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@ -55,11 +56,11 @@ urn:lsid:zoobank.org:act:
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<paragraph id="8B9A368BFFC1EC2BFD6CF9CDFC22F9ED" blockId="15.[367,1222,1551,1649]" box="[690,898,1622,1649]" pageId="15" pageNumber="91">
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<figureCitation id="131E2A0EFFC1EC2BFD6CF9CDFCAFF9ED" box="[690,783,1622,1649]" captionStart="Fig" captionStartId="4.[191,234,1961,1987]" captionTargetBox="[291,1382,1113,1903]" captionTargetId="figure-263@4.[189,1398,1090,1923]" captionTargetPageId="4" captionText="Fig. 1.Dorsal habitus of male.A. Apoderiger torticornisJeannel, 1960,holotype (MNHN).B. Apoderiger banari sp. nov., holotype (PCPH)." pageId="15" pageNumber="91">Figs 1B</figureCitation>
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<figureCitation id="131E2A0EFFC1EC2BFD6CF9CDFCAFF9ED" box="[690,783,1622,1649]" captionStart="Fig" captionStartId="4.[191,234,1961,1987]" captionTargetBox="[291,1382,1113,1903]" captionTargetId="figure-263@4.[189,1398,1090,1923]" captionTargetPageId="4" captionText="Fig. 1.Dorsal habitus of male.A. Apoderiger torticornisJeannel, 1960,holotype (MNHN).B. Apoderiger banari sp. nov., holotype (PCPH)." figureDoi="http://doi.org/10.5281/zenodo.15120440" httpUri="https://zenodo.org/record/15120440/files/figure.png" pageId="15" pageNumber="91">Figs 1B</figureCitation>
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,
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<figureCitation id="131E2A0EFFC1EC2BFCC3F9CCFCC7F9ED" box="[797,871,1623,1649]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." pageId="15" pageNumber="91">4G–H</figureCitation>
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<figureCitation id="131E2A0EFFC1EC2BFCC3F9CCFCC7F9ED" box="[797,871,1623,1649]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." figureDoi="http://doi.org/10.5281/zenodo.15120446" httpUri="https://zenodo.org/record/15120446/files/figure.png" pageId="15" pageNumber="91">4G–H</figureCitation>
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,
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<figureCitation id="131E2A0EFFC1EC2BFCADF9CDFC22F9ED" box="[883,898,1622,1649]" captionStart="Fig" captionStartId="14.[185,228,1998,2024]" captionTargetBox="[297,1291,509,1959]" captionTargetId="figure-67@14.[297,1291,509,1960]" captionTargetPageId="14" captionText="Fig. 5. Distribution map of Apoderiger Wasmann, 1897." pageId="15" pageNumber="91">5</figureCitation>
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<figureCitation id="131E2A0EFFC1EC2BFCADF9CDFC22F9ED" box="[883,898,1622,1649]" captionStart="Fig" captionStartId="14.[185,228,1998,2024]" captionTargetBox="[297,1291,509,1959]" captionTargetId="figure-67@14.[297,1291,509,1960]" captionTargetPageId="14" captionText="Fig. 5. Distribution map of Apoderiger Wasmann, 1897." figureDoi="http://doi.org/10.5281/zenodo.15120450" httpUri="https://zenodo.org/record/15120450/files/figure.png" pageId="15" pageNumber="91">5</figureCitation>
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</paragraph>
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</subSubSection>
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<subSubSection id="C33F6500FFC1EC2BFF63F903FB2AF8D6" pageId="15" pageNumber="91" type="diagnosis">
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@ -240,7 +241,7 @@ lgt.” [white, printed];
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<paragraph id="8B9A368BFFDEEC34FF63FCD2FDBDFC1A" blockId="16.[189,1399,840,902]" pageId="16" pageNumber="92">
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<smallCapsWord id="8D7CA057FFDEEC34FF63FCD2FF5EFCFD" baselines="860,860" box="[189,254,841,867]" lowerCaseFontSize="8" mainFontSize="11" normCase="title" normString="Body" pageId="16" pageNumber="92">BODY</smallCapsWord>
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(
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<figureCitation id="131E2A0EFFDEEC34FECEFCD3FEF9FCFF" box="[272,345,840,867]" captionStart="Fig" captionStartId="5.[189,232,1892,1918]" captionTargetBox="[200,1387,265,1853]" captionTargetId="figure-13@5.[200,1388,265,1854]" captionTargetPageId="5" captionText="Fig. 2. Apoderiger sikorai sp. nov., paratype, ♂ (PCPH). A. Head in ventral view. B. Mouth part. C–D. Antenna.E. Apoderiger torticornis Jeannel, 1960, holotype, ♂ (MNHN), antenna. Abbrevations: bst = basistipes; cd = cardo; cl = clypeus; gp = gular plate; lb = labrum; md = mandible; mn = mentum; mxp = maxillary palpi; ps = peg-like sensilla; ptp = posterior tentorisl pits." pageId="16" pageNumber="92">Fig. 2</figureCitation>
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<figureCitation id="131E2A0EFFDEEC34FECEFCD3FEF9FCFF" box="[272,345,840,867]" captionStart="Fig" captionStartId="5.[189,232,1892,1918]" captionTargetBox="[200,1387,265,1853]" captionTargetId="figure-13@5.[200,1388,265,1854]" captionTargetPageId="5" captionText="Fig. 2. Apoderiger sikorai sp. nov., paratype, ♂ (PCPH). A. Head in ventral view. B. Mouth part. C–D. Antenna.E. Apoderiger torticornis Jeannel, 1960, holotype, ♂ (MNHN), antenna. Abbrevations: bst = basistipes; cd = cardo; cl = clypeus; gp = gular plate; lb = labrum; md = mandible; mn = mentum; mxp = maxillary palpi; ps = peg-like sensilla; ptp = posterior tentorisl pits." figureDoi="http://doi.org/10.5281/zenodo.15120442" httpUri="https://zenodo.org/record/15120442/files/figure.png" pageId="16" pageNumber="92">Fig. 2</figureCitation>
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). Yellowish-brown, less elongated, about 2.1–2.2 × as long as wide; body
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<quantity id="4CDD9B6EFFDEEC34FB15FCD3FAD7FCFF" box="[1227,1399,840,867]" metricMagnitude="-3" metricUnit="m" metricValue="1.6749999999999998" metricValueMax="1.7" metricValueMin="1.65" pageId="16" pageNumber="92" unit="mm" value="1.6749999999999998" valueMax="1.7" valueMin="1.65">1.65–1.70 mm</quantity>
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long and
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@ -280,7 +281,7 @@ long, terminal antennomere slightly curved in distal portion.
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<paragraph id="8B9A368BFFDEEC34FF63F9BCFD42F91B" blockId="16.[189,1399,1575,1671]" pageId="16" pageNumber="92">
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<smallCapsWord id="8D7CA057FFDEEC34FF63F9BCFE93F9DC" baselines="1594,1595" box="[189,307,1575,1601]" lowerCaseFontSize="8" mainFontSize="11" normCase="title" normString="Aedeagus" pageId="16" pageNumber="92">AEDEAGUS</smallCapsWord>
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(
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<figureCitation id="131E2A0EFFDEEC34FE9CF9BCFE63F9DD" box="[322,451,1575,1601]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." pageId="16" pageNumber="92">Fig. 4G–H</figureCitation>
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<figureCitation id="131E2A0EFFDEEC34FE9CF9BCFE63F9DD" box="[322,451,1575,1601]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." figureDoi="http://doi.org/10.5281/zenodo.15120446" httpUri="https://zenodo.org/record/15120446/files/figure.png" pageId="16" pageNumber="92">Fig. 4G–H</figureCitation>
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). Wlongate, about 2.95 × as long as wide, with slightly convergent distal lobe; basal bulb and distal lobe well-separated, ratio length of basal bulb / length of distal lobe 0.95; endophallus with large sclerite; dorsal diaphragm elliptical.
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</paragraph>
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<paragraph id="8B9A368BFFDEEC34FF63F934FE13F955" blockId="16.[189,435,1711,1737]" box="[189,435,1711,1737]" pageId="16" pageNumber="92">
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@ -1,40 +1,41 @@
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<paragraph id="8B9A368BFFC7EC2DFDA8FDA0FC1DFDC9" blockId="9.[359,1228,500,597]" box="[630,957,570,597]" pageId="9" pageNumber="85">
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<figureCitation id="131E2A0EFFC7EC2DFDA8FDA0FD59FDC9" box="[630,761,571,597]" captionStart="Fig" captionStartId="5.[189,232,1892,1918]" captionTargetBox="[200,1387,265,1853]" captionTargetId="figure-13@5.[200,1388,265,1854]" captionTargetPageId="5" captionText="Fig. 2. Apoderiger sikorai sp. nov., paratype, ♂ (PCPH). A. Head in ventral view. B. Mouth part. C–D. Antenna.E. Apoderiger torticornis Jeannel, 1960, holotype, ♂ (MNHN), antenna. Abbrevations: bst = basistipes; cd = cardo; cl = clypeus; gp = gular plate; lb = labrum; md = mandible; mn = mentum; mxp = maxillary palpi; ps = peg-like sensilla; ptp = posterior tentorisl pits." pageId="9" pageNumber="85">Figs 2A–C</figureCitation>
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<figureCitation id="131E2A0EFFC7EC2DFDA8FDA0FD59FDC9" box="[630,761,571,597]" captionStart="Fig" captionStartId="5.[189,232,1892,1918]" captionTargetBox="[200,1387,265,1853]" captionTargetId="figure-13@5.[200,1388,265,1854]" captionTargetPageId="5" captionText="Fig. 2. Apoderiger sikorai sp. nov., paratype, ♂ (PCPH). A. Head in ventral view. B. Mouth part. C–D. Antenna.E. Apoderiger torticornis Jeannel, 1960, holotype, ♂ (MNHN), antenna. Abbrevations: bst = basistipes; cd = cardo; cl = clypeus; gp = gular plate; lb = labrum; md = mandible; mn = mentum; mxp = maxillary palpi; ps = peg-like sensilla; ptp = posterior tentorisl pits." figureDoi="http://doi.org/10.5281/zenodo.15120442" httpUri="https://zenodo.org/record/15120442/files/figure.png" pageId="9" pageNumber="85">Figs 2A–C</figureCitation>
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,
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<figureCitation id="131E2A0EFFC7EC2DFCDBFDA0FCEEFDC9" box="[773,846,571,597]" captionStart="Fig" captionStartId="10.[189,232,1822,1848]" captionTargetBox="[189,1398,373,1784]" captionTargetId="figure-11@10.[189,1398,373,1784]" captionTargetPageId="10" captionText="Fig. 3. Apoderiger sikoraisp. nov., paratype,♂ (PCPH).A. Prosternum and metaventrite.B. Metaventrite and abdomen. C. Distal part of tibia and tarsus. Abbrevations: amtp = anterior metaventral process; ihy = inner hypomeral region; hyr = hypomeral ridges; hyg = hypomeral groove; lpcf = lateral procoxal fovea; msvp = mesoventral process; mtvp = posterior metaventral process; ohy = outer hypomeral region; psp = prosternal process; pst = prosternum; sbl = tarsal subapical tooth; tpat = tarsal preapical tooth; III–IX = visible tergites." pageId="9" pageNumber="85">3A–C</figureCitation>
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<figureCitation id="131E2A0EFFC7EC2DFCDBFDA0FCEEFDC9" box="[773,846,571,597]" captionStart="Fig" captionStartId="10.[189,232,1822,1848]" captionTargetBox="[189,1398,373,1784]" captionTargetId="figure-11@10.[189,1398,373,1784]" captionTargetPageId="10" captionText="Fig. 3. Apoderiger sikoraisp. nov., paratype,♂ (PCPH).A. Prosternum and metaventrite.B. Metaventrite and abdomen. C. Distal part of tibia and tarsus. Abbrevations: amtp = anterior metaventral process; ihy = inner hypomeral region; hyr = hypomeral ridges; hyg = hypomeral groove; lpcf = lateral procoxal fovea; msvp = mesoventral process; mtvp = posterior metaventral process; ohy = outer hypomeral region; psp = prosternal process; pst = prosternum; sbl = tarsal subapical tooth; tpat = tarsal preapical tooth; III–IX = visible tergites." figureDoi="http://doi.org/10.5281/zenodo.15120444" httpUri="https://zenodo.org/record/15120444/files/figure.png" pageId="9" pageNumber="85">3A–C</figureCitation>
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,
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<figureCitation id="131E2A0EFFC7EC2DFC84FDA0FC03FDC9" box="[858,931,571,597]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." pageId="9" pageNumber="85">4C–D</figureCitation>
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<figureCitation id="131E2A0EFFC7EC2DFC84FDA0FC03FDC9" box="[858,931,571,597]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." figureDoi="http://doi.org/10.5281/zenodo.15120446" httpUri="https://zenodo.org/record/15120446/files/figure.png" pageId="9" pageNumber="85">4C–D</figureCitation>
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,
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<figureCitation id="131E2A0EFFC7EC2DFC70FDA1FC1DFDC9" box="[942,957,570,597]" captionStart="Fig" captionStartId="14.[185,228,1998,2024]" captionTargetBox="[297,1291,509,1959]" captionTargetId="figure-67@14.[297,1291,509,1960]" captionTargetPageId="14" captionText="Fig. 5. Distribution map of Apoderiger Wasmann, 1897." pageId="9" pageNumber="85">5</figureCitation>
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<figureCitation id="131E2A0EFFC7EC2DFC70FDA1FC1DFDC9" box="[942,957,570,597]" captionStart="Fig" captionStartId="14.[185,228,1998,2024]" captionTargetBox="[297,1291,509,1959]" captionTargetId="figure-67@14.[297,1291,509,1960]" captionTargetPageId="14" captionText="Fig. 5. Distribution map of Apoderiger Wasmann, 1897." figureDoi="http://doi.org/10.5281/zenodo.15120450" httpUri="https://zenodo.org/record/15120450/files/figure.png" pageId="9" pageNumber="85">5</figureCitation>
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</paragraph>
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<subSubSection id="C33F6500FFC7EC2DFF63FDE7FC65FCB2" pageId="9" pageNumber="85" type="diagnosis">
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|
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@ -203,7 +204,7 @@ long, terminal antennomere slightly curved in distal portion.
|
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<smallCapsWord id="8D7CA057FFC7EC2DFF63F8F0FE8CF818" baselines="1918,1919" box="[189,300,1899,1925]" lowerCaseFontSize="8" mainFontSize="11" normCase="title" normString="Abdomen" pageId="9" pageNumber="85">ABDOMEN</smallCapsWord>
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. 1.60–1.80× as long as elytra; composite tergite in posterior portion with pair of small, bump-like, widely separated projections.
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</paragraph>
|
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<emphasis id="B951EA99FFC4EC2EFF63F885FEA8F8A4" bold="true" box="[189,264,1822,1848]" pageId="10" pageNumber="86">Fig. 3.</emphasis>
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<taxonomicName id="4C254D08FFC4EC2EFED3F885FE4BF8A4" authorityName="Hlaváč" authorityYear="2025" box="[269,491,1822,1848]" class="Insecta" family="Staphylinidae" genus="Apoderiger" kingdom="Animalia" order="Coleoptera" pageId="10" pageNumber="86" phylum="Arthropoda" rank="species" species="sikorai" status="sp. nov.">
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|
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@ -250,7 +251,7 @@ long, terminal antennomere slightly curved in distal portion.
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<smallCapsWord id="8D7CA057FFC5EC2FFF63FED0FE93FEFF" baselines="350,350" box="[189,307,331,357]" lowerCaseFontSize="8" mainFontSize="11" normCase="title" normString="Aedeagus" pageId="11" pageNumber="87">AEDEAGUS</smallCapsWord>
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(
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<figureCitation id="131E2A0EFFC5EC2FFE98FED1FE69FEF9" box="[326,457,330,357]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." pageId="11" pageNumber="87">Fig. 4C–D</figureCitation>
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<figureCitation id="131E2A0EFFC5EC2FFE98FED1FE69FEF9" box="[326,457,330,357]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." figureDoi="http://doi.org/10.5281/zenodo.15120446" httpUri="https://zenodo.org/record/15120446/files/figure.png" pageId="11" pageNumber="87">Fig. 4C–D</figureCitation>
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||||
). Elongate, 2.50 × as long as wide, distal lobe with round apex; basal bulb and distal lobe well-separated, ratio length of basal bulb / length of distal lobe 1.20; endophallus with sclerite having two differently shaped arms; dorsal diaphragm semicircular.
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</paragraph>
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<paragraph id="8B9A368BFFC5EC2FFF63FE49FE13FE70" blockId="11.[189,435,466,492]" box="[189,435,466,492]" pageId="11" pageNumber="87">
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@ -1,42 +1,43 @@
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<paragraph id="8B9A368BFFC9EC23FD44FA91FC3AFAB9" blockId="7.[574,1014,1254,1317]" box="[666,922,1290,1317]" pageId="7" pageNumber="83">
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<figureCitation id="131E2A0EFFC9EC23FD44FA91FD5AFAB8" box="[666,762,1290,1316]" captionStart="Fig" captionStartId="4.[191,234,1961,1987]" captionTargetBox="[291,1382,1113,1903]" captionTargetId="figure-263@4.[189,1398,1090,1923]" captionTargetPageId="4" captionText="Fig. 1.Dorsal habitus of male.A. Apoderiger torticornisJeannel, 1960,holotype (MNHN).B. Apoderiger banari sp. nov., holotype (PCPH)." pageId="7" pageNumber="83">Figs 1A</figureCitation>
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<figureCitation id="131E2A0EFFC9EC23FD44FA91FD5AFAB8" box="[666,762,1290,1316]" captionStart="Fig" captionStartId="4.[191,234,1961,1987]" captionTargetBox="[291,1382,1113,1903]" captionTargetId="figure-263@4.[189,1398,1090,1923]" captionTargetPageId="4" captionText="Fig. 1.Dorsal habitus of male.A. Apoderiger torticornisJeannel, 1960,holotype (MNHN).B. Apoderiger banari sp. nov., holotype (PCPH)." figureDoi="http://doi.org/10.5281/zenodo.15120440" httpUri="https://zenodo.org/record/15120440/files/figure.png" pageId="7" pageNumber="83">Figs 1A</figureCitation>
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,
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<figureCitation id="131E2A0EFFC9EC23FCD9FA91FC8AFAB8" box="[775,810,1290,1316]" captionStart="Fig" captionStartId="5.[189,232,1892,1918]" captionTargetBox="[200,1387,265,1853]" captionTargetId="figure-13@5.[200,1388,265,1854]" captionTargetPageId="5" captionText="Fig. 2. Apoderiger sikorai sp. nov., paratype, ♂ (PCPH). A. Head in ventral view. B. Mouth part. C–D. Antenna.E. Apoderiger torticornis Jeannel, 1960, holotype, ♂ (MNHN), antenna. Abbrevations: bst = basistipes; cd = cardo; cl = clypeus; gp = gular plate; lb = labrum; md = mandible; mn = mentum; mxp = maxillary palpi; ps = peg-like sensilla; ptp = posterior tentorisl pits." pageId="7" pageNumber="83">2E</figureCitation>
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<figureCitation id="131E2A0EFFC9EC23FCD9FA91FC8AFAB8" box="[775,810,1290,1316]" captionStart="Fig" captionStartId="5.[189,232,1892,1918]" captionTargetBox="[200,1387,265,1853]" captionTargetId="figure-13@5.[200,1388,265,1854]" captionTargetPageId="5" captionText="Fig. 2. Apoderiger sikorai sp. nov., paratype, ♂ (PCPH). A. Head in ventral view. B. Mouth part. C–D. Antenna.E. Apoderiger torticornis Jeannel, 1960, holotype, ♂ (MNHN), antenna. Abbrevations: bst = basistipes; cd = cardo; cl = clypeus; gp = gular plate; lb = labrum; md = mandible; mn = mentum; mxp = maxillary palpi; ps = peg-like sensilla; ptp = posterior tentorisl pits." figureDoi="http://doi.org/10.5281/zenodo.15120442" httpUri="https://zenodo.org/record/15120442/files/figure.png" pageId="7" pageNumber="83">2E</figureCitation>
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,
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<figureCitation id="131E2A0EFFC9EC23FCE8FA91FCDFFAB8" box="[822,895,1290,1316]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." pageId="7" pageNumber="83">4A–B</figureCitation>
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<figureCitation id="131E2A0EFFC9EC23FCE8FA91FCDFFAB8" box="[822,895,1290,1316]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." figureDoi="http://doi.org/10.5281/zenodo.15120446" httpUri="https://zenodo.org/record/15120446/files/figure.png" pageId="7" pageNumber="83">4A–B</figureCitation>
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,
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<figureCitation id="131E2A0EFFC9EC23FC55FA91FC3AFAB9" box="[907,922,1290,1317]" captionStart="Fig" captionStartId="14.[185,228,1998,2024]" captionTargetBox="[297,1291,509,1959]" captionTargetId="figure-67@14.[297,1291,509,1960]" captionTargetPageId="14" captionText="Fig. 5. Distribution map of Apoderiger Wasmann, 1897." pageId="7" pageNumber="83">5</figureCitation>
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<figureCitation id="131E2A0EFFC9EC23FC55FA91FC3AFAB9" box="[907,922,1290,1317]" captionStart="Fig" captionStartId="14.[185,228,1998,2024]" captionTargetBox="[297,1291,509,1959]" captionTargetId="figure-67@14.[297,1291,509,1960]" captionTargetPageId="14" captionText="Fig. 5. Distribution map of Apoderiger Wasmann, 1897." figureDoi="http://doi.org/10.5281/zenodo.15120450" httpUri="https://zenodo.org/record/15120450/files/figure.png" pageId="7" pageNumber="83">5</figureCitation>
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</paragraph>
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|
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@ -285,7 +286,7 @@ long, terminal antennomere slightly curved in distal portion.
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<paragraph id="8B9A368BFFC6EC2CFF63FAEAFE8CFA4D" blockId="8.[189,1398,1393,1489]" pageId="8" pageNumber="84">
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(
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<figureCitation id="131E2A0EFFC6EC2CFE96FAEAFE6CFA17" box="[328,460,1393,1419]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." pageId="8" pageNumber="84">Fig. 4A–B</figureCitation>
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<figureCitation id="131E2A0EFFC6EC2CFE96FAEAFE6CFA17" box="[328,460,1393,1419]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." figureDoi="http://doi.org/10.5281/zenodo.15120446" httpUri="https://zenodo.org/record/15120446/files/figure.png" pageId="8" pageNumber="84">Fig. 4A–B</figureCitation>
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||||
). Elongate, 2.67 × as long as wide; basal bulb and distal lobe well-separated, ratio length of basal bulb/ length of distal lobe 2.40; endophallus lacking sclerites; dorsal diaphragm elliptical.
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</paragraph>
|
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@ -1,42 +1,43 @@
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<paragraph id="8B9A368BFFDFEC35FD0BFE4EFCFFFE6C" blockId="17.[351,1236,399,496]" box="[725,863,469,496]" pageId="17" pageNumber="93">
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<figureCitation id="131E2A0EFFDFEC35FD0BFE4EFCE4FE6C" box="[725,836,469,496]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." pageId="17" pageNumber="93">Figs 4I–J</figureCitation>
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<figureCitation id="131E2A0EFFDFEC35FD0BFE4EFCE4FE6C" box="[725,836,469,496]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." figureDoi="http://doi.org/10.5281/zenodo.15120446" httpUri="https://zenodo.org/record/15120446/files/figure.png" pageId="17" pageNumber="93">Figs 4I–J</figureCitation>
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,
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<figureCitation id="131E2A0EFFDFEC35FC8EFE4EFCFFFE6C" box="[848,863,469,496]" captionStart="Fig" captionStartId="14.[185,228,1998,2024]" captionTargetBox="[297,1291,509,1959]" captionTargetId="figure-67@14.[297,1291,509,1960]" captionTargetPageId="14" captionText="Fig. 5. Distribution map of Apoderiger Wasmann, 1897." pageId="17" pageNumber="93">5</figureCitation>
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<figureCitation id="131E2A0EFFDFEC35FC8EFE4EFCFFFE6C" box="[848,863,469,496]" captionStart="Fig" captionStartId="14.[185,228,1998,2024]" captionTargetBox="[297,1291,509,1959]" captionTargetId="figure-67@14.[297,1291,509,1960]" captionTargetPageId="14" captionText="Fig. 5. Distribution map of Apoderiger Wasmann, 1897." figureDoi="http://doi.org/10.5281/zenodo.15120450" httpUri="https://zenodo.org/record/15120450/files/figure.png" pageId="17" pageNumber="93">5</figureCitation>
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</paragraph>
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<subSubSection id="C33F6500FFDFEC35FF63FD8CFBD6FD55" pageId="17" pageNumber="93" type="diagnosis">
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|
|
@ -159,7 +160,7 @@ long, terminal antennomere slightly curved in distal portion.
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<paragraph id="8B9A368BFFDFEC35FF63F8F0FD60F857" blockId="17.[187,1399,1898,1995]" pageId="17" pageNumber="93">
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(
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<figureCitation id="131E2A0EFFDFEC35FE9BF8F1FE13F819" box="[325,435,1898,1925]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." pageId="17" pageNumber="93">Fig. 4I–J</figureCitation>
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<figureCitation id="131E2A0EFFDFEC35FE9BF8F1FE13F819" box="[325,435,1898,1925]" captionStart="Fig" captionStartId="12.[189,232,1892,1918]" captionTargetBox="[210,1368,284,1850]" captionTargetId="figure-12@12.[199,1369,269,1854]" captionTargetPageId="12" captionText="Fig. 4. Dorsal and lateral view of aedeagus. A–B. Apoderiger torticornis Jeannel, 1960, lectotype (MNHN). C–D. Apoderiger sikorai sp. nov., paratype (NMW). E–F. Apoderiger spinosus (Dajoz, 1982), holotype (MNHN).G–H. Apoderiger banari sp. nov., holotype (PCPH).I–J. Apoderiger grandis sp. nov., holotype (MHNG)." figureDoi="http://doi.org/10.5281/zenodo.15120446" httpUri="https://zenodo.org/record/15120446/files/figure.png" pageId="17" pageNumber="93">Fig. 4I–J</figureCitation>
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). Elongate, 2.75 × as long as wide, distal lobe rhomboidal, with three small lobes; basal bulb and distal lobe well-separated, ratio length of basal bulb / length of distal lobe 3.1; endophallus lacking sclerite; dorsal diaphragm elliptical.
|
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354
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<emphasis id="B96F164F7A0287279483F9835284F9E5" bold="true" box="[151,422,1555,1581]" pageId="4" pageNumber="313">Phylogenetic analyses</emphasis>
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The total concatenated dataset consisted of 4,758 base pairs (best fit model = GTR + F + R4). Best fit models for each partition are as follows: ND4 (755bp, TIM2+F+R4), 16S (480bp, TIM2+F+I+G4), COI (715bp, TPM2u+F+R3), RAG-1 (810bp, TPM3u+F+I+G4), β-Globin-2 (853bp, TVM+F+G4), C-mos (400bp, TN+F+G4), ALD (235bp, SYM+R2), MHC-2 (510bp, TN+F+G4), mitochondrial (1950 bp, GTR+F+R4), and nuclear (2,808bp, TVMe+R3). We find no well supported conflict between the partitioned and concatenated results (see Supplementary
|
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<figureCitation id="1320D6D87A028727913AF97B56A9F8CD" box="[1326,1419,1771,1797]" captionStart="FIGURE 1" captionStartId="2.[152,255,1823,1847]" captionTargetBox="[165,1423,534,1790]" captionTargetId="figure-119@2.[151,1436,523,1797]" captionTargetPageId="2" captionText="FIGURE 1. Phylogenetic relationships between three genera of rainbow skinks based on Bayesian analysis of the concatenated dataset. Posterior probabilities are listed below branches. Liburnascincus and Lygisaurus are represented by Li. and L. respectively. Clades within the Carlia fusca complex have been collapsed and are shown in detail in figure 2. A sampling map is provided for Lygisaurus with the 5 major geological terranes of New Guinea labeled according to Davies (2012) and drawn based on Hill et al. (2023). Clades and colors within the Carlia fusca group reflect relationships shown in figure 2." figureDoi="http://doi.org/10.5281/zenodo.14797182" httpUri="https://zenodo.org/record/14797182/files/figure.png" pageId="4" pageNumber="313">Figure 1</figureCitation>
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), therefore results from the concatenated analysis are presented here.
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</paragraph>
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<paragraph id="8BA4CA5D7A02872694D3F8A35790FF1D" blockId="4.[151,1437,1627,2014]" lastBlockId="5.[151,1437,151,429]" lastPageId="5" lastPageNumber="314" pageId="4" pageNumber="313">
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The concatenated Bayesian analysis (
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<figureCitation id="1320D6D87A0287279660F8A35195F885" box="[628,695,1843,1869]" captionStart="FIGURE 1" captionStartId="2.[152,255,1823,1847]" captionTargetBox="[165,1423,534,1790]" captionTargetId="figure-119@2.[151,1436,523,1797]" captionTargetPageId="2" captionText="FIGURE 1. Phylogenetic relationships between three genera of rainbow skinks based on Bayesian analysis of the concatenated dataset. Posterior probabilities are listed below branches. Liburnascincus and Lygisaurus are represented by Li. and L. respectively. Clades within the Carlia fusca complex have been collapsed and are shown in detail in figure 2. A sampling map is provided for Lygisaurus with the 5 major geological terranes of New Guinea labeled according to Davies (2012) and drawn based on Hill et al. (2023). Clades and colors within the Carlia fusca group reflect relationships shown in figure 2." figureDoi="http://doi.org/10.5281/zenodo.14797182" httpUri="https://zenodo.org/record/14797182/files/figure.png" pageId="4" pageNumber="313">Fig. 1</figureCitation>
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) strongly supports (1.0pp) the monophyly of all three genera of rainbow skinks, with
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<taxonomicName id="4C1BB1DE7A0287279599F8C75118F8B9" authorityName="Wells and Wellington" authorityYear="1983" box="[397,570,1879,1905]" class="Squamata" family="Scincidae" genus="Liburnascincus" kingdom="Animalia" pageId="4" pageNumber="313" phylum="Chordata" rank="genus">
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<emphasis id="B96F164F7A0287279599F8C75118F8B9" box="[397,570,1879,1905]" italics="true" pageId="4" pageNumber="313">Liburnascincus</emphasis>
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</taxonomicName>
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sister to
|
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<taxonomicName id="4C1BB1DE7A02872796B0F8C85002F8B9" authorityName="de Vis" authorityYear="1884" box="[676,800,1880,1905]" class="Squamata" family="Scincidae" genus="Lygisaurus" kingdom="Animalia" pageId="4" pageNumber="313" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A02872796B0F8C85002F8B9" box="[676,800,1880,1905]" italics="true" pageId="4" pageNumber="313">Lygisaurus</emphasis>
|
||||
</taxonomicName>
|
||||
+
|
||||
<taxonomicName id="4C1BB1DE7A0287279755F8C750A8F8B9" authorityName="Gray" authorityYear="1845" box="[833,906,1879,1905]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="4" pageNumber="313" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A0287279755F8C750A8F8B9" box="[833,906,1879,1905]" italics="true" pageId="4" pageNumber="313">Carlia</emphasis>
|
||||
</taxonomicName>
|
||||
(.97pp), as found in
|
||||
<bibRefCitation id="EF8AB7AC7A0287279068F8C756BEF8B9" author="Dolman, G. & Hugall, A. F." box="[1148,1436,1879,1905]" pageId="4" pageNumber="313" pagination="782 - 794" refId="ref10454" refString="Dolman, G. & Hugall, A. F. (2008) Combined mitochondrial and nuclear data enhance resolution of a rapid radiation of Australian rainbow skinks (Scincidae: Carlia). Molecular Phylogenetics and Evolution, 49 (3), 782-794. https://doi.org/10.1016/j.ympev.2008.09.021" type="journal article" year="2008">Dolman & Hugall (2008)</bibRefCitation>
|
||||
but in contrast to
|
||||
<bibRefCitation id="EF8AB7AC7A028727954BF8EC5119F85D" author="Bragg, J. G. & Potter, S. & Afonso Silva, A. C. & Hoskin, C. J. & Bai, B. Y. & Moritz, C." box="[351,571,1915,1942]" pageId="4" pageNumber="313" pagination="1 - 12" refId="ref8851" refString="Bragg, J. G., Potter, S., Afonso Silva, A. C., Hoskin, C. J., Bai, B. Y. & Moritz, C. (2018) Phylogenomics of a rapid radiation: the Australian rainbow skinks. BMC evolutionary biology, 18 (15), 1-12. https://doi.org/10.1186/s12862-018-1130-4" type="journal article" year="2018">
|
||||
Bragg
|
||||
<emphasis id="B96F164F7A02872795B8F8EC52FCF85D" box="[428,478,1915,1941]" italics="true" pageId="4" pageNumber="313">et al</emphasis>
|
||||
. (2018)
|
||||
</bibRefCitation>
|
||||
. Within
|
||||
<taxonomicName id="4C1BB1DE7A028727968FF8EC5035F85D" authorityName="de Vis" authorityYear="1884" box="[667,791,1916,1941]" class="Squamata" family="Scincidae" genus="Lygisaurus" kingdom="Animalia" pageId="4" pageNumber="313" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A028727968FF8EC5035F85D" box="[667,791,1916,1941]" italics="true" pageId="4" pageNumber="313">Lygisaurus</emphasis>
|
||||
</taxonomicName>
|
||||
our results support two distinct clades, one composed of Australian species, and the other with the Australian
|
||||
<taxonomicName id="4C1BB1DE7A02872796E6F83050AEF871" authorityName="Gunther" authorityYear="1877" box="[754,908,1951,1977]" class="Squamata" family="Scincidae" genus="Lygisaurus" kingdom="Animalia" pageId="4" pageNumber="313" phylum="Chordata" rank="species" species="macfarlani">
|
||||
<emphasis id="B96F164F7A02872796E6F83050AEF871" box="[754,908,1951,1977]" italics="true" pageId="4" pageNumber="313">L. macfarlani</emphasis>
|
||||
</taxonomicName>
|
||||
, (referred to as
|
||||
<taxonomicName id="4C1BB1DE7A0287279057F83056BAF871" authority="Meyer, 1874" authorityName="Meyer" authorityYear="1874" box="[1091,1432,1951,1978]" class="Squamata" family="Scincidae" genus="Lygisaurus" kingdom="Animalia" pageId="4" pageNumber="313" phylum="Chordata" rank="species" species="novaeguineae">
|
||||
<emphasis id="B96F164F7A0287279057F83057DCF871" box="[1091,1278,1952,1977]" italics="true" pageId="4" pageNumber="313">L. novaeguineae</emphasis>
|
||||
<bibRefCitation id="EF8AB7AC7A0287279112F83056BAF871" author="Meyer, A." box="[1286,1432,1951,1978]" pageId="4" pageNumber="313" pagination="128 - 140" refId="ref13117" refString="Meyer, A. (1874) Platemys novaeguineae sp. nov. Dr. WH Peters legte vor: Eine mittheilung von Hrn. Adolf Bernhard Meyer uber die von ihm auf Neu-Guinea under den Inseln Jobi, Mysore und Mafoor im Jahre 1873 gesammelten Amphibien. Monatsberichte der Koniglich Preussischen Akademie der Wissenschaften zu Berlin, 39, 128-140." type="journal article" year="1874">Meyer, 1874</bibRefCitation>
|
||||
</taxonomicName>
|
||||
, in
|
||||
<bibRefCitation id="EF8AB7AC7A02872794A0F853529DF815" author="Dolman, G. & Hugall, A. F." box="[180,447,1987,2013]" pageId="4" pageNumber="313" pagination="782 - 794" refId="ref10454" refString="Dolman, G. & Hugall, A. F. (2008) Combined mitochondrial and nuclear data enhance resolution of a rapid radiation of Australian rainbow skinks (Scincidae: Carlia). Molecular Phylogenetics and Evolution, 49 (3), 782-794. https://doi.org/10.1016/j.ympev.2008.09.021" type="journal article" year="2008">Dolman & Hugall 2008</bibRefCitation>
|
||||
; changed here based on locality) sister to all New Guinean samples. The placement of
|
||||
<taxonomicName id="4C1BB1DE7A0287269192F8545171FF79" authority="Ingram & Covacevich, 1988" authorityName="Ingram & Covacevich" authorityYear="1988" class="Squamata" family="Scincidae" genus="Lygisaurus" kingdom="Animalia" lastPageId="5" lastPageNumber="314" pageId="4" pageNumber="313" phylum="Chordata" rank="species" species="sesbrauna">
|
||||
<emphasis id="B96F164F7A0287269192F8545228FF79" italics="true" lastPageId="5" lastPageNumber="314" pageId="4" pageNumber="313">L. sesbrauna</emphasis>
|
||||
<bibRefCitation id="EF8AB7AC7A0387269505FF075171FF79" author="Ingram, G. & Covacevich, J." box="[273,595,151,177]" pageId="5" pageNumber="314" pagination="335 - 354" refId="ref11832" refString="Ingram, G. & Covacevich, J. (1988) Revision of the genus Lygisaurus de Vis (Scincidae: Reptilia) in Australia. Memoirs of the Queensland Museum, 25 (2), 335-354." type="journal article" year="1988">Ingram & Covacevich, 1988</bibRefCitation>
|
||||
</taxonomicName>
|
||||
, is problematic and unresolved in the concatenated tree.
|
||||
<emphasis id="B96F164F7A03872690D9FF0756BEFF78" box="[1229,1436,151,176]" italics="true" pageId="5" pageNumber="314">
|
||||
<taxonomicName id="4C1BB1DE7A03872690D9FF0756BAFF78" authorityName="Boulenger" authorityYear="1897" box="[1229,1432,151,176]" class="Squamata" family="Scincidae" genus="Lygisaurus" kingdom="Animalia" pageId="5" pageNumber="314" phylum="Chordata" rank="species" species="curtus">Lygisaurus curtus</taxonomicName>
|
||||
,
|
||||
</emphasis>
|
||||
is monophyletic (.94pp) with long branch lengths and deep genetic distances across localities.
|
||||
</paragraph>
|
||||
<paragraph id="8BA4CA5D7A03872694D3FF4F5397FE65" blockId="5.[151,1437,151,429]" pageId="5" pageNumber="314">
|
||||
Within
|
||||
<taxonomicName id="4C1BB1DE7A0387269508FF4F5247FF31" authorityName="Gray" authorityYear="1845" box="[284,357,223,249]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="5" pageNumber="314" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A0387269508FF4F5247FF31" box="[284,357,223,249]" italics="true" pageId="5" pageNumber="314">Carlia</emphasis>
|
||||
</taxonomicName>
|
||||
, the
|
||||
<taxonomicName id="4C1BB1DE7A03872695B4FF4F52F9FF31" authorityName="Dumeril and Bibron" authorityYear="1839" box="[416,475,223,249]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="5" pageNumber="314" phylum="Chordata" rank="species" species="fusca">
|
||||
<emphasis id="B96F164F7A03872695B4FF4F52F9FF31" box="[416,475,223,249]" italics="true" pageId="5" pageNumber="314">fusca</emphasis>
|
||||
</taxonomicName>
|
||||
group is sister to the
|
||||
<taxonomicName id="4C1BB1DE7A03872696C2FF4F5069FF31" authorityName="Macleay" authorityYear="1877" box="[726,843,223,249]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="5" pageNumber="314" phylum="Chordata" rank="species" species="bicarinata">
|
||||
<emphasis id="B96F164F7A03872696C2FF4F5069FF31" box="[726,843,223,249]" italics="true" pageId="5" pageNumber="314">bicarinata</emphasis>
|
||||
</taxonomicName>
|
||||
group, with all remaining Australian taxa sister this clade (1.0pp). Support for the monophyly of the
|
||||
<taxonomicName id="4C1BB1DE7A03872696D7FE935078FED5" authorityName="Macleay" authorityYear="1877" box="[707,858,259,285]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="5" pageNumber="314" phylum="Chordata" rank="species" species="bicarinata">
|
||||
<emphasis id="B96F164F7A03872696D7FE935078FED5" box="[707,858,259,285]" italics="true" pageId="5" pageNumber="314">C. bicarinata</emphasis>
|
||||
</taxonomicName>
|
||||
clade is low (.77pp) and results in a basal tritomy, due to the placement of
|
||||
<taxonomicName id="4C1BB1DE7A03872695BDFEB75118FE89" authorityName="Peters" authorityYear="1867" box="[425,570,295,321]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="5" pageNumber="314" phylum="Chordata" rank="species" species="schmeltzii">
|
||||
<emphasis id="B96F164F7A03872695BDFEB75118FE89" box="[425,570,295,321]" italics="true" pageId="5" pageNumber="314">C. schmeltzii</emphasis>
|
||||
</taxonomicName>
|
||||
. Our results add to the support for the monophyly of the
|
||||
<taxonomicName id="4C1BB1DE7A03872690D7FEB7563DFE89" authorityName="Dumeril and Bibron" authorityYear="1839" box="[1219,1311,295,321]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="5" pageNumber="314" phylum="Chordata" rank="species" species="fusca">
|
||||
<emphasis id="B96F164F7A03872690D7FEB7563DFE89" box="[1219,1311,295,321]" italics="true" pageId="5" pageNumber="314">C. fusca</emphasis>
|
||||
</taxonomicName>
|
||||
group (1.0 pp) (
|
||||
<bibRefCitation id="EF8AB7AC7A03872694DFFEDB52F9FEAD" author="Dolman, G. & Hugall, A. F." box="[203,475,331,357]" pageId="5" pageNumber="314" pagination="782 - 794" refId="ref10454" refString="Dolman, G. & Hugall, A. F. (2008) Combined mitochondrial and nuclear data enhance resolution of a rapid radiation of Australian rainbow skinks (Scincidae: Carlia). Molecular Phylogenetics and Evolution, 49 (3), 782-794. https://doi.org/10.1016/j.ympev.2008.09.021" type="journal article" year="2008">Dolman & Hugall 2008</bibRefCitation>
|
||||
;
|
||||
<bibRefCitation id="EF8AB7AC7A03872695F3FEDB51FCFEAD" author="Donnellan, S. & Couper, P. & Saint, K. & Wheaton, L." box="[487,734,331,357]" pageId="5" pageNumber="314" pagination="1 - 31" refId="ref10572" refString="Donnellan, S., Couper, P., Saint, K. & Wheaton, L. (2009) Systematics of the Carlia fusca complex (Reptilia: Scincidae) from northern Australia. Zootaxa, 2227 (1), 1-31. https://doi.org/10.11646/zootaxa.2227.1.1" type="journal article" year="2009">
|
||||
Donnellan
|
||||
<emphasis id="B96F164F7A0387269677FEDB51B7FEAD" box="[611,661,331,357]" italics="true" pageId="5" pageNumber="314">et al</emphasis>
|
||||
. 2009
|
||||
</bibRefCitation>
|
||||
;
|
||||
<bibRefCitation id="EF8AB7AC7A03872696FFFEDB50C4FEAD" author="Stuart-Fox, D. M. & Hugall, A. F. & Moritz, C." box="[747,998,331,357]" pageId="5" pageNumber="314" pagination="39 - 51" refId="ref15358" refString="Stuart-Fox, D. M., Hugall, A. F. & Moritz, C. (2002) A molecular phylogeny of rainbow skinks (Scincidae: Carlia): taxonomic and biogeographic implications. Australian Journal of Zoology, 50 (1), 39-51. https://doi.org/10.1071/ZO01051" type="journal article" year="2002">
|
||||
Stuart-Fox
|
||||
<emphasis id="B96F164F7A038726977EFEDB50BEFEAD" box="[874,924,331,357]" italics="true" pageId="5" pageNumber="314">et al</emphasis>
|
||||
. 2002
|
||||
</bibRefCitation>
|
||||
;
|
||||
<bibRefCitation id="EF8AB7AC7A03872697E5FEDB5742FEAD" author="Zug, G. R." box="[1009,1120,331,357]" pageId="5" pageNumber="314" pagination="1 - 84" refId="ref16066" refString="Zug, G. R. (2004) Systematics of the Carlia " fusca " lizards (Squamata: Scincidae) of New Guinea and nearby islands. Bishop Museum Bulletin in Zoology, 5, 1-84" type="journal article" year="2004">Zug 2004</bibRefCitation>
|
||||
) and divide it into four well supported clades, with the exception of
|
||||
<taxonomicName id="4C1BB1DE7A0387269644FEFF50E2FE41" authority="Zug and Allison, 2006" authorityName="Zug and Allison" authorityYear="2006" box="[592,960,367,393]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="5" pageNumber="314" phylum="Chordata" rank="species" species="caesius">
|
||||
<emphasis id="B96F164F7A0387269644FEFF51E3FE40" box="[592,705,367,393]" italics="true" pageId="5" pageNumber="314">C. caesius</emphasis>
|
||||
<bibRefCitation id="EF8AB7AC7A03872696DCFEFF50E2FE41" author="Zug, G. R. & Allison, A." box="[712,960,367,393]" pageId="5" pageNumber="314" pagination="27 - 44" refId="ref16154" refString="Zug, G. R. & Allison, A. (2006) New Carlia fusca complex lizards (Reptilia: Squamata: Scincidae) from New Guinea, Papua- Indonesia. Zootaxa, 1237 (1), 27-44 https://doi.org/10.11646/zootaxa.1237.1.3" type="journal article" year="2006">Zug and Allison, 2006</bibRefCitation>
|
||||
</taxonomicName>
|
||||
where placement is poorly supported (
|
||||
<figureCitation id="1320D6D87A038726917BFEFF538AFE65" captionStart="FIGURE 2" captionStartId="5.[152,255,1656,1680]" captionTargetBox="[160,1428,461,1625]" captionTargetId="figure-151@5.[151,1436,453,1633]" captionTargetPageId="5" captionText="FIGURE 2. Pruned subtree based on Bayesian analysis of the con catenated dataset showing expanded relationships within the Carlia fusca and C. bicarinata groups. Posterior probabilities are displayed below branches. Clades are color coded according to their primary geologic terrane, and taxon names reflect the current species description and sampling locality. Taxa in bold represent sequences generated in this study, while those in plain text were taken from GenBank. The map shows sampling localities color coded by clade." figureDoi="http://doi.org/10.5281/zenodo.14797184" httpUri="https://zenodo.org/record/14797184/files/figure.png" pageId="5" pageNumber="314">Fig. 2</figureCitation>
|
||||
).
|
||||
</paragraph>
|
||||
<caption id="DF649AD57A038726948CF9E852F1F8E9" ID-DOI="http://doi.org/10.5281/zenodo.14797184" ID-Zenodo-Dep="14797184" httpUri="https://zenodo.org/record/14797184/files/figure.png" pageId="5" pageNumber="314" startId="5.[152,255,1656,1680]" targetBox="[160,1428,461,1625]" targetPageId="5" targetType="figure">
|
||||
<paragraph id="8BA4CA5D7A038726948CF9E852F1F8E9" blockId="5.[151,1436,1656,1825]" pageId="5" pageNumber="314">
|
||||
<emphasis id="B96F164F7A038726948CF9E8523AF959" bold="true" box="[152,280,1656,1681]" pageId="5" pageNumber="314">FIGURE 2.</emphasis>
|
||||
Pruned subtree based on Bayesian analysis of the con catenated dataset showing expanded relationships within the
|
||||
<taxonomicName id="4C1BB1DE7A0387269483F90D5237F97D" authorityName="Dumeril and Bibron" authorityYear="1839" box="[151,277,1693,1717]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="5" pageNumber="314" phylum="Chordata" rank="species" species="fusca">
|
||||
<emphasis id="B96F164F7A0387269483F90D5237F97D" box="[151,277,1693,1717]" italics="true" pageId="5" pageNumber="314">Carlia fusca</emphasis>
|
||||
</taxonomicName>
|
||||
and
|
||||
<taxonomicName id="4C1BB1DE7A038726955CF90D52F2F97D" authorityName="Macleay" authorityYear="1877" box="[328,464,1693,1717]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="5" pageNumber="314" phylum="Chordata" rank="species" species="bicarinata">
|
||||
<emphasis id="B96F164F7A038726955CF90D52F2F97D" box="[328,464,1693,1717]" italics="true" pageId="5" pageNumber="314">C. bicarinata</emphasis>
|
||||
</taxonomicName>
|
||||
groups. Posterior probabilities are displayed below branches. Clades are color coded according to their primary geologic terrane, and taxon names reflect the current species description and sampling locality. Taxa in bold represent sequences generated in this study, while those in plain text were taken from GenBank. The map shows sampling localities color coded by clade.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<paragraph id="8BA4CA5D7A0387269483F8E35057F845" blockId="5.[151,885,1907,1933]" box="[151,885,1907,1933]" pageId="5" pageNumber="314">
|
||||
<heading id="D0EC7D317A0387269483F8E35057F845" bold="true" box="[151,885,1907,1933]" fontSize="11" level="1" pageId="5" pageNumber="314" reason="1">
|
||||
<emphasis id="B96F164F7A0387269483F8E35057F845" bold="true" box="[151,885,1907,1933]" pageId="5" pageNumber="314">Estimation of Divergence Times and biogeographic history</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="8BA4CA5D7A0387259483F82B511CFE64" blockId="5.[151,1437,1979,2041]" lastBlockId="6.[151,1437,151,429]" lastPageId="6" lastPageNumber="315" pageId="5" pageNumber="314">
|
||||
We find the DEC+J model to be a significantly better fit to our phylogeny compared to the DEC model (AIC 268.4 v.s 333.7). There are problems with the use of the DEC+J model (
|
||||
<bibRefCitation id="EF8AB7AC7A038726979DF84F57B0F831" author="Ree, R. H. & Sanmartin, I." box="[905,1170,2015,2041]" pageId="5" pageNumber="314" pagination="741 - 749" refId="ref14386" refString="Ree, R. H. & Sanmartin, I. (2018) Conceptual and statistical problems with the DEC + J model of founder-event speciation and its comparison with DEC via model selection. Journal of Biogeography, 45 (4), 741-749. https://doi.org/10.1111/jbi.13173" type="journal article" year="2018">Ree & Sanmartín 2018</bibRefCitation>
|
||||
) with models returning zero dispersal and extinction probabilities. We find similar problems in our biogeographical analysis with d=0 (dispersal) and e=0 (extinction). Although this model seems appropriate for testing biogeographical hypotheses of
|
||||
<taxonomicName id="4C1BB1DE7A00872594A2FF4F53DDFF31" authorityName="Gray" authorityYear="1845" box="[182,255,223,249]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="6" pageNumber="315" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A00872594A2FF4F53DDFF31" box="[182,255,223,249]" italics="true" pageId="6" pageNumber="315">Carlia</emphasis>
|
||||
</taxonomicName>
|
||||
considering their widespread distribution across the Islands of Oceania (
|
||||
<bibRefCitation id="EF8AB7AC7A0087259020FF4F5784FF31" author="Zug, G. R." box="[1076,1190,223,249]" pageId="6" pageNumber="315" pagination="1 - 84" refId="ref16066" refString="Zug, G. R. (2004) Systematics of the Carlia " fusca " lizards (Squamata: Scincidae) of New Guinea and nearby islands. Bishop Museum Bulletin in Zoology, 5, 1-84" type="journal article" year="2004">Zug 2004</bibRefCitation>
|
||||
; Zug & Allison 2010;
|
||||
<bibRefCitation id="EF8AB7AC7A0087259483FE9352B0FED5" author="Donnellan, S. & Couper, P. & Saint, K. & Wheaton, L." box="[151,402,259,285]" pageId="6" pageNumber="315" pagination="1 - 31" refId="ref10572" refString="Donnellan, S., Couper, P., Saint, K. & Wheaton, L. (2009) Systematics of the Carlia fusca complex (Reptilia: Scincidae) from northern Australia. Zootaxa, 2227 (1), 1-31. https://doi.org/10.11646/zootaxa.2227.1.1" type="journal article" year="2009">
|
||||
Donnellan
|
||||
<emphasis id="B96F164F7A0087259500FE935265FED5" box="[276,327,259,285]" italics="true" pageId="6" pageNumber="315">et al</emphasis>
|
||||
. 2009
|
||||
</bibRefCitation>
|
||||
), we recommend caution in the interpretation of the results. We find Australian
|
||||
<taxonomicName id="4C1BB1DE7A0087259136FE935649FED5" authorityName="Gray" authorityYear="1845" box="[1314,1387,259,285]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="6" pageNumber="315" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A0087259136FE935649FED5" box="[1314,1387,259,285]" italics="true" pageId="6" pageNumber="315">Carlia</emphasis>
|
||||
</taxonomicName>
|
||||
and the
|
||||
<taxonomicName id="4C1BB1DE7A00872594D4FEB753D9FE89" authorityName="Dumeril and Bibron" authorityYear="1839" box="[192,251,295,321]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="6" pageNumber="315" phylum="Chordata" rank="species" species="fusca">
|
||||
<emphasis id="B96F164F7A00872594D4FEB753D9FE89" box="[192,251,295,321]" italics="true" pageId="6" pageNumber="315">fusca</emphasis>
|
||||
</taxonomicName>
|
||||
<taxonomicName id="4C1BB1DE7A0087259515FEB752AEFE89" authorityName="Macleay" authorityYear="1877" box="[257,396,295,321]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="6" pageNumber="315" phylum="Chordata" rank="species" species="bicarinata">
|
||||
+
|
||||
<emphasis id="B96F164F7A0087259503FEB752AEFE89" box="[279,396,295,321]" italics="true" pageId="6" pageNumber="315">bicarinata</emphasis>
|
||||
</taxonomicName>
|
||||
group diverge ~16.9 mya (
|
||||
<figureCitation id="1320D6D87A00872596ADFEB751DEFE89" box="[697,764,295,321]" captionStart="FIGURE 3" captionStartId="6.[152,255,1711,1735]" captionTargetBox="[249,1338,466,1675]" captionTargetId="figure-150@6.[236,1351,453,1688]" captionTargetPageId="6" captionText="FIGURE 3. Time calibrated biogeographic reconstruction of rainbow skink dispersal under the best fit DEC+J model generated in BioGeoBears. Node probabilities are represented by pie charts, with the size of colored slices corresponding to the probability of each state at the given node. Nodes with 100% probability and unchanged from the previous node are not listed. For important colonization events, the mean node age is given to the left of the node. The color of the terminal branches represents the area from which the specimen originated. For relationships of New Guinean rainbow skinks that were unresolved in our phylogenetic analysis but resolved here, posterior probabilities are listed under the node indicated by an asterisk (*)." figureDoi="http://doi.org/10.5281/zenodo.14797186" httpUri="https://zenodo.org/record/14797186/files/figure.png" pageId="6" pageNumber="315">Fig. 3</figureCitation>
|
||||
, for confidence intervals on dates see Supplementary
|
||||
<figureCitation id="1320D6D87A0087259147FEB75395FEAD" captionStart="FIGURE 2" captionStartId="5.[152,255,1656,1680]" captionTargetBox="[160,1428,461,1625]" captionTargetId="figure-151@5.[151,1436,453,1633]" captionTargetPageId="5" captionText="FIGURE 2. Pruned subtree based on Bayesian analysis of the con catenated dataset showing expanded relationships within the Carlia fusca and C. bicarinata groups. Posterior probabilities are displayed below branches. Clades are color coded according to their primary geologic terrane, and taxon names reflect the current species description and sampling locality. Taxa in bold represent sequences generated in this study, while those in plain text were taken from GenBank. The map shows sampling localities color coded by clade." figureDoi="http://doi.org/10.5281/zenodo.14797184" httpUri="https://zenodo.org/record/14797184/files/figure.png" pageId="6" pageNumber="315">Figure S2</figureCitation>
|
||||
), followed by the rapid radiation of the
|
||||
<taxonomicName id="4C1BB1DE7A0087259692FEDB51E3FEAD" authorityName="Dumeril and Bibron" authorityYear="1839" box="[646,705,331,357]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="6" pageNumber="315" phylum="Chordata" rank="species" species="fusca">
|
||||
<emphasis id="B96F164F7A0087259692FEDB51E3FEAD" box="[646,705,331,357]" italics="true" pageId="6" pageNumber="315">fusca</emphasis>
|
||||
</taxonomicName>
|
||||
group beginning ~10.4 mya in
|
||||
<collectingCountry id="F30C8ACD7A0087259039FEDB57B5FEAD" box="[1069,1175,331,357]" name="Australia" pageId="6" pageNumber="315">Australia</collectingCountry>
|
||||
. Our data support four independent colonizations of New
|
||||
<collectingCountry id="F30C8ACD7A008725963DFEFF5158FE41" box="[553,634,367,393]" name="Guinea-Bissau" pageId="6" pageNumber="315">Guinea</collectingCountry>
|
||||
from
|
||||
<collectingCountry id="F30C8ACD7A00872596D6FEFF500EFE41" box="[706,812,367,393]" name="Australia" pageId="6" pageNumber="315">Australia</collectingCountry>
|
||||
; single invasions by
|
||||
<taxonomicName id="4C1BB1DE7A0087259034FEFF57BEFE40" authorityName="de Vis" authorityYear="1884" box="[1056,1180,367,392]" class="Squamata" family="Scincidae" genus="Lygisaurus" kingdom="Animalia" pageId="6" pageNumber="315" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A0087259034FEFF57BEFE40" box="[1056,1180,367,392]" italics="true" pageId="6" pageNumber="315">Lygisaurus</emphasis>
|
||||
</taxonomicName>
|
||||
and the
|
||||
<taxonomicName id="4C1BB1DE7A0087259110FEFF56BFFE41" authorityName="Macleay" authorityYear="1877" box="[1284,1437,367,393]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="6" pageNumber="315" phylum="Chordata" rank="species" species="bicarinata">
|
||||
<emphasis id="B96F164F7A0087259110FEFF56BFFE41" box="[1284,1437,367,393]" italics="true" pageId="6" pageNumber="315">C. bicarinata</emphasis>
|
||||
</taxonomicName>
|
||||
group, and two by the
|
||||
<taxonomicName id="4C1BB1DE7A0087259587FE0352CDFE65" authorityName="Dumeril and Bibron" authorityYear="1839" box="[403,495,403,429]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="6" pageNumber="315" phylum="Chordata" rank="species" species="fusca">
|
||||
<emphasis id="B96F164F7A0087259587FE0352CDFE65" box="[403,495,403,429]" italics="true" pageId="6" pageNumber="315">C. fusca</emphasis>
|
||||
</taxonomicName>
|
||||
group.
|
||||
</paragraph>
|
||||
<caption id="DF649AD57A008725948CF93F578AF8B3" ID-DOI="http://doi.org/10.5281/zenodo.14797186" ID-Zenodo-Dep="14797186" httpUri="https://zenodo.org/record/14797186/files/figure.png" pageId="6" pageNumber="315" startId="6.[152,255,1711,1735]" targetBox="[249,1338,466,1675]" targetPageId="6" targetType="figure">
|
||||
<paragraph id="8BA4CA5D7A008725948CF93F578AF8B3" blockId="6.[151,1437,1711,1915]" pageId="6" pageNumber="315">
|
||||
<emphasis id="B96F164F7A008725948CF93F5235F90F" bold="true" box="[152,279,1711,1735]" pageId="6" pageNumber="315">FIGURE 3.</emphasis>
|
||||
Time calibrated biogeographic reconstruction of rainbow skink dispersal under the best fit DEC+J model generated in BioGeoBears. Node probabilities are represented by pie charts, with the size of colored slices corresponding to the probability of each state at the given node. Nodes with 100% probability and unchanged from the previous node are not listed. For important colonization events, the mean node age is given to the left of the node. The color of the terminal branches represents the area from which the specimen originated. For relationships of New Guinean rainbow skinks that were unresolved in our phylogenetic analysis but resolved here, posterior probabilities are listed under the node indicated by an asterisk (*).
|
||||
</paragraph>
|
||||
</caption>
|
||||
<paragraph id="8BA4CA5D7A01872494D3FF07511FFE19" blockId="7.[151,1437,151,465]" pageId="7" pageNumber="316">
|
||||
New Guinean
|
||||
<taxonomicName id="4C1BB1DE7A0187249570FF0752C2FF78" authorityName="de Vis" authorityYear="1884" box="[356,480,151,176]" class="Squamata" family="Scincidae" genus="Lygisaurus" kingdom="Animalia" pageId="7" pageNumber="316" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A0187249570FF0752C2FF78" box="[356,480,151,176]" italics="true" pageId="7" pageNumber="316">Lygisaurus</emphasis>
|
||||
</taxonomicName>
|
||||
diverged ~8.7 mya, dispersing to the Craton and then the EPCT, while the
|
||||
<taxonomicName id="4C1BB1DE7A018724911DFF0756BFFF79" authorityName="Macleay" authorityYear="1877" box="[1289,1437,151,177]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="7" pageNumber="316" phylum="Chordata" rank="species" species="bicarinata">
|
||||
<emphasis id="B96F164F7A018724911DFF0756BFFF79" box="[1289,1437,151,177]" italics="true" pageId="7" pageNumber="316">C. bicarinata</emphasis>
|
||||
</taxonomicName>
|
||||
group dispersed directly to the EPCT (~7.0mya). The first invasion of the
|
||||
<taxonomicName id="4C1BB1DE7A01872497CFFF2B5715FF1D" authorityName="Dumeril and Bibron" authorityYear="1839" box="[987,1079,187,213]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="7" pageNumber="316" phylum="Chordata" rank="species" species="fusca">
|
||||
<emphasis id="B96F164F7A01872497CFFF2B5715FF1D" box="[987,1079,187,213]" italics="true" pageId="7" pageNumber="316">C. fusca</emphasis>
|
||||
</taxonomicName>
|
||||
group to New
|
||||
<collectingCountry id="F30C8ACD7A01872490F6FF2B5611FF1D" box="[1250,1331,187,213]" name="Guinea-Bissau" pageId="7" pageNumber="316">Guinea</collectingCountry>
|
||||
occurred ~9.8 mya into either the Craton or the EPCT (the relationships between
|
||||
<taxonomicName id="4C1BB1DE7A01872497F9FF4F5746FF30" authorityName="Zug and Allison" authorityYear="2006" box="[1005,1124,223,249]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="7" pageNumber="316" phylum="Chordata" rank="species" species="caesius">
|
||||
<emphasis id="B96F164F7A01872497F9FF4F5746FF30" box="[1005,1124,223,249]" italics="true" pageId="7" pageNumber="316">C. caesius</emphasis>
|
||||
</taxonomicName>
|
||||
from the Craton is poorly resolved in our phylogenetic analysis (.56, see
|
||||
<figureCitation id="1320D6D87A01872496B4FE9351C0FED5" box="[672,738,259,285]" captionStart="FIGURE 2" captionStartId="5.[152,255,1656,1680]" captionTargetBox="[160,1428,461,1625]" captionTargetId="figure-151@5.[151,1436,453,1633]" captionTargetPageId="5" captionText="FIGURE 2. Pruned subtree based on Bayesian analysis of the con catenated dataset showing expanded relationships within the Carlia fusca and C. bicarinata groups. Posterior probabilities are displayed below branches. Clades are color coded according to their primary geologic terrane, and taxon names reflect the current species description and sampling locality. Taxa in bold represent sequences generated in this study, while those in plain text were taken from GenBank. The map shows sampling localities color coded by clade." figureDoi="http://doi.org/10.5281/zenodo.14797184" httpUri="https://zenodo.org/record/14797184/files/figure.png" pageId="7" pageNumber="316">Fig. 2</figureCitation>
|
||||
) and the probability of colonization through the Craton is only slightly higher than the EPCT). The EPCT appears to have served as a “launching point” for dispersal to the fold belt and Accreted terranes as well as island dispersal and speciation, with Darnley, Fergusson, Woodlark, and Sudest populations all originating from the EPCT. The second
|
||||
<taxonomicName id="4C1BB1DE7A0187249717FEFF501CFE41" authorityName="Dumeril and Bibron" authorityYear="1839" box="[771,830,367,393]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="7" pageNumber="316" phylum="Chordata" rank="species" species="fusca">
|
||||
<emphasis id="B96F164F7A0187249717FEFF501CFE41" box="[771,830,367,393]" italics="true" pageId="7" pageNumber="316">fusca</emphasis>
|
||||
</taxonomicName>
|
||||
group colonization event involves the dispersal of the
|
||||
<collectingCountry id="F30C8ACD7A0187249483FE0353F9FE65" box="[151,219,403,429]" name="Iceland" pageId="7" pageNumber="316">Island</collectingCountry>
|
||||
clade to the VogelKop peninsula (~4.7mya), with additional long-distance dispersal events to Halmahera, New Ireland,
|
||||
<collectingCountry id="F30C8ACD7A0187249524FE275253FE19" box="[304,369,439,465]" name="Palau" pageId="7" pageNumber="316">Palau</collectingCountry>
|
||||
, and New Britain.
|
||||
</paragraph>
|
||||
<paragraph id="8BA4CA5D7A0187249483FDB2529DFDF5" blockId="7.[151,447,546,573]" box="[151,447,546,573]" pageId="7" pageNumber="316">
|
||||
<heading id="D0EC7D317A0187249483FDB2529DFDF5" bold="true" box="[151,447,546,573]" fontSize="11" level="1" pageId="7" pageNumber="316" reason="1">
|
||||
<emphasis id="B96F164F7A0187249483FDB2529DFDF5" bold="true" box="[151,447,546,573]" pageId="7" pageNumber="316">Morphometric analyses</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="8BA4CA5D7A0187249483FDFB5105FCDD" blockId="7.[151,1437,619,1041]" pageId="7" pageNumber="316">
|
||||
All morphological measurements are reported in supplementary data (
|
||||
<collectorName id="26EEAF8B7A0187249782FDFB50CEFD4D" box="[918,1004,619,645]" pageId="7" pageNumber="316">Table S</collectorName>
|
||||
3). MANOVA tests revealed significant sexual dimorphism in
|
||||
<collectingRegion id="49DF04BF7A018724958EFD1F5105FD61" box="[410,551,655,681]" country="Papua New Guinea" name="West New Britain" pageId="7" pageNumber="316">New Britain</collectingRegion>
|
||||
<taxonomicName id="4C1BB1DE7A0187249625FD1F5158FD61" authorityName="Gray" authorityYear="1845" box="[561,634,655,681]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="7" pageNumber="316" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A0187249625FD1F5158FD61" box="[561,634,655,681]" italics="true" pageId="7" pageNumber="316">Carlia</emphasis>
|
||||
</taxonomicName>
|
||||
(p = 0.01), but not in Lakekamu (p=.174), as Welch’s T-test showed significant differences in HL (p=0.00065, t= 4.20), HW (p=0.0076, t = 3.014), and PlD (p=0.0039, t= 3.50). To remove the effects of sexual dimorphism in interpopulation comparisons, these characters (HL, HW, and PlD) were removed from subsequent analyses.
|
||||
</paragraph>
|
||||
<paragraph id="8BA4CA5D7A01872494D8FC8F57FAFBD9" blockId="7.[151,1437,619,1041]" pageId="7" pageNumber="316">
|
||||
The Broken stick method revealed only PC1 (pectoral width, pelvic width) and PC6 (pelvic depth, pelvic width) (
|
||||
<tableCitation id="C699FFE67A018724948BFCD353D2FC95" box="[159,240,835,861]" captionStart="TABLE 1" captionStartId="8.[152,245,151,175]" captionTargetPageId="8" captionText="TABLE 1. Principal component analysis loadings from the Broken stick method. PC1 and PC6 were found to be significant." httpUri="http://table.plazi.org/id/DF649AD57A0E872B948CFF07522DFF1B" pageId="7" pageNumber="316" tableUuid="DF649AD57A0E872B948CFF07522DFF1B">Table 1</tableCitation>
|
||||
) of our Principal Components Analysis to explain a substantial portion of variance, explaining 41.5% of the cumulative variance. The morphospace resulting from PCA reveals considerable overlap between regions (
|
||||
<figureCitation id="1320D6D87A0187249150FCF756ABFC49" box="[1348,1417,871,897]" captionStart="FIGURE 4" captionStartId="7.[152,255,1621,1645]" captionTargetBox="[156,1430,1070,1592]" captionTargetId="figure-351@7.[151,1435,1065,1597]" captionTargetPageId="7" captionText="FIGURE 4. Carlia morphospace visualized by statistically significant principal components (PC1 and PC6) and PC2, depicting morphometric variables and their variance between regions. Samples are represented by a point, with an ellipse drawn around all points in a population to visualize the area occupied. The populations are color coded according to their designated clade from our phylogenetic analysis, with New Britain from the Island clade and Lakekamu, Maimafu, and Haia from the Fold Belt. Significant overlap is found between Carlia from all regions." figureDoi="http://doi.org/10.5281/zenodo.14797188" httpUri="https://zenodo.org/record/14797188/files/figure.png" pageId="7" pageNumber="316">Fig. 4</figureCitation>
|
||||
).
|
||||
<location id="8EC49C867A0187249483FC1B52E1FC6D" LSID="urn:lsid:plazi:treatment:03B27B4B7A0287249483F98351ADF831:8EC49C867A0187249483FC1B52E1FC6D" box="[151,451,907,933]" name="Results of Tukey Honesty" pageId="7" pageNumber="316" stateProvince="West New Britain">Results of Tukey Honesty</location>
|
||||
significant difference tests of ANOVA results are shown in
|
||||
<tableCitation id="C699FFE67A0187249097FC1B57F9FC6D" box="[1155,1243,907,933]" captionStart="TABLE 2" captionStartId="8.[152,245,579,603]" captionTargetPageId="8" captionText="TABLE 2. Results of Tukey Honesty Significant Differences test run on results of ANOVA. Statistically significant results are denoted by an asterisk (*)." httpUri="http://table.plazi.org/id/DF649AD57A0E872B948CFDD35107FDB7" pageId="7" pageNumber="316" tableUuid="DF649AD57A0E872B948CFDD35107FDB7">Table 2</tableCitation>
|
||||
, with significant differences marked with an asterisk.
|
||||
<collectingRegion id="49DF04BF7A0187249621FC3F519DFC01" box="[565,703,943,969]" country="Papua New Guinea" name="West New Britain" pageId="7" pageNumber="316">New Britain</collectingRegion>
|
||||
and Maimafu were found to contain no significant differences in characters analyzed. No more than 1–2 significant differences were found between other regions apart from
|
||||
<collectingRegion id="49DF04BF7A0187249173FC4353C7FBD9" country="Papua New Guinea" name="West New Britain" pageId="7" pageNumber="316">New Britain</collectingRegion>
|
||||
and Lakekamu, with Lakekamu specimens possessing wider bodies and longer forelimbs.
|
||||
</paragraph>
|
||||
<caption id="DF649AD57A018724948CF9C55022F935" ID-DOI="http://doi.org/10.5281/zenodo.14797188" ID-Zenodo-Dep="14797188" httpUri="https://zenodo.org/record/14797188/files/figure.png" pageId="7" pageNumber="316" startId="7.[152,255,1621,1645]" targetBox="[156,1430,1070,1592]" targetPageId="7" targetType="figure">
|
||||
<paragraph id="8BA4CA5D7A018724948CF9C55022F935" blockId="7.[151,1437,1621,1789]" pageId="7" pageNumber="316">
|
||||
<emphasis id="B96F164F7A018724948CF9C55235F9A5" bold="true" box="[152,279,1621,1645]" pageId="7" pageNumber="316">FIGURE 4.</emphasis>
|
||||
<taxonomicName id="4C1BB1DE7A0187249508F9C5527CF9A5" authorityName="Gray" authorityYear="1845" box="[284,350,1621,1645]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="7" pageNumber="316" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A0187249508F9C5527CF9A5" box="[284,350,1621,1645]" italics="true" pageId="7" pageNumber="316">Carlia</emphasis>
|
||||
</taxonomicName>
|
||||
morphospace visualized by statistically significant principal components (PC1 and PC6) and PC2, depicting morphometric variables and their variance between regions. Samples are represented by a point, with an ellipse drawn around all points in a population to visualize the area occupied. The populations are color coded according to their designated clade from our phylogenetic analysis, with New Britain from the Island clade and Lakekamu, Maimafu, and Haia from the Fold Belt. Significant overlap is found between
|
||||
<taxonomicName id="4C1BB1DE7A0187249606F9755172F935" authorityName="Gray" authorityYear="1845" box="[530,592,1765,1789]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="7" pageNumber="316" phylum="Chordata" rank="genus">Carlia</taxonomicName>
|
||||
from all regions.
|
||||
</paragraph>
|
||||
</caption>
|
||||
<paragraph id="8BA4CA5D7A0187249483F8DF5266F8A1" blockId="7.[151,324,1871,1897]" box="[151,324,1871,1897]" pageId="7" pageNumber="316">
|
||||
<heading id="D0EC7D317A0187249483F8DF5266F8A1" bold="true" box="[151,324,1871,1897]" fontSize="11" level="1" pageId="7" pageNumber="316" reason="1">
|
||||
<emphasis id="B96F164F7A0187249483F8DF5266F8A1" bold="true" box="[151,324,1871,1897]" pageId="7" pageNumber="316">DNA Barcode</emphasis>
|
||||
</heading>
|
||||
</paragraph>
|
||||
<paragraph id="8BA4CA5D7A0187249483F80751ADF831" blockId="7.[151,1437,1943,2041]" pageId="7" pageNumber="316">
|
||||
COI haplotype networks were able to differentiate between recognized species and identify multiple clades that may represent new species (see
|
||||
<figureCitation id="1320D6D87A01872495E8F82B511DF81E" box="[508,575,1979,2006]" captionStart="FIGURE 5" captionStartId="8.[152,255,1842,1866]" captionTargetBox="[156,1429,1027,1812]" captionTargetId="figure-186@8.[151,1436,1020,1819]" captionTargetPageId="8" captionText="FIGURE 5. Haplotype Network for Lygisaurus generated from COI-5P sequences from this study and BOLD. Currently recognized species are found to represent distinct branches.Significant genetic divergence is found between geographic localities of L. curtus, and between L. novaeguineae from Bird Head Peninsula and Freeport." figureDoi="http://doi.org/10.5281/zenodo.14797190" httpUri="https://zenodo.org/record/14797190/files/figure.png" pageId="7" pageNumber="316">Fig. 5</figureCitation>
|
||||
; for simplicity only the network for
|
||||
<taxonomicName id="4C1BB1DE7A01872497C2F82C5770F81D" authorityName="de Vis" authorityYear="1884" box="[982,1106,1980,2005]" class="Squamata" family="Scincidae" genus="Lygisaurus" kingdom="Animalia" pageId="7" pageNumber="316" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A01872497C2F82C5770F81D" box="[982,1106,1980,2005]" italics="true" pageId="7" pageNumber="316">Lygisaurus</emphasis>
|
||||
</taxonomicName>
|
||||
is shown, see Supplementary
|
||||
<figureCitation id="1320D6D87A0187249483F84F5227F831" box="[151,261,2015,2041]" captionStart="FIGURE 2" captionStartId="5.[152,255,1656,1680]" captionTargetBox="[160,1428,461,1625]" captionTargetId="figure-151@5.[151,1436,453,1633]" captionTargetPageId="5" captionText="FIGURE 2. Pruned subtree based on Bayesian analysis of the con catenated dataset showing expanded relationships within the Carlia fusca and C. bicarinata groups. Posterior probabilities are displayed below branches. Clades are color coded according to their primary geologic terrane, and taxon names reflect the current species description and sampling locality. Taxa in bold represent sequences generated in this study, while those in plain text were taken from GenBank. The map shows sampling localities color coded by clade." figureDoi="http://doi.org/10.5281/zenodo.14797184" httpUri="https://zenodo.org/record/14797184/files/figure.png" pageId="7" pageNumber="316">Figure S2</figureCitation>
|
||||
for the
|
||||
<taxonomicName id="4C1BB1DE7A0187249549F84F5284F831" authorityName="Gray" authorityYear="1845" box="[349,422,2015,2041]" class="Squamata" family="Scincidae" genus="Carlia" kingdom="Animalia" pageId="7" pageNumber="316" phylum="Chordata" rank="genus">
|
||||
<emphasis id="B96F164F7A0187249549F84F5284F831" box="[349,422,2015,2041]" italics="true" pageId="7" pageNumber="316">Carlia</emphasis>
|
||||
</taxonomicName>
|
||||
haplotype network).
|
||||
</paragraph>
|
||||
</subSubSection>
|
||||
</treatment>
|
||||
</document>
|
||||
Loading…
Reference in a new issue