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<mods:namePart id="BDE263707C4D46F98FAAC6FA43C34FA2">Skantar, Andrea M.</mods:namePart>
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<treatment id="88348788CB1EFFDE4ACDC09EFD0AFAB6" ID-DOI="http://doi.org/10.5281/zenodo.11661340" ID-GBIF-Taxon="233198938" ID-Zenodo-Dep="11661340" LSID="urn:lsid:plazi:treatment:88348788CB1EFFDE4ACDC09EFD0AFAB6" httpUri="http://treatment.plazi.org/id/88348788CB1EFFDE4ACDC09EFD0AFAB6" lastPageId="9" lastPageNumber="9" pageId="2" pageNumber="3">
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<paragraph id="0022369ECB1EFFD54ACDC09EFDCDFADA" blockId="2.[151,524,1276,1301]" box="[151,524,1276,1301]" pageId="2" pageNumber="3">
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<taxonomicName id="C79D4D1DCB1EFFD54ACDC09EFE87FADA" ID-CoL="B6HZD" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[151,326,1276,1301]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="2" pageNumber="3" phylum="Nematoda" rank="species" species="zeae" status="sp. nov.">
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<emphasis id="32E9EA8CCB1EFFD54ACDC09EFE87FADA" box="[151,326,1276,1301]" italics="true" pageId="2" pageNumber="3">TylenChus zeae</emphasis>
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<emphasis id="32E9EA8CCB1EFFD54ACDC09EFE87FADA" box="[151,326,1276,1301]" italics="true" pageId="2" pageNumber="3">Tylenchus zeae</emphasis>
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</taxonomicName>
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n. sp. (
|
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<figureCitation id="98A62A1BCB1EFFD54BC1C09EFDC1FADA" box="[411,512,1276,1301]" captionStart-0="Figure 1" captionStart-1="Figure 2" captionStart-2="Figure 3" captionStart-3="Figure 4" captionStart-4="Figure 5" captionStartId-0="3.[326,390,1232,1257]" captionStartId-1="4.[311,375,1069,1094]" captionStartId-2="5.[326,390,1394,1419]" captionStartId-3="6.[311,375,1748,1773]" captionStartId-4="7.[326,390,1758,1783]" captionTargetBox-0="[252,1350,184,1190]" captionTargetBox-1="[236,1335,184,1026]" captionTargetBox-2="[323,1280,197,1344]" captionTargetBox-3="[258,1223,191,1702]" captionTargetBox-4="[234,1317,184,1715]" captionTargetId-0="figure-289@3.[252,1350,184,1190]" captionTargetId-1="figure-226@4.[236,1335,184,1026]" captionTargetId-2="figure-180@5.[309,1292,184,1352]" captionTargetId-3="figure-7@6.[258,1314,184,1706]" captionTargetId-4="figure-12@7.[229,1374,184,1716]" captionTargetPageId-0="3" captionTargetPageId-1="4" captionTargetPageId-2="5" captionTargetPageId-3="6" captionTargetPageId-4="7" captionText-0="Figure 1: Scanning electron micrograph (SEM) images of TylenChus zeae n. sp. A: Female specimen, anterior end, arrow pointing toward the excretory pore; B: Female specimen, head; C: Female specimen, face view; D: Lateral field (midbody); E: Female specimen, anal opening; F: Female specimen, vulval opening; G: Male specimen, spicule; H: Female specimen, arrow showing the anal opening; I: Female specimen, tail; J: Male specimen, posterior end." captionText-1="Figure 2: Photomicrographs of TylenChus zeae n. sp. males and females. A–B: Anterior end with arrows pointing toward the excretory pore; C: Excretory pore; D: Areolated lateral field; E: Entire female body; F: Female basal bulb; G: Female gonad; H–I: female posterior end with arrow pointing the anal area (H); J: Female vulva region with arrow pointing toward the spermatheca; K: Male spicule." captionText-2="Figure 3: Line drawings of TylenChus zeae n. sp. A: Female pharyngeal region; B: Female lip region showing stylet; C: Areolated lateral field; D: Male spicule, gubernaculum, and bursa. E: Vulval region showing vulva, uterus, and spermatheca; F–G: female tails." captionText-3="Figure 4: Phylogenetic relationships of TylenChus zeae n. sp. with other select Tylenchidae, as inferred from a 1585 bp alignment of 18S rRNA sequences, according to the GTR + I + G model of nucleotide substitution and incorporated into MrBayes (MB) as described. A 50% majority rule consensus tree was generated with posterior probabilities (PP) shown on appropriate branches, with AphelenChOides besseyi as the outgroup. New sequences are indicated in bold." captionText-4="Figure 5: Phylogenetic relationships of TylenChus zeae n. sp. with other select Tylenchidae, as inferred from an 822 bp alignment of 28S rRNA sequences, according to the GTR + I + G model of nucleotide substitution and incorporated into MrBayes (MB) as described. A 50% majority rule consensus tree was generated with posterior probabilities (PP) shown on appropriate branches, with BursaphelenChus muCrOnatus as the outgroup. New sequences are indicated in bold." figureDoi-0="http://doi.org/10.5281/zenodo.11644695" figureDoi-1="http://doi.org/10.5281/zenodo.11644697" figureDoi-2="http://doi.org/10.5281/zenodo.11644699" figureDoi-3="http://doi.org/10.5281/zenodo.11644702" figureDoi-4="http://doi.org/10.5281/zenodo.11644704" httpUri-0="https://zenodo.org/record/11644695/files/figure.png" httpUri-1="https://zenodo.org/record/11644697/files/figure.png" httpUri-2="https://zenodo.org/record/11644699/files/figure.png" httpUri-3="https://zenodo.org/record/11644702/files/figure.png" httpUri-4="https://zenodo.org/record/11644704/files/figure.png" pageId="2" pageNumber="3">Figs. 1-5</figureCitation>
|
||||
|
|
@ -96,7 +98,7 @@ n. sp. (
|
|||
</paragraph>
|
||||
<paragraph id="0022369ECB1EFFD54ACDC11DFDEFFA57" blockId="2.[151,558,1407,1432]" box="[151,558,1407,1432]" pageId="2" pageNumber="3">
|
||||
Measurements are given in
|
||||
<tableCitation id="4D1F0325CB1EFFD54B8FC11DFDE9FA57" box="[469,552,1407,1432]" captionStart="Table 1" captionStartId="8.[151,233,184,214]" captionTargetBox="[162,1408,303,1277]" captionText="Table 1. Morphometrics of TylenCHUS Zeae n. sp. All measurements are in μm and in the form: mean ± standard deviation (range)." pageId="2" pageNumber="3">Table 1</tableCitation>
|
||||
<tableCitation id="4D1F0325CB1EFFD54B8FC11DFDE9FA57" box="[469,552,1407,1432]" captionStart="Table 1" captionStartId="8.[151,233,184,214]" captionTargetBox="[162,1408,303,1277]" captionText="Table 1. Morphometrics of TylenCHUS Zeae n. sp. All measurements are in μm and in the form: mean ± standard deviation (range)." httpUri="http://table.plazi.org/id/54E26616CB14FFDF4ACDC4DAFCE6FF34" pageId="2" pageNumber="3" tableUuid="54E26616CB14FFDF4ACDC4DAFCE6FF34">Table 1</tableCitation>
|
||||
.
|
||||
</paragraph>
|
||||
<paragraph id="0022369ECB1EFFD54ACDC1AAFE80FA29" blockId="2.[151,321,1480,1510]" box="[151,321,1480,1510]" pageId="2" pageNumber="3">
|
||||
|
|
@ -123,12 +125,12 @@ The male is similar to females in general body characteristics, except for the r
|
|||
</paragraph>
|
||||
<paragraph id="0022369ECB1EFFD5497DC040FC78F9F4" blockId="2.[806,1423,1058,1915]" pageId="2" pageNumber="3">
|
||||
<taxonomicName id="C79D4D1DCB1EFFD5497DC040FC14FBF4" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[807,981,1058,1083]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="2" pageNumber="3" phylum="Nematoda" rank="species" species="zeae" status="sp. nov.">
|
||||
<emphasis id="32E9EA8CCB1EFFD5497DC040FC14FBF4" box="[807,981,1058,1083]" italics="true" pageId="2" pageNumber="3">TylenChus zeae</emphasis>
|
||||
<emphasis id="32E9EA8CCB1EFFD5497DC040FC14FBF4" box="[807,981,1058,1083]" italics="true" pageId="2" pageNumber="3">Tylenchus zeae</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="29DA57F7CB1EFFD54986C040FBDDFBF4" box="[988,1052,1058,1083]" pageId="2" pageNumber="3" rank="species">n. sp.</taxonomicNameLabel>
|
||||
females are similar to
|
||||
<taxonomicName id="C79D4D1DCB1EFFD54F40C040FBC6FB94" authority="Andrassy, 1979" authorityName="Andrassy" authorityYear="1979" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="2" pageNumber="3" phylum="Nematoda" rank="species" species="rex">
|
||||
<emphasis id="32E9EA8CCB1EFFD54F40C040FC8BFB94" italics="true" pageId="2" pageNumber="3">TylenChus rex</emphasis>
|
||||
<emphasis id="32E9EA8CCB1EFFD54F40C040FC8BFB94" italics="true" pageId="2" pageNumber="3">Tylenchus rex</emphasis>
|
||||
<bibRefCitation id="640C4B6FCB1EFFD5490EC020FBC6FB94" author="Andrassy, I." box="[852,1031,1090,1115]" pageId="2" pageNumber="3" pagination="1 - 3" refId="ref6447" refString="Andrassy, I. 1979. The genera and species of the family Tylenchidae Orley, 1880 (Nematoda). The genus TylenChus Bastian, 1865. Acta Zoologica Academiae Scientarum Hungaricae 25: 1 - 3." type="journal article" year="1979">Andrassy, 1979</bibRefCitation>
|
||||
</taxonomicName>
|
||||
from which they differ by having a slightly different body shape (vermiform, assuming arcuate C shaped vs. body almost straight, hardly curved), shorter body length of 830 (765–895) µm vs. 1,007 (960–1009) µm, a basal bulb that is long and moderately developed, elongated vs. fairly small, spoon-shaped, and a shorter distance from anterior end to excretory pore (103 vs. 130 µm), as well as the shorter tail length (112–127 µm vs. 127–160 µm) with tail not showing two slightly visible breaks and tail terminus not pointed vs. rounded when compared to the
|
||||
|
|
@ -140,7 +142,7 @@ population reported by
|
|||
. The a, b, c, and
|
||||
<collectionCode id="668CAE5BCB1EFFD54E55C1A0FBE1FA14" box="[1039,1056,1474,1499]" country="Canada" lsid="urn:lsid:biocol.org:col:13946" name="Royal British Columbia Museum - Herbarium" pageId="2" pageNumber="3" type="Museum">V</collectionCode>
|
||||
% (
|
||||
<tableCitation id="4D1F0325CB1EFFD54E16C1A0FB68FA14" box="[1100,1193,1474,1499]" captionStart="Table 2" captionStartId="9.[167,249,184,214]" captionTargetBox="[177,1419,340,1246]" captionTargetPageId="9" captionText="Table 2. Measurements for TylenCHUS Zeae n. sp. comparison with T. reX and T. SHerianUS female populations. Measurements are in μm and in the form: mean ± standard deviation (range)." pageId="2" pageNumber="3">Table 2</tableCitation>
|
||||
<tableCitation id="4D1F0325CB1EFFD54E16C1A0FB68FA14" box="[1100,1193,1474,1499]" captionStart="Table 2" captionStartId="9.[167,249,184,214]" captionTargetBox="[177,1419,340,1246]" captionTargetPageId="9" captionText="Table 2. Measurements for TylenCHUS Zeae n. sp. comparison with T. reX and T. SHerianUS female populations. Measurements are in μm and in the form: mean ± standard deviation (range)." httpUri="http://table.plazi.org/id/54E26616CB15FFDE4AFDC4DAFD69FEEE" pageId="2" pageNumber="3" tableUuid="54E26616CB15FFDE4AFDC4DAFD69FEEE">Table 2</tableCitation>
|
||||
) values are within the range reported by
|
||||
<bibRefCitation id="640C4B6FCB1EFFD54E02C180FAC8FA34" author="Brzeski, M. W." box="[1112,1289,1506,1531]" pageId="2" pageNumber="3" pagination="387 - 407" refId="ref6890" refString="Brzeski, M. W. 1996. Comments on some known species of the genus TylenChus and description of the TylenChus staChys sp. n. (Nematoda: Tylenchidae). Nematologica 42: 387 - 407." type="journal article" year="1996">Brzeski (1996)</bibRefCitation>
|
||||
. Males of
|
||||
|
|
@ -152,7 +154,7 @@ have longer spicules, 23 to 27 µm vs. 20 to 23 µm.
|
|||
</paragraph>
|
||||
<paragraph id="0022369ECB1EFFD44917C220FE66F8BD" blockId="2.[806,1423,1058,1915]" lastBlockId="3.[165,783,1465,1906]" lastPageId="3" lastPageNumber="4" pageId="2" pageNumber="3">
|
||||
<taxonomicName id="C79D4D1DCB1EFFD54917C220FBC8F994" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[845,1033,1602,1627]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="2" pageNumber="3" phylum="Nematoda" rank="species" species="zeae" status="sp. nov.">
|
||||
<emphasis id="32E9EA8CCB1EFFD54917C220FBC8F994" box="[845,1033,1602,1627]" italics="true" pageId="2" pageNumber="3">TylenChus zeae</emphasis>
|
||||
<emphasis id="32E9EA8CCB1EFFD54917C220FBC8F994" box="[845,1033,1602,1627]" italics="true" pageId="2" pageNumber="3">Tylenchus zeae</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="29DA57F7CB1EFFD54E47C220FBAAF994" box="[1053,1131,1602,1627]" pageId="2" pageNumber="3" rank="species">n. sp.</taxonomicNameLabel>
|
||||
females are close to
|
||||
|
|
@ -216,7 +218,7 @@ in the original description and it is sharply pointed. The gubernaculum is also
|
|||
<paragraph id="0022369ECB1FFFD44B1CC0B2FB03FB26" blockId="3.[326,1435,1232,1417]" box="[326,1218,1232,1257]" pageId="3" pageNumber="4">
|
||||
Figure 1: Scanning electron micrograph (SEM) images of
|
||||
<taxonomicName id="C79D4D1DCB1FFFD44990C0B2FBBBFB26" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[970,1146,1232,1257]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="3" pageNumber="4" phylum="Nematoda" rank="species" species="zeae" status="sp. nov.">
|
||||
<emphasis id="32E9EA8CCB1FFFD44990C0B2FBBBFB26" box="[970,1146,1232,1257]" italics="true" pageId="3" pageNumber="4">TylenChus zeae</emphasis>
|
||||
<emphasis id="32E9EA8CCB1FFFD44990C0B2FBBBFB26" box="[970,1146,1232,1257]" italics="true" pageId="3" pageNumber="4">Tylenchus zeae</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="29DA57F7CB1FFFD44EDBC0B2FB03FB26" box="[1153,1218,1232,1257]" pageId="3" pageNumber="4" rank="species">n. sp.</taxonomicNameLabel>
|
||||
</paragraph>
|
||||
|
|
@ -230,22 +232,22 @@ The other two species that
|
|||
<taxonomicNameLabel id="29DA57F7CB1FFFD44F58C1DBFA84FA1D" box="[1282,1349,1465,1490]" pageId="3" pageNumber="4" rank="species">n. sp.</taxonomicNameLabel>
|
||||
comes close to are
|
||||
<taxonomicName id="C79D4D1DCB1FFFD44982C1BBFAA0FA3D" authority="Bastian, 1865" authorityName="Bastian" authorityYear="1865" box="[984,1377,1497,1522]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="3" pageNumber="4" phylum="Nematoda" rank="species" species="davainei">
|
||||
<emphasis id="32E9EA8CCB1FFFD44982C1BBFB71FA3D" box="[984,1200,1497,1522]" italics="true" pageId="3" pageNumber="4">TylenChus davainei</emphasis>
|
||||
<emphasis id="32E9EA8CCB1FFFD44982C1BBFB71FA3D" box="[984,1200,1497,1522]" italics="true" pageId="3" pageNumber="4">Tylenchus davainei</emphasis>
|
||||
Bastian, 1865
|
||||
</taxonomicName>
|
||||
and
|
||||
<taxonomicName id="C79D4D1DCB1FFFD4496CC19BFB67F9DD" authority="Siddiqi, 1963" authorityName="Siddiqi" authorityYear="1963" box="[822,1190,1529,1554]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="3" pageNumber="4" phylum="Nematoda" rank="species" species="arcuatus">
|
||||
<emphasis id="32E9EA8CCB1FFFD4496CC19BFBCAF9DD" box="[822,1035,1529,1554]" italics="true" pageId="3" pageNumber="4">TylenChus arCuatus</emphasis>
|
||||
<emphasis id="32E9EA8CCB1FFFD4496CC19BFBCAF9DD" box="[822,1035,1529,1554]" italics="true" pageId="3" pageNumber="4">Tylenchus arcuatus</emphasis>
|
||||
<bibRefCitation id="640C4B6FCB1FFFD44E48C19BFB67F9DD" author="Siddiqi, M. R." box="[1042,1190,1529,1554]" pageId="3" pageNumber="4" pagination="170 - 180" refId="ref7800" refString="Siddiqi, M. R. 1963. Four new species of the genus TylenChus Bastian, 1865 (Nematoda) from North India. Zeitschrift fur Parasitenkunde 23: 170 - 180." type="journal article" year="1963">Siddiqi, 1963</bibRefCitation>
|
||||
</taxonomicName>
|
||||
.
|
||||
<taxonomicName id="C79D4D1DCB1FFFD44EEAC19BFA98F9DD" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[1200,1369,1529,1554]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="3" pageNumber="4" phylum="Nematoda" rank="species" species="zeae" status="sp. nov.">
|
||||
<emphasis id="32E9EA8CCB1FFFD44EEAC19BFA98F9DD" box="[1200,1369,1529,1554]" italics="true" pageId="3" pageNumber="4">TylenChus zeae</emphasis>
|
||||
<emphasis id="32E9EA8CCB1FFFD44EEAC19BFA98F9DD" box="[1200,1369,1529,1554]" italics="true" pageId="3" pageNumber="4">Tylenchus zeae</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="29DA57F7CB1FFFD44F05C19BFA5FF9DD" box="[1375,1438,1529,1554]" pageId="3" pageNumber="4" rank="species">n. sp.</taxonomicNameLabel>
|
||||
differs from
|
||||
<taxonomicName id="C79D4D1DCB1FFFD44991C27BFB68F9FD" authorityName="Siddiqi" authorityYear="1963" box="[971,1193,1561,1586]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="3" pageNumber="4" phylum="Nematoda" rank="species" species="arcuatus">
|
||||
<emphasis id="32E9EA8CCB1FFFD44991C27BFB68F9FD" box="[971,1193,1561,1586]" italics="true" pageId="3" pageNumber="4">TylenChus arCuatus</emphasis>
|
||||
<emphasis id="32E9EA8CCB1FFFD44991C27BFB68F9FD" box="[971,1193,1561,1586]" italics="true" pageId="3" pageNumber="4">Tylenchus arcuatus</emphasis>
|
||||
</taxonomicName>
|
||||
by having a longer stylet (20–22 μm vs. 15–17.5 μm). The a value is much higher in
|
||||
<taxonomicName id="C79D4D1DCB1FFFD449C6C23BFC2BF9BD" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[924,1002,1625,1650]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="3" pageNumber="4" phylum="Nematoda" rank="species" species="zeae" status="n. sp.">
|
||||
|
|
@ -255,7 +257,7 @@ by having a longer stylet (20–22 μm vs. 15–17.5 μm). The a value is much h
|
|||
(28–42 vs.
|
||||
<quantity id="C7659B7BCB1FFFD44EF5C23BFAD1F9BD" box="[1199,1296,1625,1650]" metricMagnitude="-1" metricUnit="m" metricValue="6.604" metricValueMax="7.366" metricValueMin="5.842" pageId="3" pageNumber="4" unit="in" value="26.0" valueMax="29.0" valueMin="23.0">23–29 in</quantity>
|
||||
<taxonomicName id="C79D4D1DCB1FFFD44F4DC23BFA51F9BD" authorityName="Siddiqi" authorityYear="1963" box="[1303,1424,1625,1650]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="3" pageNumber="4" phylum="Nematoda" rank="species" species="arcuatus">
|
||||
<emphasis id="32E9EA8CCB1FFFD44F4DC23BFA51F9BD" box="[1303,1424,1625,1650]" italics="true" pageId="3" pageNumber="4">T. arCuatus</emphasis>
|
||||
<emphasis id="32E9EA8CCB1FFFD44F4DC23BFA51F9BD" box="[1303,1424,1625,1650]" italics="true" pageId="3" pageNumber="4">T. arcuatus</emphasis>
|
||||
</taxonomicName>
|
||||
), the b value for
|
||||
<taxonomicName id="C79D4D1DCB1FFFD449BCC21BFBF6F95D" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[998,1079,1657,1682]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="3" pageNumber="4" phylum="Nematoda" rank="species" species="zeae" status="n. sp.">
|
||||
|
|
@ -264,7 +266,7 @@ by having a longer stylet (20–22 μm vs. 15–17.5 μm). The a value is much h
|
|||
<taxonomicNameLabel id="29DA57F7CB1FFFD44E1AC21BFB43F95D" box="[1088,1154,1657,1682]" pageId="3" pageNumber="4" rank="species">n. sp.</taxonomicNameLabel>
|
||||
is 7.0 (6–8), whereas for
|
||||
<taxonomicName id="C79D4D1DCB1FFFD4496CC2FBFC71F97D" authorityName="Siddiqi" authorityYear="1963" box="[822,944,1689,1714]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="3" pageNumber="4" phylum="Nematoda" rank="species" species="arcuatus">
|
||||
<emphasis id="32E9EA8CCB1FFFD4496CC2FBFC71F97D" box="[822,944,1689,1714]" italics="true" pageId="3" pageNumber="4">T. arCuatus</emphasis>
|
||||
<emphasis id="32E9EA8CCB1FFFD4496CC2FBFC71F97D" box="[822,944,1689,1714]" italics="true" pageId="3" pageNumber="4">T. arcuatus</emphasis>
|
||||
</taxonomicName>
|
||||
it is 6.0 (4.9–6.0).
|
||||
<taxonomicName id="C79D4D1DCB1FFFD44EC3C2FBFB2FF97D" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[1177,1262,1689,1714]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="3" pageNumber="4" phylum="Nematoda" rank="species" species="zeae" status="n. sp.">
|
||||
|
|
@ -293,7 +295,7 @@ have a larger a value (35.0–39.0 vs. 28.9- 35.2) than
|
|||
<paragraph id="0022369ECB18FFD34B6DC04FFE2FFB09" blockId="4.[311,1405,1069,1222]" pageId="4" pageNumber="5">
|
||||
Figure 2: Photomicrographs of
|
||||
<taxonomicName id="C79D4D1DCB18FFD348CAC04FFC81FB89" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[656,832,1069,1094]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="4" pageNumber="5" phylum="Nematoda" rank="species" species="zeae" status="sp. nov.">
|
||||
<emphasis id="32E9EA8CCB18FFD348CAC04FFC81FB89" box="[656,832,1069,1094]" italics="true" pageId="4" pageNumber="5">TylenChus zeae</emphasis>
|
||||
<emphasis id="32E9EA8CCB18FFD348CAC04FFC81FB89" box="[656,832,1069,1094]" italics="true" pageId="4" pageNumber="5">Tylenchus zeae</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="29DA57F7CB18FFD34912C04FFC4BFB89" box="[840,906,1069,1094]" pageId="4" pageNumber="5" rank="species">n. sp.</taxonomicNameLabel>
|
||||
males and females. A–B: Anterior end with arrows pointing toward the excretory pore; C: Excretory pore; D: Areolated lateral field; E: Entire female body; F: Female basal bulb; G: Female gonad; H–I: female posterior end with arrow pointing the anal area (H); J: Female vulva region with arrow pointing toward the spermatheca; K: Male spicule.
|
||||
|
|
@ -335,7 +337,7 @@ material
|
|||
</emphasis>
|
||||
</paragraph>
|
||||
<paragraph id="0022369ECB18FFD34ACDC2F9FE3CF93B" blockId="4.[151,766,1691,1908]" pageId="4" pageNumber="5">
|
||||
<materialsCitation id="B0F53CC3CB18FFD34ACDC2F9FE3CF93B" pageId="4" pageNumber="5">
|
||||
<materialsCitation id="B0F53CC3CB18FFD34ACDC2F9FE3CF93B" ID-GBIF-Occurrence="4879858302" pageId="4" pageNumber="5">
|
||||
<emphasis id="32E9EA8CCB18FFD34ACDC2F9FEB6F97B" box="[151,375,1691,1716]" italics="true" pageId="4" pageNumber="5">
|
||||
<typeStatus id="DF26883CCB18FFD34ACDC2F9FF3EF97B" box="[151,255,1691,1716]" pageId="4" pageNumber="5" type="holotype">HOlOtype</typeStatus>
|
||||
(Female):
|
||||
|
|
@ -347,7 +349,7 @@ Slide T-
|
|||
.
|
||||
</materialsCitation>
|
||||
</paragraph>
|
||||
<materialsCitation id="B0F53CC3CB18FFD34AE7C299FDE1F8BB" pageId="4" pageNumber="5">
|
||||
<materialsCitation id="B0F53CC3CB18FFD34AE7C299FDE1F8BB" ID-GBIF-Occurrence="4879858301" pageId="4" pageNumber="5">
|
||||
<paragraph id="0022369ECB18FFD34AE7C299FD07F8FB" blockId="4.[151,766,1691,1908]" pageId="4" pageNumber="5">
|
||||
<emphasis id="32E9EA8CCB18FFD34AE7C299FDF8F8DB" box="[189,569,1787,1812]" italics="true" pageId="4" pageNumber="5">
|
||||
<typeStatus id="DF26883CCB18FFD34AE7C299FEF0F8DB" box="[189,305,1787,1812]" pageId="4" pageNumber="5" type="paratype">Paratypes</typeStatus>
|
||||
|
|
@ -387,12 +389,12 @@ Amplification and sequencing of 18S rRNA resulted in a 1605 bp fragment from PCR
|
|||
<geoCoordinate id="65A95059CB18FFD34E9EC258FB39F99C" box="[1220,1272,1594,1619]" degrees="1.2" direction="south" orientation="latitude" pageId="4" pageNumber="5" precision="5555" value="-1.2">S1.2</geoCoordinate>
|
||||
and 18Sr2b were used to generate fragments of 555 to 575 bp. Because the longer fragment contained more variable sites for comparison, that sequence was used for subsequent phylogenetic analysis. BlastN comparison to sequences in GenBank resulted in the highest similarity to
|
||||
<taxonomicName id="C79D4D1DCB18FFD34E7AC298FB32F8DC" authorityName="Lownsbery & Lownsbery" authorityYear="1985" baseAuthorityName="Brzeski" baseAuthorityYear="1963" box="[1056,1267,1786,1811]" class="Chromadorea" family="Tylenchidae" genus="Filenchus" kingdom="Animalia" order="Rhabditida" pageId="4" pageNumber="5" phylum="Nematoda" rank="species" species="vulgaris">
|
||||
<emphasis id="32E9EA8CCB18FFD34E7AC298FB32F8DC" box="[1056,1267,1786,1811]" italics="true" pageId="4" pageNumber="5">FilenChus vulgaris</emphasis>
|
||||
<emphasis id="32E9EA8CCB18FFD34E7AC298FB32F8DC" box="[1056,1267,1786,1811]" italics="true" pageId="4" pageNumber="5">Filenchus vulgaris</emphasis>
|
||||
</taxonomicName>
|
||||
(KX156307), differing at 32 bp (2.24%) and to
|
||||
<emphasis id="32E9EA8CCB18FFD34EFBC378FA4FF8FC" box="[1185,1422,1818,1843]" italics="true" pageId="4" pageNumber="5">
|
||||
<taxonomicName id="C79D4D1DCB18FFD34EFBC378FAD5F8FC" authorityName="Bastiian" authorityYear="1865" box="[1185,1300,1818,1843]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="4" pageNumber="5" phylum="Nematoda" rank="genus">TylenChus</taxonomicName>
|
||||
arCuCatus
|
||||
<taxonomicName id="C79D4D1DCB18FFD34EFBC378FAD5F8FC" authorityName="Bastiian" authorityYear="1865" box="[1185,1300,1818,1843]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="4" pageNumber="5" phylum="Nematoda" rank="genus">Tylenchus</taxonomicName>
|
||||
arcucatus
|
||||
</emphasis>
|
||||
(EU306348), differing at 36 bp (2.24%). For the 18S rRNA gene, 59 sequences from 44 taxa were used to construct a 1598 bp alignment used for Bayesian inference. In the 18S tree (
|
||||
<figureCitation id="98A62A1BCB19FFD24BB8C247FDE4F9F1" box="[482,549,1573,1598]" captionStart="Figure 4" captionStartId="6.[311,375,1748,1773]" captionTargetBox="[258,1223,191,1702]" captionTargetId="figure-7@6.[258,1314,184,1706]" captionTargetPageId="6" captionText="Figure 4: Phylogenetic relationships of TylenChus zeae n. sp. with other select Tylenchidae, as inferred from a 1585 bp alignment of 18S rRNA sequences, according to the GTR + I + G model of nucleotide substitution and incorporated into MrBayes (MB) as described. A 50% majority rule consensus tree was generated with posterior probabilities (PP) shown on appropriate branches, with AphelenChOides besseyi as the outgroup. New sequences are indicated in bold." figureDoi="http://doi.org/10.5281/zenodo.11644702" httpUri="https://zenodo.org/record/11644702/files/figure.png" pageId="5" pageNumber="6">Fig. 4</figureCitation>
|
||||
|
|
@ -402,19 +404,19 @@ arCuCatus
|
|||
</taxonomicName>
|
||||
<taxonomicNameLabel id="29DA57F7CB19FFD248CEC247FD16F9F1" box="[660,727,1573,1598]" pageId="5" pageNumber="6" rank="species">n. sp.</taxonomicNameLabel>
|
||||
and two sequences from
|
||||
<emphasis id="32E9EA8CCB19FFD24BF2C227FDF2F991" box="[424,563,1605,1630]" italics="true" pageId="5" pageNumber="6">T. arCtuatus</emphasis>
|
||||
<emphasis id="32E9EA8CCB19FFD24BF2C227FDF2F991" box="[424,563,1605,1630]" italics="true" pageId="5" pageNumber="6">T. arctuatus</emphasis>
|
||||
grouped together but were unresolved. All three of these sequences appeared within a larger clade that included a third
|
||||
<taxonomicName id="C79D4D1DCB19FFD24AFCC2C7FEE9F971" authorityName="Siddiqi" authorityYear="1963" box="[166,296,1701,1726]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="5" pageNumber="6" phylum="Nematoda" rank="species" species="arcuatus">
|
||||
<emphasis id="32E9EA8CCB19FFD24AFCC2C7FEE9F971" box="[166,296,1701,1726]" italics="true" pageId="5" pageNumber="6">T. arCuatus</emphasis>
|
||||
<emphasis id="32E9EA8CCB19FFD24AFCC2C7FEE9F971" box="[166,296,1701,1726]" italics="true" pageId="5" pageNumber="6">T. arcuatus</emphasis>
|
||||
</taxonomicName>
|
||||
sequence, an unspecified
|
||||
<taxonomicName id="C79D4D1DCB19FFD24833C2C7FCCBF971" box="[617,778,1701,1726]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="5" pageNumber="6" phylum="Nematoda" rank="species" species="undetermined">
|
||||
<emphasis id="32E9EA8CCB19FFD24833C2C7FD1DF971" box="[617,732,1701,1726]" italics="true" pageId="5" pageNumber="6">TylenChus</emphasis>
|
||||
<emphasis id="32E9EA8CCB19FFD24833C2C7FD1DF971" box="[617,732,1701,1726]" italics="true" pageId="5" pageNumber="6">Tylenchus</emphasis>
|
||||
sp.
|
||||
</taxonomicName>
|
||||
, several
|
||||
<taxonomicName id="C79D4D1DCB19FFD24B5AC2A7FE6CF911" box="[256,429,1733,1758]" class="Chromadorea" family="Tylenchidae" genus="Filenchus" kingdom="Animalia" order="Rhabditida" pageId="5" pageNumber="6" phylum="Nematoda" rank="species" species="undetermined">
|
||||
<emphasis id="32E9EA8CCB19FFD24B5AC2A7FEACF911" box="[256,365,1733,1758]" italics="true" pageId="5" pageNumber="6">FilenChus</emphasis>
|
||||
<emphasis id="32E9EA8CCB19FFD24B5AC2A7FEACF911" box="[256,365,1733,1758]" italics="true" pageId="5" pageNumber="6">Filenchus</emphasis>
|
||||
spp.
|
||||
</taxonomicName>
|
||||
, and a subclade containing
|
||||
|
|
@ -431,7 +433,7 @@ and
|
|||
<paragraph id="0022369ECB19FFD24B1CC110FB60FA04" blockId="5.[326,1364,1394,1483]" pageId="5" pageNumber="6">
|
||||
Figure 3: Line drawings of
|
||||
<taxonomicName id="C79D4D1DCB19FFD24830C110FCDBFA44" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[618,794,1394,1419]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="5" pageNumber="6" phylum="Nematoda" rank="species" species="zeae" status="sp. nov.">
|
||||
<emphasis id="32E9EA8CCB19FFD24830C110FCDBFA44" box="[618,794,1394,1419]" italics="true" pageId="5" pageNumber="6">TylenChus zeae</emphasis>
|
||||
<emphasis id="32E9EA8CCB19FFD24830C110FCDBFA44" box="[618,794,1394,1419]" italics="true" pageId="5" pageNumber="6">Tylenchus zeae</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="29DA57F7CB19FFD24978C110FCA5FA44" box="[802,868,1394,1419]" pageId="5" pageNumber="6" rank="species">n. sp.</taxonomicNameLabel>
|
||||
A: Female pharyngeal region; B: Female lip region showing stylet; C: Areolated lateral field; D: Male spicule, gubernaculum, and bursa. E: Vulval region showing vulva, uterus, and spermatheca; F–G: female tails.
|
||||
|
|
@ -442,14 +444,14 @@ For 28S rRNA, amplification from five individuals resulted in a 738 bp fragment.
|
|||
<specimenCount id="169BFD17CB19FFD24BD2C327FDF3F891" box="[392,562,1861,1886]" count="5" pageId="5" pageNumber="6" type="generic">five specimens</specimenCount>
|
||||
were of insufficient quality to generate independent contigs, although partial reads did match the full-length D2-D3 obtained from the high-quality sequence. The representative sequence used for subsequent analysis was 79.77% similar to one from an undescribed
|
||||
<taxonomicName id="C79D4D1DCB19FFD24EA2C2E7FA5CF951" box="[1272,1437,1669,1694]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="5" pageNumber="6" phylum="Nematoda" rank="species" species="undetermined">
|
||||
<emphasis id="32E9EA8CCB19FFD24EA2C2E7FAAAF951" box="[1272,1387,1669,1694]" italics="true" pageId="5" pageNumber="6">TylenChus</emphasis>
|
||||
<emphasis id="32E9EA8CCB19FFD24EA2C2E7FAAAF951" box="[1272,1387,1669,1694]" italics="true" pageId="5" pageNumber="6">Tylenchus</emphasis>
|
||||
sp.
|
||||
</taxonomicName>
|
||||
CD207 from palm soil in
|
||||
<collectingRegion id="C259F87CCB19FFD24E06C2C7FB6BF971" box="[1116,1194,1701,1726]" country="United States of America" name="Florida" pageId="5" pageNumber="6">Florida</collectingRegion>
|
||||
(JX291130), differing at 140 bp. The highest pairwise similarity among all sequences available in GenBank (82.95%) was to
|
||||
<taxonomicName id="C79D4D1DCB19FFD2493FC367FBB0F8D1" authorityName="Inserra, Vovlas & Golden" authorityYear="1979" box="[869,1137,1797,1822]" class="Chromadorea" family="Hoplolaimidae" genus="Helicotylenchus" kingdom="Animalia" order="Rhabditida" pageId="5" pageNumber="6" phylum="Nematoda" rank="species" species="oleae">
|
||||
<emphasis id="32E9EA8CCB19FFD2493FC367FBB0F8D1" box="[869,1137,1797,1822]" italics="true" pageId="5" pageNumber="6">HeliCOtylenChus Oleae</emphasis>
|
||||
<emphasis id="32E9EA8CCB19FFD2493FC367FBB0F8D1" box="[869,1137,1797,1822]" italics="true" pageId="5" pageNumber="6">HelicOtylenchus Oleae</emphasis>
|
||||
</taxonomicName>
|
||||
(MF287653). For 28S phylogenetic analysis, 69
|
||||
<taxonomicName id="C79D4D1DCB19FFD24ED8C347FACBF8F1" authorityName="Orley" authorityYear="1880" box="[1154,1290,1829,1854]" class="Chromadorea" family="Tylenchidae" kingdom="Animalia" order="Rhabditida" pageId="5" pageNumber="6" phylum="Nematoda" rank="family">Tylenchidae</taxonomicName>
|
||||
|
|
@ -457,27 +459,27 @@ sequences were used to construct an 822 bp alignment. In the inferred 28S MrBaye
|
|||
<figureCitation id="98A62A1BCB14FFDF4B8BC108FDD0FA4C" box="[465,529,1386,1411]" captionStart="Figure 5" captionStartId="7.[326,390,1758,1783]" captionTargetBox="[234,1317,184,1715]" captionTargetId="figure-12@7.[229,1374,184,1716]" captionTargetPageId="7" captionText="Figure 5: Phylogenetic relationships of TylenChus zeae n. sp. with other select Tylenchidae, as inferred from an 822 bp alignment of 28S rRNA sequences, according to the GTR + I + G model of nucleotide substitution and incorporated into MrBayes (MB) as described. A 50% majority rule consensus tree was generated with posterior probabilities (PP) shown on appropriate branches, with BursaphelenChus muCrOnatus as the outgroup. New sequences are indicated in bold." figureDoi="http://doi.org/10.5281/zenodo.11644704" httpUri="https://zenodo.org/record/11644704/files/figure.png" pageId="8" pageNumber="9">Fig. 5</figureCitation>
|
||||
), the
|
||||
<taxonomicName id="C79D4D1DCB14FFDF4814C108FD3CFA4C" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[590,765,1386,1411]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="species" species="zeae" status="sp. nov.">
|
||||
<emphasis id="32E9EA8CCB14FFDF4814C108FD3CFA4C" box="[590,765,1386,1411]" italics="true" pageId="8" pageNumber="9">TylenChus zeae</emphasis>
|
||||
<emphasis id="32E9EA8CCB14FFDF4814C108FD3CFA4C" box="[590,765,1386,1411]" italics="true" pageId="8" pageNumber="9">Tylenchus zeae</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="29DA57F7CB14FFDF4ACDC1E8FF1BFA6C" box="[151,218,1418,1443]" pageId="8" pageNumber="9" rank="species">n. sp.</taxonomicNameLabel>
|
||||
grouped with an undescribed
|
||||
<taxonomicName id="C79D4D1DCB14FFDF4812C1E8FD11FA6C" authorityName="Orley" authorityYear="1880" box="[584,720,1418,1443]" class="Chromadorea" family="Tylenchidae" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="family">Tylenchidae</taxonomicName>
|
||||
sp. (JX291130) with strong support (PP = 1.00). However, the genus did not form a monophyletic group, with
|
||||
<taxonomicName id="C79D4D1DCB14FFDF4ACDC188FED9F9CC" authorityName="Siddiqi" authorityYear="1963" box="[151,280,1514,1539]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="species" species="arcuatus">
|
||||
<emphasis id="32E9EA8CCB14FFDF4ACDC188FED9F9CC" box="[151,280,1514,1539]" italics="true" pageId="8" pageNumber="9">T. arCuatus</emphasis>
|
||||
<emphasis id="32E9EA8CCB14FFDF4ACDC188FED9F9CC" box="[151,280,1514,1539]" italics="true" pageId="8" pageNumber="9">T. arcuatus</emphasis>
|
||||
</taxonomicName>
|
||||
and other
|
||||
<taxonomicName id="C79D4D1DCB14FFDF4BC7C188FDD1F9CC" authorityName="Zeae" authorityYear="2023" box="[413,528,1514,1539]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="genus">
|
||||
<emphasis id="32E9EA8CCB14FFDF4BC7C188FDD1F9CC" box="[413,528,1514,1539]" italics="true" pageId="8" pageNumber="9">TylenChus</emphasis>
|
||||
<emphasis id="32E9EA8CCB14FFDF4BC7C188FDD1F9CC" box="[413,528,1514,1539]" italics="true" pageId="8" pageNumber="9">Tylenchus</emphasis>
|
||||
</taxonomicName>
|
||||
populations forming clades with
|
||||
<taxonomicName id="C79D4D1DCB14FFDF4B67C268FDD8F9EC" box="[317,537,1546,1571]" pageId="8" pageNumber="9">
|
||||
<emphasis id="32E9EA8CCB14FFDF4B67C268FE6BF9EC" box="[317,426,1546,1571]" italics="true" pageId="8" pageNumber="9">FilenChus</emphasis>
|
||||
<emphasis id="32E9EA8CCB14FFDF4B67C268FE6BF9EC" box="[317,426,1546,1571]" italics="true" pageId="8" pageNumber="9">Filenchus</emphasis>
|
||||
species
|
||||
</taxonomicName>
|
||||
and others with
|
||||
<taxonomicName id="C79D4D1DCB14FFDF4ACDC248FE4EF98C" authority="Crenatae." authorityName="Crenatae." box="[151,399,1578,1603]" class="Chromadorea" family="Anguinidae" genus="Litylenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="genus">
|
||||
<emphasis id="32E9EA8CCB14FFDF4ACDC248FE49F98C" box="[151,392,1578,1603]" italics="true" pageId="8" pageNumber="9">LitylenChus Crenatae</emphasis>
|
||||
<emphasis id="32E9EA8CCB14FFDF4ACDC248FE49F98C" box="[151,392,1578,1603]" italics="true" pageId="8" pageNumber="9">Litylenchus crenatae</emphasis>
|
||||
.
|
||||
</taxonomicName>
|
||||
This finding is consistent with the polyphyletic groupings observed by others (
|
||||
|
|
@ -494,14 +496,14 @@ This finding is consistent with the polyphyletic groupings observed by others (
|
|||
<paragraph id="0022369ECB1AFFD14B6DC2B6FB3EF8A2" blockId="6.[311,1414,1748,1901]" pageId="6" pageNumber="7">
|
||||
Figure 4: Phylogenetic relationships of
|
||||
<taxonomicName id="C79D4D1DCB1AFFD148BFC2B6FC54F922" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[741,917,1748,1773]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="6" pageNumber="7" phylum="Nematoda" rank="species" species="zeae" status="sp. nov.">
|
||||
<emphasis id="32E9EA8CCB1AFFD148BFC2B6FC54F922" box="[741,917,1748,1773]" italics="true" pageId="6" pageNumber="7">TylenChus zeae</emphasis>
|
||||
<emphasis id="32E9EA8CCB1AFFD148BFC2B6FC54F922" box="[741,917,1748,1773]" italics="true" pageId="6" pageNumber="7">Tylenchus zeae</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="29DA57F7CB1AFFD149C7C2B6FC1EF922" box="[925,991,1748,1773]" pageId="6" pageNumber="7" rank="species">n. sp.</taxonomicNameLabel>
|
||||
with other select
|
||||
<taxonomicName id="C79D4D1DCB1AFFD14EF3C2B6FAF7F922" authorityName="Orley" authorityYear="1880" box="[1193,1334,1748,1773]" class="Chromadorea" family="Tylenchidae" kingdom="Animalia" order="Rhabditida" pageId="6" pageNumber="7" phylum="Nematoda" rank="family">Tylenchidae</taxonomicName>
|
||||
, as inferred from a 1585 bp alignment of 18S rRNA sequences, according to the GTR + I + G model of nucleotide substitution and incorporated into MrBayes (MB) as described. A 50% majority rule consensus tree was generated with posterior probabilities (PP) shown on appropriate branches, with
|
||||
<taxonomicName id="C79D4D1DCB1AFFD14B34C336FD43F8A2" authorityName="Christie" authorityYear="1942" box="[366,642,1876,1901]" class="Chromadorea" family="Aphelenchoididae" genus="Aphelenchoides" kingdom="Animalia" order="Rhabditida" pageId="6" pageNumber="7" phylum="Nematoda" rank="species" species="besseyi">
|
||||
<emphasis id="32E9EA8CCB1AFFD14B34C336FD43F8A2" box="[366,642,1876,1901]" italics="true" pageId="6" pageNumber="7">AphelenChOides besseyi</emphasis>
|
||||
<emphasis id="32E9EA8CCB1AFFD14B34C336FD43F8A2" box="[366,642,1876,1901]" italics="true" pageId="6" pageNumber="7">AphelenchOides besseyi</emphasis>
|
||||
</taxonomicName>
|
||||
as the outgroup. New sequences are indicated in bold.
|
||||
</paragraph>
|
||||
|
|
@ -510,19 +512,19 @@ as the outgroup. New sequences are indicated in bold.
|
|||
<paragraph id="0022369ECB1BFFD04B1CC2BCFA90F8B8" blockId="7.[326,1429,1758,1911]" pageId="7" pageNumber="8">
|
||||
Figure 5: Phylogenetic relationships of
|
||||
<taxonomicName id="C79D4D1DCB1BFFD048AEC2BCFC65F938" authority="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar, 2023" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[756,932,1758,1783]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="7" pageNumber="8" phylum="Nematoda" rank="species" species="zeae" status="sp. nov.">
|
||||
<emphasis id="32E9EA8CCB1BFFD048AEC2BCFC65F938" box="[756,932,1758,1783]" italics="true" pageId="7" pageNumber="8">TylenChus zeae</emphasis>
|
||||
<emphasis id="32E9EA8CCB1BFFD048AEC2BCFC65F938" box="[756,932,1758,1783]" italics="true" pageId="7" pageNumber="8">Tylenchus zeae</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicNameLabel id="29DA57F7CB1BFFD049F7C2BCFC2FF938" box="[941,1006,1758,1783]" pageId="7" pageNumber="8" rank="species">n. sp.</taxonomicNameLabel>
|
||||
with other select
|
||||
<taxonomicName id="C79D4D1DCB1BFFD04EE2C2BCFA84F938" authorityName="Orley" authorityYear="1880" box="[1208,1349,1758,1783]" class="Chromadorea" family="Tylenchidae" kingdom="Animalia" order="Rhabditida" pageId="7" pageNumber="8" phylum="Nematoda" rank="family">Tylenchidae</taxonomicName>
|
||||
, as inferred from an 822 bp alignment of 28S rRNA sequences, according to the GTR + I + G model of nucleotide substitution and incorporated into MrBayes (MB) as described. A 50% majority rule consensus tree was generated with posterior probabilities (PP) shown on appropriate branches, with
|
||||
<taxonomicName id="C79D4D1DCB1BFFD04B27C33CFD15F8B8" authorityName="Mamiya & Enda" authorityYear="1979" box="[381,724,1886,1911]" class="Chromadorea" family="Aphelenchoididae" genus="Bursaphelenchus" kingdom="Animalia" order="Rhabditida" pageId="7" pageNumber="8" phylum="Nematoda" rank="species" species="mucronatus">
|
||||
<emphasis id="32E9EA8CCB1BFFD04B27C33CFD15F8B8" box="[381,724,1886,1911]" italics="true" pageId="7" pageNumber="8">BursaphelenChus muCrOnatus</emphasis>
|
||||
<emphasis id="32E9EA8CCB1BFFD04B27C33CFD15F8B8" box="[381,724,1886,1911]" italics="true" pageId="7" pageNumber="8">Bursaphelenchus mucrOnatus</emphasis>
|
||||
</taxonomicName>
|
||||
as the outgroup. New sequences are indicated in bold.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<caption id="54E26616CB14FFDF4ACDC4DAFCE6FF34" pageId="8" pageNumber="9" startId="8.[151,233,184,214]" targetBox="[162,1408,303,1277]" targetIsTable="true" targetPageId="8" targetType="table">
|
||||
<caption id="54E26616CB14FFDF4ACDC4DAFCE6FF34" ID-Table-UUID="54E26616CB14FFDF4ACDC4DAFCE6FF34" httpUri="http://table.plazi.org/id/54E26616CB14FFDF4ACDC4DAFCE6FF34" pageId="8" pageNumber="9" startId="8.[151,233,184,214]" targetBox="[162,1408,303,1277]" targetIsTable="true" targetPageId="8" targetType="table">
|
||||
<paragraph id="0022369ECB14FFDF4ACDC4DAFCE6FF34" blockId="8.[151,1385,184,251]" pageId="8" pageNumber="9">
|
||||
Table 1. Morphometrics of
|
||||
<taxonomicName id="C79D4D1DCB14FFDF487CC4DAFCC8FF19" authority="Zeae" authorityName="Zeae" authorityYear="2023" box="[550,777,184,214]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="genus" status="n. sp.">
|
||||
|
|
@ -643,7 +645,7 @@ For mitochondrial
|
|||
<emphasis id="32E9EA8CCB14FFDF4BF0C2C8FE16F90C" box="[426,471,1706,1731]" italics="true" pageId="8" pageNumber="9">COI</emphasis>
|
||||
, fragments of 416 bp were amplified from two nematodes, differing from each other at a single nucleotide. Sequence similarity was highest (90.38%) with
|
||||
<taxonomicName id="C79D4D1DCB14FFDF48DCC368FF3FF88C" authorityName="Siddiqi" authorityYear="1963" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="species" species="arcuatus">
|
||||
<emphasis id="32E9EA8CCB14FFDF48DCC368FF3FF88C" italics="true" pageId="8" pageNumber="9">TylenChus arCuatus</emphasis>
|
||||
<emphasis id="32E9EA8CCB14FFDF48DCC368FF3FF88C" italics="true" pageId="8" pageNumber="9">Tylenchus arcuatus</emphasis>
|
||||
</taxonomicName>
|
||||
from
|
||||
<collectingCountry id="788A760ECB14FFDF4B1EC348FE48F88C" box="[324,393,1834,1859]" name="China" pageId="8" pageNumber="9">China</collectingCountry>
|
||||
|
|
@ -651,11 +653,11 @@ from
|
|||
<emphasis id="32E9EA8CCB14FFDF49ECC108FC25FA4C" box="[950,996,1386,1411]" italics="true" pageId="8" pageNumber="9">COI</emphasis>
|
||||
gene tree contained 18 sequences from fewer taxa but with strong branch support for individual clades; the SC population appeared as a sister group to
|
||||
<taxonomicName id="C79D4D1DCB14FFDF4981C1A8FB9EFA2C" authorityName="Siddiqi" authorityYear="1963" box="[987,1119,1482,1507]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="species" species="arcuatus">
|
||||
<emphasis id="32E9EA8CCB14FFDF4981C1A8FB9EFA2C" box="[987,1119,1482,1507]" italics="true" pageId="8" pageNumber="9">T. arCuatus</emphasis>
|
||||
<emphasis id="32E9EA8CCB14FFDF4981C1A8FB9EFA2C" box="[987,1119,1482,1507]" italics="true" pageId="8" pageNumber="9">T. arcuatus</emphasis>
|
||||
</taxonomicName>
|
||||
and was clearly resolved from
|
||||
<taxonomicName id="C79D4D1DCB14FFDF4931C188FB84F9CC" authorityName="Lownsbery & Lownsbery" authorityYear="1985" baseAuthorityName="Brzeski" baseAuthorityYear="1963" box="[875,1093,1514,1539]" class="Chromadorea" family="Tylenchidae" genus="Filenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="species" species="vulgaris">
|
||||
<emphasis id="32E9EA8CCB14FFDF4931C188FB84F9CC" box="[875,1093,1514,1539]" italics="true" pageId="8" pageNumber="9">FilenChus vulgaris</emphasis>
|
||||
<emphasis id="32E9EA8CCB14FFDF4931C188FB84F9CC" box="[875,1093,1514,1539]" italics="true" pageId="8" pageNumber="9">Filenchus vulgaris</emphasis>
|
||||
</taxonomicName>
|
||||
(
|
||||
<figureCitation id="98A62A1BCB14FFDF4E00C188FB5CF9CC" box="[1114,1181,1514,1539]" captionStart="Figure 6" captionStartId="10.[311,375,1038,1063]" captionTargetBox="[359,1045,185,995]" captionTargetId="figure-8@10.[358,1215,184,996]" captionTargetPageId="10" captionText="Figure 6: Phylogenetic relationships of TylenChus zeae n. sp. with other select Tylenchidae, as inferred from a 418 bp alignment of mitochondrial COI sequences, according to the GTR + I + G model of nucleotide substitution and incorporated into MrBayes (MB) as described. A 50% majority rule consensus tree was generated with posterior probabilities (PP) shown on appropriate branches, with BursaphelenChus COniCaudatus as the outgroup. New sequences are indicated in bold." figureDoi="http://doi.org/10.5281/zenodo.11644706" httpUri="https://zenodo.org/record/11644706/files/figure.png" pageId="8" pageNumber="9">Fig. 6</figureCitation>
|
||||
|
|
@ -668,11 +670,11 @@ gene sequences prevented further cross-comparison of the
|
|||
<taxonomicNameLabel id="29DA57F7CB14FFDF4E8FC248FADEF98C" box="[1237,1311,1578,1603]" pageId="8" pageNumber="9" rank="species">n. sp.</taxonomicNameLabel>
|
||||
position relative to most other species present within the 18S rRNA gene tree.
|
||||
<taxonomicName id="C79D4D1DCB14FFDF4E63C208FB32F94C" authorityName="Kantor & Handoo & Subbotin & Mowery & Hult & Rogers & Skantar" authorityYear="2023" box="[1081,1267,1642,1667]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="species" species="zeae">
|
||||
<emphasis id="32E9EA8CCB14FFDF4E63C208FB32F94C" box="[1081,1267,1642,1667]" italics="true" pageId="8" pageNumber="9">TylenChus zeae</emphasis>
|
||||
<emphasis id="32E9EA8CCB14FFDF4E63C208FB32F94C" box="[1081,1267,1642,1667]" italics="true" pageId="8" pageNumber="9">Tylenchus zeae</emphasis>
|
||||
</taxonomicName>
|
||||
differs from its nearest neighbor in the 18S tree,
|
||||
<emphasis id="32E9EA8CCB14FFDF4EB8C2E8FAAEF96C" box="[1250,1391,1674,1699]" italics="true" pageId="8" pageNumber="9">
|
||||
<taxonomicName id="C79D4D1DCB14FFDF4EB8C2E8FAAAF96C" authorityName="Siddiqi" authorityYear="1963" box="[1250,1387,1674,1699]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="species" species="arcuatus">T. arCuatus</taxonomicName>
|
||||
<taxonomicName id="C79D4D1DCB14FFDF4EB8C2E8FAAAF96C" authorityName="Siddiqi" authorityYear="1963" box="[1250,1387,1674,1699]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="species" species="arcuatus">T. arcuatus</taxonomicName>
|
||||
,
|
||||
</emphasis>
|
||||
at 2.5% pairwise difference and at 9.9% in the
|
||||
|
|
@ -683,7 +685,7 @@ In comparison,
|
|||
</taxonomicName>
|
||||
, which is also poorly resolved from
|
||||
<taxonomicName id="C79D4D1DCB14FFDF498DC288FB9CF8CC" authorityName="Siddiqi" authorityYear="1963" box="[983,1117,1770,1795]" class="Chromadorea" family="Tylenchidae" genus="Tylenchus" kingdom="Animalia" order="Rhabditida" pageId="8" pageNumber="9" phylum="Nematoda" rank="species" species="arcuatus">
|
||||
<emphasis id="32E9EA8CCB14FFDF498DC288FB9CF8CC" box="[983,1117,1770,1795]" italics="true" pageId="8" pageNumber="9">T. arCuatus</emphasis>
|
||||
<emphasis id="32E9EA8CCB14FFDF498DC288FB9CF8CC" box="[983,1117,1770,1795]" italics="true" pageId="8" pageNumber="9">T. arcuatus</emphasis>
|
||||
</taxonomicName>
|
||||
in the18S tree, differs at 0.6% in this gene and at 16.1% in
|
||||
<emphasis id="32E9EA8CCB14FFDF4EE2C368FB24F8EC" box="[1208,1253,1802,1827]" italics="true" pageId="8" pageNumber="9">COI</emphasis>
|
||||
|
|
|
|||
Loading…
Add table
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Reference in a new issue