 50 % majority-rule consensus tree with the posterior probabilities (PP) indicated above branches. Bootstrap support values (> 75 %) based on MP and ML are noted below branches, respectively. The numbers following the taxonomic name indicate the specimen ID and Genbank numbers (Suppl. material 1), respectively." figureDoi="10.3897/phytokeys.159.51500.figure3" httpUri="https://binary.pensoft.net/fig/447287" pageId="0" pageNumber="1">3</figureCitation>
|
||||
). There is very little resolution within the
|
||||
<taxonomicName lsidName="S. microsperma" pageId="0" pageNumber="1" rank="species" species="microsperma">
|
||||
<emphasis italics="true" pageId="0" pageNumber="1">S. microsperma</emphasis>
|
||||
<taxonomicName id="89585512D18282B9F8A87C9538FFD281" lsidName="S. microsperma" pageId="0" pageNumber="1" rank="species" species="microsperma">
|
||||
<emphasis id="17EA142596CA7A6120F60E3359067639" italics="true" pageId="0" pageNumber="1">S. microsperma</emphasis>
|
||||
</taxonomicName>
|
||||
clade.
|
||||
</paragraph>
|
||||
|
|
|
|||
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