From 5bd00689304d1cd685dbd86ddd8769badc0eec7e Mon Sep 17 00:00:00 2001 From: ggserver Date: Fri, 4 Oct 2024 20:02:07 +0000 Subject: [PATCH] Add updates up until 2024-10-04 19:56:03 --- .../8A/03B18A14402CFF81FEC7F9720030F807.xml | 1415 +++++++++++++++++ 1 file changed, 1415 insertions(+) create mode 100644 data/03/B1/8A/03B18A14402CFF81FEC7F9720030F807.xml diff --git a/data/03/B1/8A/03B18A14402CFF81FEC7F9720030F807.xml b/data/03/B1/8A/03B18A14402CFF81FEC7F9720030F807.xml new file mode 100644 index 00000000000..daf57f3fea8 --- /dev/null +++ b/data/03/B1/8A/03B18A14402CFF81FEC7F9720030F807.xml @@ -0,0 +1,1415 @@ + + + +Molecular phylogeny and morphology reveal a new species of genus Rhodocybe sensu stricto Maire (Entolomataceae; Agaricales) from Pakistan + + + +Author + +Abdul, Zaman Khan +Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus- 54590, Lahore (Pakistan) zamanangra 93 @ gmail. com (corresponding author) +zamanangra93@gmail.com + + + +Author + +Khalid, Abdul Nasir +Fungal Biology and Systematics Research Laboratory, Institute of Botany, University of the Punjab, Quaid-e-Azam Campus- 54590, Lahore (Pakistan) zamanangra 93 @ gmail. com (corresponding author) +zamanangra93@gmail.com + +text + + +Cryptogamie, Mycologie + + +2024 + +2024-10-03 + + +20 + + +10 + + +127 +137 + + + + +https://sciencepress.mnhn.fr/sites/default/files/articles/pdf/mycologie2024v45a10.pdf + +journal article +10.5252/cryptogamie-mycologie2024v45a10 +1776-100X +13891884 + + + + + + +Rhodocybe pakistanica + +sp. nov. + + + + + + +( +Figs 3-5 +) + + +The species is mainly characterized by centrally depressed and dull reddish brown or dull orange pileus with bright patches, light yellow to orange lamellae, light reddish gray and fibrillose stipe, ovoid or oblong basidiospores, lanceolate, subulate or ventricose-rostrate cheilo and pleurocystidia, and presence of gloeoplerous hyphae in pileal and hymenial trama. + + + + +TYPE +MATERIAL +. — + +Pakistan + +• +Punjab Province +, +District Khushab +, +Noorpur Thal +, +Peelowains +, on moist sandy soil with litter; +32°01’22.4”N +, +71°59’32.4”E +; + +191 m +a.s.l. + +; + +01.VIII.2022 + +; + +Zaman Khan +& +Junaid Khan +P-154 + +; +holotype +: +LAH37947 +; GenBank: +OR606543 +(ITS), +OR606541 +(28S) + +. + + + +ADDITIONAL +MATERIAL +EXAMINED +. — + +Pakistan + +• +Punjab Province +, +District Khushab +, +Noorpur Thal +, +Peelowains +, on moist sandy soil near + +Ziziphus nummularia +(Burm.f.) Wight & Arn. + +; +31°59’17.36”N +, +71°59’25.86”E +; + +191 m +a.s.l. + +; + +30.VII.2022 + +; + +Zaman Khan +& +Junaid Khan +P-146 + +; +LAH37948 +; GenBank: +OR606544 +(ITS), +OR606542 +(28S) + +• + +ibid. +; + +02.VIII.2022 + +; + +Zaman Khan +& +Junaid Khan +P-171 + +; +LAH37949 +; GenBank: +OR606545 +(ITS) + +. + + + + +ETYMOLOGY +. — The specific epithet ‘pakistanica’ refers to the +type +locality of species. + + + + +HABIT +, +HABITAT +, +AND +DISTRIBUTION +. — Saprotrophic, solitary, terrestrial, on moist, sandy soil with litter in forest, near + +Dalbergia sissoo + +, and + +Ziziphus nummularia + +. Presently only known from +Punjab +, +Pakistan +. + + +MYCOBANK +. — MB850258. + + + + + +DESCRIPTION + + + + +Basidiomata + + + +18-30 mm +in length, small-sized. Pileus +7-28 mm +diam., surface dull reddish brown (5YR 4/4, 5/4), at center becoming dull orange (7.5YR 6/4) or pale (5YR 8/3) towards periphery, with bright patches (7.5YR 5/6) scattering towards margins when mature, initially convex or hemispherical, depressed at center, becoming applanate or planoconvex and slightly depressed with age, margins decurved or plane at initial stage, uplifted or flaring upon maturity, undulate, entire. + + + +Lamellae + + +Light yellow (10YR 8/3) to orange (10YR 8/4) or light (5YR 8/1) to gray (5YR 8/2), subdecurrent to decurrent, arcuate, broad or ventricose, brittle, entire or undate margins, lamellulae present in four tiers. + + +Stipe + + + +15-28 × +2-4 mm +, central, cylindrical or slightly tapering downwards, dull (2.5YR 6/3) to pale reddish (2.5 YR 7/3) or light reddish gray (7.5R 7/1) to grayish red (7.5R 6/2), with whitish fibrils on the surface, with rhizomorphs and whitish mycelial threads. + + + +Context + + +Solid, pale reddish. Odor and taste not recorded. + + +Basidiospores + + +[50/3/3], 5.3-7×3.8-4.6 µm, avl×avw=5.9×4.2 µm, Q=1.35- 1.52, avQ=1.42, ovoid or oblong, sometimes ellipsoid, slightly undulate-pustulate, cyanophilic, inamyloid, non-dextrinoid, with prominent apiculus. + + +Basidia + + +21-26 ×6-8 µm, narrowly clavate to clavate, cyanophilic, with refractive contents in 5% KOH, thin-walled, two to four spored, sterigmata up to 4.4 µm in length. + + +TABLE +1. — Voucher/strain/isolate, country, GenBank/UNITE accession number, and reference for the specimens included in nrITS and combined ITS-28S phylogenetic analysis. The sequences produced during this study are shown in +bold font +. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+GenBank/UNITE +
+accession no. +
+Taxon name Voucher/strain/isolate + +nrITS + +28S + +Country + +Reference +
+ +Calocybe carnea + +(outgroup) CBS552.50 +AF357028AF223178– + +Hofstetter +et al. +2002 + +
+ +Clitocella fallax + +CBS605.79 +AF357018AF223165– + +Hofstetter +et al. +2002 + +
+ +Clitocella fallax + +CBS129.63 +AF357017AF223166– + +Hofstetter +et al. +2002 + +
+ +Clitocella mundula + +TJB7599 +DQ494694AY700182– + +Matheny +et al. +2006 + +
+ +Clitocella mundula + +HMJAU 7275 +MN061331MN065723China + +Jian +et al. +2020 + +
+ +Clitocella orientalis + +KUN-HKAS 75664 (Liu53) +MN061332MN065726China + +Jian +et al. +2020 + +
+ +Clitocella orientalis + +KUN-HKAS 75548 (Cai794) +MN061333MN065727China + +Jian +et al. +2020 + +
+ +Clitopilopsis albida + +KUN-HKAS 104519 (JSP224) +MN061335MN065730China + +Jian +et al. +2020 + +
+ +Clitopilopsis albida + +KUN-HKAS 104520 (JSP225) +MN061336MN065731China + +Jian +et al. +2020 + +
+ +Clitopilopsis hirneola + +MEN 199956 +KC710132GQ289211– + +Morgado +et al. +2013 + +
+ +Clitopilopsis hirneola + +CBS 126.46 +MH856141AF223163France + +Vu +et al. +2019 + +
+ +Clitopilus passeckerianus + +CBS 299.35 +MH855682MH867198Austria + +Vu +et al. +2019 + +
+ +Clitopilus scyphoides + +KRAM5 +MN744420MN744422India-
+ +Clitopilus scyphoides + +CBS 127.47 +MH856181MH867707France + +Vu +et al. +2019 + +
+ +Clitopilus sinoapalus + +KUN-HKAS 77037 (Wu865) +MN061321MN065713China + +Jian +et al. +2020 + +
+ +Clitopilus sinoapalus + +KUN-HKAS 101191 +MN061322MN065711China + +Jian +et al. +2020 + +
(Yang6002)
+ +Clitopilus umbilicatus + +KUN-HKAS 80310 (Han79) +MN061324MN065716China + +Jian +et al. +2020 + +
+ +Clitopilus umbilicatus + +KUN-HKAS 104509 +MN061327MN065719China + +Jian +et al. +2020 + +
(Wu2506)
+ +Entoloma caccabus + +MEN 200324 +KC710063GQ289155– + +Morgado +et al. +2013 + +
+ +Entoloma conferendum + +MEN 200330 +KC710055KC710133Slovakia + +Morgado +et al. +2013 + +
+ +Entoloma serrulatum + +LE254361 +KC898447KC898501Russia + +Morozova +et al. +2014 + +
+ +Entoloma +sp. + +Sulzbacher 433/1-D-1 +LT594987–Brazil-
+ +Entoloma tjallingiorum + +LE254318 +KC898411KC898510Russia + +Morozova +et al. +2014 + +
+ +Lyophyllum decastes + +(outgroup) JM87/16(T1) +AF357059AF042583– + +Hofstetter +et al. +2002 + +
+ +Rhodocybe asanii + +KATO:Fungi:3657 +KX834265–Türkiye +Sesli & Vizzini 2017 +
+ +Rhodocybe asanii + +KATO:Fungi:3659 +NR_154442NG060176Türkiye +Sesli & Vizzini 2017 +
+ +Rhodocybe asyae + +KATO:Fungi:3653 +KX834268–Türkiye +Sesli & Vizzini 2017 +
+ +Rhodocybe asyae + +KATO:Fungi:3640 +NR_154443NG060177Türkiye +Sesli & Vizzini 2017 +
+ +Rhodocybe brunneoaurantiaca + +CUH AM720 +MW023201MW023223India: West Bengal + +Dutta +et al. +2021 + +
+ +Rhodocybe brunneoaurantiaca + +CAL 1825 +MW031906MW031916India: West Bengal + +Dutta +et al. +2021 + +
+ +Rhodocybe caelata + +JVG 1070904-2 +KU862855–Spain + +Vizzini +et al. +2016 + +
+ +Rhodocybe formosa + +Herb. B. Picillo 12/208 +KU862858–Italy + +Vizzini +et al. +2016 + +
+ +Rhodocybe formosa + +LIP JVG 1061015 +KU862856–Spain + +Vizzini +et al. +2016 + +
+ +Rhodocybe fumanellii + +MCVE:29550 +NR_166243NG068264Italy + +Vizzini +et al. +2018 + +
+ +Rhodocybe fusipes + +DLK 587 +MN306210–Brazil + +Silva-Filho +et al. +2020 + +
+ +Rhodocybe fusipes + +DLK 298 +MN306209–Brazil + +Silva-Filho +et al. +2020 + +
+ +Rhodocybe incarnata + +REH5369 +MT254071–Venezuela + +Silva-Filho +et al. +2020 + +
+ +Rhodocybe luteobrunnea + +CAL:1322 +NR_154434NG060167India–
+ +Rhodocybe matesina + +MCVE:29261 +KY629962KY629964Italy–
+ +Rhodocybe matesina + +MCVE:29262 +NR_154455NG060184Italy–
+ +Rhodocybe mellea + +JBSD127402 +MN784993–Dominican Republic + +Baroni +et al. +2020 + +
+ +Rhodocybe mellea + +CORT013885 +MN784992–Dominican Republic + +Baroni +et al. +2020 + +
+ +Rhodocybe mellea + +NYBG815044 +MN784995–Costa Rica + +Baroni +et al. +2020 + +
+ +Rhodocybe mellea + +CORT014470 +MN784994–Belize + +Baroni +et al. +2020 + +
+ +Rhodocybe mellea +var. +depressa + +F. Wartchow 08-2019 +MT408926OL687341Brazil + +Xavier +et al. +2022 + +
+ +Rhodocybe minutispora + +LIP JVG 1071101 +KU862860–Spain + +Vizzini +et al. +2016 + +
+ + +Rhodocybe pakistanica +sp. nov. + +LAH37948 + + +OR606544 + +OR606542 + +Pakistan + +This study +
+ + +Rhodocybe pakistanica +sp. nov. + +LAH37949 + + +OR606545 + +– + +Pakistan + +This study +
+ + +Rhodocybe pakistanica +sp. nov. + +LAH37947 + + +OR606543 + +OR606541 + +Pakistan + +This study +
+(holotype) +
+ +Rhodocybe pallidogrisea + +CORT 013944 +KX271752–Australia–
+ +Rhodocybe roseiavellanea + +PBM4056 (TENN) +MF686525–United States–
+ +Rhodocybe rubrobrunnea + +CAL 1387 +KX951452–India–
+ +Rhodocybe +sp. + +Sulzbacher 340 +LT594979–Brazil + +Sulzbacher +et al. +2017 + +
(UFRN-fungos 2557)
+ +Rhodocybe +sp. + +Sulzbacher 413 +LT594984–Brazil + +Sulzbacher +et al. +2017 + +
(UFRN-fungos 2062)
+ +Rhodocybe truncata + +CBS482/50 +EF421110AF223167––
+ +Rhodocybe tugrulii + +IMG-7316 +MG050105MG050111United States–
+ +Rhodocybe tugrulii + +KATO:Fungi:3340 +NR_154436NG060175Türkiye–
+ +Rhodophana griseobrunnea + +LUG 19799 +MT580804MT580803France–
+ +Rhodophana nitellina + +TU106939 +UDB015654–Estonia–
+ +Rhodophana nitellina + +TU106585 +UDB011813–Estonia–
+ +Rhodophana squamulosa + +CAL:1262 +KT180329NG060152India + +Raj +et al. +2016 + +
+ +0.07 + + +FIG +. 1. — Maximum likelihood phylogenetic tree of sequences of +Entolomataceae Kotl. & Pouzar +, resulting from the analysis of nrITS sequences; maximum likelihood bootstrap BT support values greater than 50% are written above the nodes; new species + +Rhodocybe pakistanica + +sp. nov. +is indicated in +bold font +. + + + + +Cheilo- and pleurocystidia + + +Rarely present, 24-37 × 4-7 µm, lanceolate, subulate, ventricose-rostrate, sometimes fusiform, cylindrical or clavate, with golden ochre or pale yellowish refractive contents in 5% KOH. + + +Lamellar trama + + +Consisting of 5.5-12.5 µm broad, regular, cylindrical, interwoven hyphae, hyaline in 5% KOH. + + +Gloeoplerous hyphae in hymenial and pileal trama + + +3.2-7.7 µm broad, cylindrical, elongated, with narrow endings, incrusted, golden refringent in 5% KOH. + + +Pileipellis + + +A cutis, consisting of 2.4-6.7 µm broad, cylindrical or elongate, thin-walled hyphae, brownish in 5% KOH. + + +Stipitipellis + + +A cutis, consisting of 3.2-8.8 µm broad, cylindrical, parallel, rarely branched hyphae, with clavate or narrowly fusiform ending elements, hyaline in 5% KOH. + + +Caulocystidia + + +Absent. + + +Clamp connections + + +Absent in all tissues. + + + \ No newline at end of file