Add updates up until 2024-08-02 06:02:14
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<document id="C06CBBD5F9976CCBEBE14E7A07BFDE21" ID-DOI="10.12651/JSR.2019.8.2.161" ID-ISSN="2713-8615" ID-Zenodo-Dep="13163467" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="GgImagineBatch" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722577889473" checkinUser="felipe" docAuthor="Jung, Hye Su, Yoon, Jung-Hoon, Kim, Seung-Bum, Yi, Hana, Cho, Jang-Cheon, Joh, Kiseong, Cha, Chang-Jun, Seong, Chi-Nam, Bae, Jin-Woo, Im, Wan-Taek, Kim, Myung Kyum & Jeon, Soon Dong Lee and Che Ok" docDate="2019" docId="222787F180031D11FF54F8C9FEBFFAFC" docLanguage="en" docName="JSpeciesRes.8.2.161-175.pdf" docOrigin="Journal of Species Research 8 (2)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Litorimonas cladophorae IMCC" docType="treatment" docVersion="2" lastPageNumber="169" masterDocId="DE1EFF8980041D19FFC4FFBCFFE9FFD2" masterDocTitle="A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria" masterLastPageNumber="175" masterPageNumber="161" pageNumber="168" updateTime="1722578387980" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:titleInfo id="010E4577F178AFDE553FB0253E8B9093">
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<mods:title id="ACBCA70AE0DC2AA0162DA54FF98F1FD4">A report of 46 unrecorded bacterial species in Korea belonging to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Epsilonproteobacteria</mods:title>
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<mods:namePart id="BC71C1659E384053E60611A1763BD24C">Jung, Hye Su</mods:namePart>
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<mods:affiliation id="0094041FEED5BF9A91CD21A6ABFEFA23">Department of Life Science, Chung-Ang University, Seoul 06974, Republic of Korea</mods:affiliation>
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<mods:namePart id="35F0D2FDAA3859E03EBEE869587CEDBD">Yoon, Jung-Hoon</mods:namePart>
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<mods:affiliation id="A2149F1A21402F30A75F94806CC9C129">Department of Food Science and Biotechnology, Sungkyunkwan University, Suwon 16419, Republic of Korea</mods:affiliation>
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<mods:namePart id="08E1D3C9651CDBE7D5EB99052326450F">Kim, Seung-Bum</mods:namePart>
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<mods:affiliation id="4310AFEA6BA327717E6543289704FBFF">Department of Microbiology, Chungnam National University, Daejeon 34134, Republic of Korea</mods:affiliation>
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<mods:namePart id="BB034B0E26A9867069C49A17188AA8C6">Yi, Hana</mods:namePart>
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<mods:affiliation id="AC0EB423720EFDD9EAA13E022ABB8029">School of Biosystem and Biomedical Science, Department of Public Health Science, Korea University, Seoul 02841, Republic of Korea</mods:affiliation>
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<mods:namePart id="54AC12C8E1BDB38DD56FAA3C2F83EECD">Cho, Jang-Cheon</mods:namePart>
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<mods:affiliation id="7C6E0A445DB1FB5B4ACB298EC9979703">Department of Biological Sciences, Inha University, Incheon 22212, Republic of Korea</mods:affiliation>
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<mods:namePart id="41A3B7A477B6088F5E89943D5D29012B">Joh, Kiseong</mods:namePart>
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<mods:affiliation id="61E42EF9E651A0C01645325056C4D9F7">Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Geonggi 02450, Republic of Korea</mods:affiliation>
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<mods:namePart id="2A5C9B4F7D0D7A2E3B2ADD113A8800AF">Cha, Chang-Jun</mods:namePart>
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<mods:affiliation id="0232EDF2DEA6B2CBD959B5692D9DDA24">Department of Systems Biotechnology, Chung-Ang University, Anseong 17546, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="3F48D47808B1C9FEB63E28941B4A1FCC" type="personal">
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<mods:namePart id="BD74A3CC421514299CF9EE6FCEE5412A">Seong, Chi-Nam</mods:namePart>
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<mods:affiliation id="E24C432CBBC95ADD33C406D3710CB92B">Department of Biology, Sunchon National University, Suncheon 57922, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="C868746DC4A4BCFB114A54BD8ADE54D6" type="personal">
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<mods:namePart id="91A24DA13D1F1202821BCFFEF5879606">Bae, Jin-Woo</mods:namePart>
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<mods:affiliation id="8E47DCDAE23E2DF8A99CE5972BAA724E">Department of Biology, Kyung Hee University, Seoul 02453, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="63D5BD29383E176270EE30BD353E0BA5" type="personal">
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<mods:namePart id="607FCA116576FBCEE90248532BFD9F50">Im, Wan-Taek</mods:namePart>
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<mods:affiliation id="25C9294DFD4C796BBADB9D71D701B42C">Department of Biotechnology, Hankyong National University, Anseong 17546, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:namePart id="DACF6DADA8F8A74BC8694E4F9454887A">Kim, Myung Kyum</mods:namePart>
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<mods:affiliation id="38DD9F744793C986C21A8CA36683D49B">Department of Bio and Environmental Technology, College of Natural Science, Seoul Women’s University, Seoul 01797, Republic of Korea</mods:affiliation>
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<mods:name id="D0F4A329A8C3B1E36B8945803F3ADD6D" type="personal">
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<mods:namePart id="3F3B16FB683432A859070A929CCCF37E">Jeon, Soon Dong Lee and Che Ok</mods:namePart>
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<mods:title id="67E790FE79EE6A6DB9413C35569FB962">Journal of Species Research</mods:title>
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<mods:date id="1D277F58E9E6D5678F40BE786A584B04">2019</mods:date>
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<mods:number id="2BC9A846F98F37D459C834F2CF6F653A">8</mods:number>
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<mods:number id="E17060A4F4865B9DBB711A0E2DF2985F">2</mods:number>
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<mods:classification id="C97B2518D60F30A68E5F68A2A46AE6A4">journal article</mods:classification>
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<mods:identifier id="B98F8412DDB87BA84967ACE06350FC8B" type="DOI">10.12651/JSR.2019.8.2.161</mods:identifier>
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<mods:identifier id="AE003DE2BDF4F7EA0C73276D2CCDFC81" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="91F0858B9356DD8173E0A430D2A88C2A" type="Zenodo-Dep">13163467</mods:identifier>
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<treatment id="222787F180031D11FF54F8C9FEBFFAFC" LSID="urn:lsid:plazi:treatment:222787F180031D11FF54F8C9FEBFFAFC" httpUri="http://treatment.plazi.org/id/222787F180031D11FF54F8C9FEBFFAFC" lastPageId="8" lastPageNumber="169" pageId="7" pageNumber="168">
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<subSubSection id="E294656C80031D1EFF54F8C9FA6CF86E" pageId="7" pageNumber="168" type="nomenclature">
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<paragraph id="AA3136E780031D1EFF54F8C9FD3DF85F" blockId="7.[144,724,1908,1933]" box="[144,724,1908,1933]" pageId="7" pageNumber="168">
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<heading id="F179818B80031D1EFF54F8C9FD3DF85F" box="[144,724,1908,1933]" fontSize="10" level="2" pageId="7" pageNumber="168" reason="5">
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<emphasis id="98FAEAF580031D1EFF54F8C9FD3DF85F" bold="true" box="[144,724,1908,1933]" pageId="7" pageNumber="168">
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Description of
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<taxonomicName id="6D8E4D6480031D1EFEF7F8C9FD7BF85F" authority="IMCC" authorityName="IMCC" box="[307,658,1908,1933]" class="Alphaproteobacteria" family="Hyphomonadaceae" genus="Litorimonas" kingdom="Bacteria" order="Caulobacterales" pageId="7" pageNumber="168" phylum="Proteobacteria" rank="species" species="cladophorae">
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<emphasis id="98FAEAF580031D1EFEF7F8C9FDAAF85E" bold="true" box="[307,579,1908,1933]" italics="true" pageId="7" pageNumber="168">Litorimonas cladophorae</emphasis>
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IMCC
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</taxonomicName>
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34185
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</emphasis>
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</heading>
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</paragraph>
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<paragraph id="AA3136E780031D1EFF62F81AFA6CF86E" blockId="7.[166,748,1958,1982]" lastBlockId="7.[809,1414,1698,1980]" pageId="7" pageNumber="168">
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Cells are gram-staining-negative, non-flagellated, and rod-shaped. Colonies are circular, entire, raised, and red orange-colored after three days of incubation at 25℃ on R2A agar using seawater. Positive for esculin hydrolysis and
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<emphasis id="98FAEAF580031D1EFC9CF8BFFC8EF8C9" box="[856,871,1795,1819]" italics="true" pageId="7" pageNumber="168">β</emphasis>
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-galactosidase activity. Negative for nitrate reduction, indole production, glucose fermentation, and arginine dihydrolase, urease, and gelatinase activity. Does not utilize
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<subScript id="360A34A280031D1EFCB3F8D6FC62F8AE" attach="right" box="[887,907,1892,1916]" fontSize="7" pageId="7" pageNumber="168">D-</subScript>
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glucose,
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<subScript id="360A34A280031D1EFC35F8D6FBEDF8AE" attach="right" box="[1009,1028,1892,1916]" fontSize="7" pageId="7" pageNumber="168">L-</subScript>
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arabinose,
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<subScript id="360A34A280031D1EFBBBF8D6FB7DF8A9" attach="right" box="[1151,1172,1892,1915]" fontSize="7" pageId="7" pageNumber="168">D-</subScript>
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mannose,
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<subScript id="360A34A280031D1EFAC3F8D6FAF5F8AE" attach="right" box="[1287,1308,1892,1916]" fontSize="7" pageId="7" pageNumber="168">D-</subScript>
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mannitol,
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<emphasis id="98FAEAF580031D1EFCEDF839FCD2F84E" box="[809,827,1925,1948]" italics="true" pageId="7" pageNumber="168">N</emphasis>
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-acetyl-glucosamine, D- maltose, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate,
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</paragraph>
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</subSubSection>
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<caption id="FEF1666F800C1D11FF6BFBF8FA7EFB42" ID-DOI="http://doi.org/10.5281/zenodo.13163481" ID-Zenodo-Dep="13163481" httpUri="https://zenodo.org/record/13163481/files/figure.png" pageId="8" pageNumber="169" startId="8.[175,208,1092,1114]" targetBox="[299,1318,261,1057]" targetPageId="8" targetType="figure">
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<paragraph id="AA3136E7800C1D11FF6BFBF8FA7EFB42" blockId="8.[175,1446,1092,1168]" pageId="8" pageNumber="169">
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<emphasis id="98FAEAF5800C1D11FF6BFBF8FF04FB88" bold="true" box="[175,237,1092,1114]" pageId="8" pageNumber="169">Fig. 6.</emphasis>
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Neighbor-joining phylogenetic tree, based on 16S rRNA sequences, showing the phylogenetic relationship between strain LPB0305 isolated in this study and its relatives in the order
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<taxonomicName id="6D8E4D64800C1D11FD4FFBE3FCD4FBA6" box="[651,829,1119,1140]" class="Epsilonproteobacteria" kingdom="Bacteria" order="Campylobacterales" pageId="8" pageNumber="169" phylum="Proteobacteria" rank="order">
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<emphasis id="98FAEAF5800C1D11FD4FFBE3FCD4FBA6" box="[651,829,1119,1140]" italics="true" pageId="8" pageNumber="169">Campylobacterales</emphasis>
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</taxonomicName>
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in the class
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<taxonomicName id="6D8E4D64800C1D11FC72FBE3FB6AFBA6" box="[950,1155,1119,1140]" class="Epsilonproteobacteria" kingdom="Bacteria" pageId="8" pageNumber="169" phylum="Proteobacteria" rank="class">
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<emphasis id="98FAEAF5800C1D11FC72FBE3FB6AFBA6" box="[950,1155,1119,1140]" italics="true" pageId="8" pageNumber="169">Epsilonproteobacteria</emphasis>
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</taxonomicName>
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.
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<taxonomicName id="6D8E4D64800C1D11FB55FBE3FF02FB5D" authority="GIMN" authorityName="GIMN" class="Betaproteobacteria" family="Burkholderiaceae" genus="Burkholderia" kingdom="Bacteria" order="Burkholderiales" pageId="8" pageNumber="169" phylum="Proteobacteria" rank="species" species="dabaoshanensis">
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<emphasis id="98FAEAF5800C1D11FB55FBE3FA4CFBA6" box="[1169,1445,1119,1140]" italics="true" pageId="8" pageNumber="169">Burkholderia dabaoshanensis</emphasis>
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GIMN
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</taxonomicName>
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1.004
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<superScript id="5DFB9BAF800C1D11FED9FBCAFECFFB56" attach="left" box="[285,294,1142,1156]" fontSize="6" pageId="8" pageNumber="169">T</superScript>
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(FJ210816) was used as an outgroup. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.02 changes per nucleotide.
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</paragraph>
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</caption>
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<subSubSection id="E294656C800C1D11FF6AFB6AFEBFFAFC" pageId="8" pageNumber="169" type="description">
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<paragraph id="AA3136E7800C1D11FF6AFB6AFEBFFAFC" blockId="8.[174,779,1238,1327]" pageId="8" pageNumber="169">
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and phenylacetic acid. Strain IMCC34185 (
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<emphasis id="98FAEAF5800C1D11FD53FB6AFD42FB3C" bold="true" box="[663,683,1238,1262]" pageId="8" pageNumber="169">=</emphasis>
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VYWGBAC000000119) was isolated from a tidal flat sample,
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<collectingRegion id="684AF805800C1D11FF6AFAABFEECFAFD" box="[174,261,1303,1327]" country="South Korea" name="Incheon" pageId="8" pageNumber="169">Incheon</collectingRegion>
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,
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<collectingCountry id="D2997677800C1D11FECBFAABFEBBFAFC" box="[271,338,1303,1326]" name="South Korea" pageId="8" pageNumber="169">Korea</collectingCountry>
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.
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</paragraph>
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</subSubSection>
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||||
</treatment>
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||||
</document>
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||||
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