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<mods:title id="B9C0E7449BA6C231995D3760B56B4E17">Altai Mountains - cradle of hybrids and introgressants: A case study in Veronica subg. Pseudolysimachium (Plantaginaceae)</mods:title>
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<mods:affiliation id="F326B5EF4EAD4B608F3DC480558CD4D4">Eike Mayland-Quellhorst, & Petr A. Kosachev, & Institute for Biology and Environmental Sciences, Carl von Ossietzky-University Oldenburg, Carl von Ossietzky-Str. & type. The GISH investigation in one case strongly supports homoploid hybridization (origin of V. × schmakovii from V. longifolia and V. porphyriana. Divergence times of Altai Veronica species are estimated to be within & -</mods:affiliation>
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<mods:namePart id="0FE94ECAE2BCEDAB444D5451C7094545">Mayland-Quellhorst, Eike</mods:namePart>
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<mods:affiliation id="26D19CE585F39305F0B57315C1B1C2AB">Eike Mayland-Quellhorst, & Petr A. Kosachev, & Institute for Biology and Environmental Sciences, Carl von Ossietzky-University Oldenburg, Carl von Ossietzky-Str. & type. The GISH investigation in one case strongly supports homoploid hybridization (origin of V. × schmakovii from V. longifolia and V. porphyriana. Divergence times of Altai Veronica species are estimated to be within & -</mods:affiliation>
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<mods:namePart id="56ECE4DBFA1397CC86D38DC8D403794F">Mayland-Quellhorst, Eike</mods:namePart>
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<mods:affiliation id="0F85AB9142E9A4A40EB96B32655E4B26">Eike Mayland-Quellhorst, & Petr A. Kosachev, & Institute for Biology and Environmental Sciences, Carl von Ossietzky-University Oldenburg, Carl von Ossietzky-Str. & type. The GISH investigation in one case strongly supports homoploid hybridization (origin of V. × schmakovii from V. longifolia and V. porphyriana. Divergence times of Altai Veronica species are estimated to be within & -</mods:affiliation>
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<mods:affiliation id="CD0E119A470F407844093107884AED52">Terezie Mandáková, & Faculty of Biology, Altai State University, Lenina 61, 656049 Barnaul, Russia & million years ago with high probability of gene flow over that time. Our results also demonstrate that the direction of gene flow is mainly from the locally endemic V. porphyriana. We hypothesize that the large Siberian plains and topographically diverse foreland of the Altai Mountains provide an ideal setting for hybridization with the potential for adaptive introgression of alleles conferring tolerance to cooler climates, to the lowland species migrating into the Altai Mountains.</mods:affiliation>
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<mods:namePart id="3BDD4CF63E836BB63C7CFD9FC9859CEF">Kosachev, Petr A.</mods:namePart>
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<mods:affiliation id="3D37ED90043550775EA59E5D11802676">Terezie Mandáková, & Faculty of Biology, Altai State University, Lenina 61, 656049 Barnaul, Russia & million years ago with high probability of gene flow over that time. Our results also demonstrate that the direction of gene flow is mainly from the locally endemic V. porphyriana. We hypothesize that the large Siberian plains and topographically diverse foreland of the Altai Mountains provide an ideal setting for hybridization with the potential for adaptive introgression of alleles conferring tolerance to cooler climates, to the lowland species migrating into the Altai Mountains.</mods:affiliation>
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<mods:namePart id="DA2A3B8185AF529D9FD592D7432A7751">Mandáková, Terezie</mods:namePart>
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<mods:affiliation id="DAE8CBE9645C478C7B53D47C5DA46641">& Dirk C. Albach & Central European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic</mods:affiliation>
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<mods:namePart id="856BD22326E17E928DAA2604C062CC75">Mandáková, Terezie</mods:namePart>
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<mods:affiliation id="1725422608EC9B1E6A4EA9CEDEA6ACC6">& Dirk C. Albach & Central European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic</mods:affiliation>
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<mods:namePart id="BFA2D2F77AF07E8BACD81644331D61C7">Lysak, Martin A.</mods:namePart>
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<mods:affiliation id="56BB5FD44072782D60DDF01F22704262">& Dirk C. Albach & Central European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic</mods:affiliation>
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<mods:namePart id="3447F00812FD779A90318A76860F4243">Lysak, Martin A.</mods:namePart>
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<mods:affiliation id="4B119696D290182AC661F34F0C6A1382">& Dirk C. Albach & Central European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic</mods:affiliation>
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<mods:namePart id="299134D6FE147D56FD643F676673D75B">Albach, Dirk C.</mods:namePart>
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@ -101,7 +103,7 @@ and likelihood scores (suppl.
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), which differs from the expected
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<emphasis id="B93D381BFFCE990531B3F849FF2EB8B0" box="[210,228,1947,1970]" italics="true" pageId="6" pageNumber="536">K</emphasis>
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= 10 based on species assignment (
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|
||||
<tableCitation id="C6CBD1B2FFCE990533E9F849FD15B8B0" box="[648,735,1947,1970]" captionStart="Table 1" captionStartId="2.[103,156,1099,1120]" captionTargetId="graphics-522@2.[103,1436,1533,1573]" captionTargetPageId="2" captionText="Table 1. Details of sampled morphotypes and their geographical distribution." httpUri="http://table.plazi.org/id/DF36B481FFCA99013106FB99FCE4BB62" pageId="6" pageNumber="536" tableUuid="DF36B481FFCA99013106FB99FCE4BB62">Table 1</tableCitation>
|
||||
).
|
||||
</paragraph>
|
||||
<paragraph id="8BF6E409FFCE99053274FF69FCBBBD10" blockId="6.[789,1437,187,1970]" pageId="6" pageNumber="536">
|
||||
|
|
@ -165,7 +167,7 @@ The DAPC recovered 20 principal components as the best to group our data and cle
|
|||
= 5 (
|
||||
<figureCitation id="1372F88CFFCE9905322DFD89FC6ABD70" box="[844,928,603,626]" captionStart="Fig" captionStartId="7.[151,183,1809,1830]" captionTargetBox="[151,1484,392,1773]" captionTargetId="graphics-103@7.[179,937,440,1773]" captionTargetPageId="7" captionText="Fig. 2. Assignments of individuals to K clusters/populations based on Bayesian, multivariate and likelihood approaches as implemented in STRUC- TURE, DAPC (in the adegenet package) and IQ-TREE programs respectively. A, Maximum likelihood unrooted tree reconstructed in IQ-TREE, calibrated with 1000 ultrafast bootstrap replicates. The numbers near the nodes represent bootstrap confidence. This analysis was based on 174 putative pure individuals. B, Probability of ancestry of each individual (horizontal axis; total 174 individuals) to each of K = 5 populations (vertical axis). The five populations correspond mostly to the morphotypes hypothesized for putative pure species. C, Discriminant analysis of principal components using the same dataset as in (B). D, Corresponding morphotypes of K = 5. — Photos: P.A. Kosachev." figureDoi="http://doi.org/10.5281/zenodo.14047619" httpUri="https://zenodo.org/record/14047619/files/figure.png" pageId="6" pageNumber="536">Fig. 2C</figureCitation>
|
||||
; suppl.
|
||||
<figureCitation id="1372F88CFFCE9905329BFD89FB87BD70" box="[1018,1101,603,626]" captionStart="Fig" captionStartId="11.[151,183,1865,1886]" captionTargetBox="[276,1316,1153,1829]" captionTargetId="graphics-603@11.[421,1237,1446,1533]" captionTargetPageId="11" captionText="Fig. 4. STRUCTURE results showing the probability of ancestry of each individual (horizontal axis) to each of K = 2 populations (vertical axis) in all the five scenarios. A, Veronica spicata × V. pinnata; B, V. incana and V. longifolia; C, V. longifolia and V. porphyriana; D & E, V. pinnata and V. porphyriana involving putative hybrids of V. ×schmakovii and V. ×sessiliflora. Details of the exact posterior probabilities of each putative hybrid individual and their corresponding parents are given in suppl. Table S3." pageId="6" pageNumber="536">Fig. S4</figureCitation>
|
||||
<figureCitation id="1372F88CFFCE9905329BFD89FB87BD70" box="[1018,1101,603,626]" captionStart="Fig" captionStartId="11.[151,183,1865,1886]" captionTargetBox="[276,1316,1153,1829]" captionTargetId="graphics-603@11.[421,1237,1446,1533]" captionTargetPageId="11" captionText="Fig. 4. STRUCTURE results showing the probability of ancestry of each individual (horizontal axis) to each of K = 2 populations (vertical axis) in all the five scenarios. A, Veronica spicata × V. pinnata; B, V. incana and V. longifolia; C, V. longifolia and V. porphyriana; D & E, V. pinnata and V. porphyriana involving putative hybrids of V. ×schmakovii and V. ×sessiliflora. Details of the exact posterior probabilities of each putative hybrid individual and their corresponding parents are given in suppl. Table S3." figureDoi="http://doi.org/10.5281/zenodo.14107798" httpUri="https://zenodo.org/record/14107798/files/figure.png" pageId="6" pageNumber="536">Fig. S4</figureCitation>
|
||||
). The DAPC results were supported by the unrooted trees inferred by IQ-TREE (
|
||||
<figureCitation id="1372F88CFFCE9905345BFDA9FA47BD90" box="[1338,1421,635,658]" captionStart="Fig" captionStartId="7.[151,183,1809,1830]" captionTargetBox="[151,1484,392,1773]" captionTargetId="graphics-103@7.[179,937,440,1773]" captionTargetPageId="7" captionText="Fig. 2. Assignments of individuals to K clusters/populations based on Bayesian, multivariate and likelihood approaches as implemented in STRUC- TURE, DAPC (in the adegenet package) and IQ-TREE programs respectively. A, Maximum likelihood unrooted tree reconstructed in IQ-TREE, calibrated with 1000 ultrafast bootstrap replicates. The numbers near the nodes represent bootstrap confidence. This analysis was based on 174 putative pure individuals. B, Probability of ancestry of each individual (horizontal axis; total 174 individuals) to each of K = 5 populations (vertical axis). The five populations correspond mostly to the morphotypes hypothesized for putative pure species. C, Discriminant analysis of principal components using the same dataset as in (B). D, Corresponding morphotypes of K = 5. — Photos: P.A. Kosachev." figureDoi="http://doi.org/10.5281/zenodo.14047619" httpUri="https://zenodo.org/record/14047619/files/figure.png" pageId="6" pageNumber="536">Fig. 2A</figureCitation>
|
||||
). The morphometric analysis (suppl. Appendix S1.) also supported the results of the genetic analyses in delimiting five main groups similar to those in
|
||||
|
|
@ -174,7 +176,7 @@ The DAPC recovered 20 principal components as the best to group our data and cle
|
|||
<emphasis id="B93D381BFFCE990535D6FD29FB0DBC10" box="[1207,1223,763,786]" italics="true" pageId="6" pageNumber="536">F</emphasis>
|
||||
<subScript id="17CDE64CFFCE990535A6FCD7FB14BC17" attach="left" box="[1223,1246,773,789]" fontSize="7" pageId="6" pageNumber="536">ST</subScript>
|
||||
= 0.16 (
|
||||
<tableCitation id="C6CBD1B2FFCE99053459FD29FA43BC10" box="[1336,1417,763,786]" captionStart="Table 2" captionStartId="9.[151,204,1537,1558]" captionTargetId="graphics-775@9.[151,1484,1738,1741]" captionTargetPageId="9" captionText="Table 2. Details of AMOVA in each group with different combination without including the putative hybrid." pageId="6" pageNumber="536">Table 2</tableCitation>
|
||||
<tableCitation id="C6CBD1B2FFCE99053459FD29FA43BC10" box="[1336,1417,763,786]" captionStart="Table 2" captionStartId="9.[151,204,1537,1558]" captionTargetId="graphics-775@9.[151,1484,1738,1741]" captionTargetPageId="9" captionText="Table 2. Details of AMOVA in each group with different combination without including the putative hybrid." httpUri="http://table.plazi.org/id/DF36B481FFC1990A31F6F9D3FB48B917" pageId="6" pageNumber="536" tableUuid="DF36B481FFC1990A31F6F9D3FB48B917">Table 2</tableCitation>
|
||||
).
|
||||
</paragraph>
|
||||
<paragraph id="8BF6E409FFCE99053223FCC9FAB8BCD0" blockId="6.[789,1437,187,1970]" pageId="6" pageNumber="536">
|
||||
|
|
@ -227,7 +229,7 @@ and
|
|||
<emphasis id="B93D381BFFCE99053401FC49FCB5BCD0" italics="true" pageId="6" pageNumber="536">V. taigischensis</emphasis>
|
||||
</taxonomicName>
|
||||
did not fit to any clear group (suppl.
|
||||
<tableCitation id="C6CBD1B2FFCE99053464FC69FAAFBCD0" box="[1285,1381,955,978]" captionStart="Table 2" captionStartId="9.[151,204,1537,1558]" captionTargetId="graphics-775@9.[151,1484,1738,1741]" captionTargetPageId="9" captionText="Table 2. Details of AMOVA in each group with different combination without including the putative hybrid." pageId="6" pageNumber="536">Table S2</tableCitation>
|
||||
<tableCitation id="C6CBD1B2FFCE99053464FC69FAAFBCD0" box="[1285,1381,955,978]" captionStart="Table 2" captionStartId="9.[151,204,1537,1558]" captionTargetId="graphics-775@9.[151,1484,1738,1741]" captionTargetPageId="9" captionText="Table 2. Details of AMOVA in each group with different combination without including the putative hybrid." httpUri="http://table.plazi.org/id/DF36B481FFC1990A31F6F9D3FB48B917" pageId="6" pageNumber="536" tableUuid="DF36B481FFC1990A31F6F9D3FB48B917">Table S2</tableCitation>
|
||||
).
|
||||
</paragraph>
|
||||
<paragraph id="8BF6E409FFCE99053223FC08FC42B9B0" blockId="6.[789,1437,187,1970]" pageId="6" pageNumber="536">
|
||||
|
|
@ -343,7 +345,7 @@ The hypothesis of hybridization between and among species of
|
|||
in the
|
||||
<collectingRegion id="498D2AEBFFCE99053570F909FB8FB9F0" box="[1041,1093,1755,1778]" country="Russia" name="Altay" pageId="6" pageNumber="536">Altai</collectingRegion>
|
||||
Mountains based on their morphotypes was mostly supported by STRUCTURE, and NewHybrids (
|
||||
<figureCitation id="1372F88CFFCE990532D7F8C9FBCBB830" box="[950,1025,1819,1842]" captionStart="Fig" captionStartId="11.[151,183,1865,1886]" captionTargetBox="[276,1316,1153,1829]" captionTargetId="graphics-603@11.[421,1237,1446,1533]" captionTargetPageId="11" captionText="Fig. 4. STRUCTURE results showing the probability of ancestry of each individual (horizontal axis) to each of K = 2 populations (vertical axis) in all the five scenarios. A, Veronica spicata × V. pinnata; B, V. incana and V. longifolia; C, V. longifolia and V. porphyriana; D & E, V. pinnata and V. porphyriana involving putative hybrids of V. ×schmakovii and V. ×sessiliflora. Details of the exact posterior probabilities of each putative hybrid individual and their corresponding parents are given in suppl. Table S3." pageId="6" pageNumber="536">Fig. 4</figureCitation>
|
||||
<figureCitation id="1372F88CFFCE990532D7F8C9FBCBB830" box="[950,1025,1819,1842]" captionStart="Fig" captionStartId="11.[151,183,1865,1886]" captionTargetBox="[276,1316,1153,1829]" captionTargetId="graphics-603@11.[421,1237,1446,1533]" captionTargetPageId="11" captionText="Fig. 4. STRUCTURE results showing the probability of ancestry of each individual (horizontal axis) to each of K = 2 populations (vertical axis) in all the five scenarios. A, Veronica spicata × V. pinnata; B, V. incana and V. longifolia; C, V. longifolia and V. porphyriana; D & E, V. pinnata and V. porphyriana involving putative hybrids of V. ×schmakovii and V. ×sessiliflora. Details of the exact posterior probabilities of each putative hybrid individual and their corresponding parents are given in suppl. Table S3." figureDoi="http://doi.org/10.5281/zenodo.14107798" httpUri="https://zenodo.org/record/14107798/files/figure.png" pageId="6" pageNumber="536">Fig. 4</figureCitation>
|
||||
; suppl. Table S3). The first-level STRUCTURE analysis is a bit more inconclusive in that respect showing admixture of various levels involving both the biparental hybrids and potential triparental hybrid (
|
||||
<figureCitation id="1372F88CFFCE9905342BF8A9FA47B890" box="[1354,1421,1915,1938]" captionStart="Fig" captionStartId="7.[151,183,1809,1830]" captionTargetBox="[151,1484,392,1773]" captionTargetId="graphics-103@7.[179,937,440,1773]" captionTargetPageId="7" captionText="Fig. 2. Assignments of individuals to K clusters/populations based on Bayesian, multivariate and likelihood approaches as implemented in STRUC- TURE, DAPC (in the adegenet package) and IQ-TREE programs respectively. A, Maximum likelihood unrooted tree reconstructed in IQ-TREE, calibrated with 1000 ultrafast bootstrap replicates. The numbers near the nodes represent bootstrap confidence. This analysis was based on 174 putative pure individuals. B, Probability of ancestry of each individual (horizontal axis; total 174 individuals) to each of K = 5 populations (vertical axis). The five populations correspond mostly to the morphotypes hypothesized for putative pure species. C, Discriminant analysis of principal components using the same dataset as in (B). D, Corresponding morphotypes of K = 5. — Photos: P.A. Kosachev." figureDoi="http://doi.org/10.5281/zenodo.14047619" httpUri="https://zenodo.org/record/14047619/files/figure.png" pageId="6" pageNumber="536">Fig. 2</figureCitation>
|
||||
). The maximum likelihood tree based on all individuals also revealed that the putative hybrid individuals are mostly sister to one of the suggested parents (suppl.
|
||||
|
|
@ -375,7 +377,7 @@ Mountains based on their morphotypes was mostly supported by STRUCTURE, and NewH
|
|||
<emphasis id="B93D381BFFCF9904355AFF09FB64BFF0" box="[1083,1198,219,242]" italics="true" pageId="7" pageNumber="537">reverdattoi</emphasis>
|
||||
</taxonomicName>
|
||||
. The STRUCTURE results showed that in most cases the putative hybrid individuals in all five scenarios had posterior probabilities ranging between 0.15 <Q <0.50 or 0.50 <Q <0.85, which suggests a hybrid swarm from F1 to later-generation hybrids (
|
||||
<figureCitation id="1372F88CFFC1990A33E6FF69FD00BFD0" box="[647,714,187,210]" captionStart="Fig" captionStartId="11.[151,183,1865,1886]" captionTargetBox="[276,1316,1153,1829]" captionTargetId="graphics-603@11.[421,1237,1446,1533]" captionTargetPageId="11" captionText="Fig. 4. STRUCTURE results showing the probability of ancestry of each individual (horizontal axis) to each of K = 2 populations (vertical axis) in all the five scenarios. A, Veronica spicata × V. pinnata; B, V. incana and V. longifolia; C, V. longifolia and V. porphyriana; D & E, V. pinnata and V. porphyriana involving putative hybrids of V. ×schmakovii and V. ×sessiliflora. Details of the exact posterior probabilities of each putative hybrid individual and their corresponding parents are given in suppl. Table S3." pageId="9" pageNumber="539">Fig. 4</figureCitation>
|
||||
<figureCitation id="1372F88CFFC1990A33E6FF69FD00BFD0" box="[647,714,187,210]" captionStart="Fig" captionStartId="11.[151,183,1865,1886]" captionTargetBox="[276,1316,1153,1829]" captionTargetId="graphics-603@11.[421,1237,1446,1533]" captionTargetPageId="11" captionText="Fig. 4. STRUCTURE results showing the probability of ancestry of each individual (horizontal axis) to each of K = 2 populations (vertical axis) in all the five scenarios. A, Veronica spicata × V. pinnata; B, V. incana and V. longifolia; C, V. longifolia and V. porphyriana; D & E, V. pinnata and V. porphyriana involving putative hybrids of V. ×schmakovii and V. ×sessiliflora. Details of the exact posterior probabilities of each putative hybrid individual and their corresponding parents are given in suppl. Table S3." figureDoi="http://doi.org/10.5281/zenodo.14107798" httpUri="https://zenodo.org/record/14107798/files/figure.png" pageId="9" pageNumber="539">Fig. 4</figureCitation>
|
||||
; suppl. Table S3). The analysis implemented in NewHybrids to group the hybrid individuals supported the results of STRUCTURE with the exception of scenario 5 and recovered hybrids of different classes but dominated by F1 (suppl. Table S3).
|
||||
</paragraph>
|
||||
<caption id="DF36B481FFCF990431F6F8C3FB7CB8B3" ID-DOI="http://doi.org/10.5281/zenodo.14047619" ID-Zenodo-Dep="14047619" httpUri="https://zenodo.org/record/14047619/files/figure.png" pageId="7" pageNumber="537" startId="7.[151,183,1809,1830]" targetBox="[151,1484,392,1773]" targetPageId="7" targetType="figure">
|
||||
|
|
|
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Reference in a new issue