212 lines
11 KiB
XML
212 lines
11 KiB
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<document ID-DOI="http://doi.org/10.5281/zenodo.5641186" ID-GBIF-Dataset="4ccd8e3e-a53f-4a61-8f59-2da403a05489" ID-GBIF-Taxon="114923860" ID-Zenodo-Dep="5641186" checkinTime="1441266711358" checkinUser="donat" docAuthor="Jiang Bian, Yan Li, Jian Wang, Fu-Hang Song, Mei Liu, Huan-Qin Dai, Biao Ren, Hong Gao, Xinling Hu, Zhi-Heng Liu, Wen-Jun Li & Li-Xin Zhang" docDate="2009" docId="03F2878D2228C53DFFC00AA18BD54323" docLanguage="en" docName="ijs.0.000026-0.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 59" docTitle="Amycolatopsis marina Bian, Li, Wang, Song, Liu, Dai, Ren, Gao, Hu, Liu, Li & Zhang, 2009, sp. nov." docType="treatment" docVersion="7" lastPageNumber="480" masterDocId="FFCBFFF5222BC53EFFB10A168A084656" masterDocTitle="Amycolatopsis marina sp. nov., an actinomycete isolated from an ocean sediment" masterLastPageNumber="481" masterPageNumber="477" pageId="3" pageNumber="480" updateTime="1635901763090" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Amycolatopsis marina sp. nov., an actinomycete isolated from an ocean sediment</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Jiang Bian</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Yan Li</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Jian Wang</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Fu-Hang Song</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Mei Liu</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Huan-Qin Dai</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Biao Ren</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Hong Gao</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Xinling Hu</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Zhi-Heng Liu</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Wen-Jun Li</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Li-Xin Zhang</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>International Journal of Systematic and Evolutionary Microbiology</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2009</mods:date>
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<mods:detail type="volume">
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<mods:number>59</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>477</mods:start>
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<mods:end>481</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">10.1099/ijs.0.000026-0</mods:identifier>
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</mods:mods>
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<treatment ID-DOI="http://doi.org/10.5281/zenodo.5641186" ID-GBIF-Taxon="114923860" ID-Zenodo-Dep="5641186" LSID="urn:lsid:plazi:treatment:03F2878D2228C53DFFC00AA18BD54323" httpUri="http://treatment.plazi.org/id/03F2878D2228C53DFFC00AA18BD54323" lastPageNumber="480" pageId="3" pageNumber="480">
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<subSubSection box="[113,702,183,207]" pageId="3" pageNumber="480" type="nomenclature">
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<paragraph box="[113,702,183,207]" pageId="3" pageNumber="480">
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<emphasis bold="true" box="[113,702,183,207]" pageId="3" pageNumber="480">
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<heading bold="true" box="[113,702,183,207]" fontSize="10" level="1" pageId="3" pageNumber="480" reason="0">
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Description of
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<emphasis bold="true" box="[304,595,183,207]" italics="true" pageId="3" pageNumber="480">
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<taxonomicName box="[304,595,183,207]" class="Actinobacteria" family="Pseudonocardiaceae" genus="Amycolatopsis" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="480" phylum="Actinobacteria" rank="species" species="marina" status="sp. nov.">Amycolatopsis marina</taxonomicName>
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</emphasis>
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<taxonomicNameLabel box="[604,702,183,207]" pageId="3" pageNumber="480" rank="species">sp. nov.</taxonomicNameLabel>
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</heading>
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</emphasis>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="3" pageNumber="480" type="etymology">
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<paragraph pageId="3" pageNumber="480">
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<emphasis box="[113,345,228,252]" italics="true" pageId="3" pageNumber="480">
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<taxonomicName box="[113,345,228,252]" class="Actinobacteria" family="Pseudonocardiaceae" genus="Amycolatopsis" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="480" phylum="Actinobacteria" rank="species" species="marina">Amycolatopsis marina</taxonomicName>
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</emphasis>
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(ma.ri'na. L. fem. adj.
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<emphasis box="[600,677,228,252]" italics="true" pageId="3" pageNumber="480">marina</emphasis>
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of the sea, marine).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="3" pageNumber="480" type="description">
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<paragraph pageId="3" pageNumber="480">
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Cells are Gram-positive, aerobic and non-motile and produce white aerial mycelium sparsely on ISP
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<number box="[675,688,336,361]" pageId="3" pageNumber="480" value="2.0">2</number>
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agar medium. The branched yellow to yellow–brown substrate mycelium fragments into rod-like elements. No diffusion pigments are produced on any of the media tested. Catalase-positive and oxidase-negative. Negative for urease and negative for reduction of nitrate to nitrite. H
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<number box="[655,664,501,518]" pageId="3" pageNumber="480" value="2.0">2</number>
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S is not produced. Growth occurs between pH 6.0 and 9.0, between
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<number box="[113,138,553,577]" pageId="3" pageNumber="480" value="10.0">10</number>
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and
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<number box="[203,228,553,577]" pageId="3" pageNumber="480" value="45.0">45</number>
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°C and between
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<number box="[428,460,553,577]" pageId="3" pageNumber="480" value="0.5">0.5</number>
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and
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<number box="[524,550,553,577]" pageId="3" pageNumber="480" value="12.0">12</number>
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% NaCl, but not above
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<number box="[187,212,584,608]" pageId="3" pageNumber="480" value="45.0">45</number>
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°C or above
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<number box="[368,394,584,608]" pageId="3" pageNumber="480" value="12.0">12</number>
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% NaCl. The optimum growth pH, temperature and NaCl are 7.0–8.0,
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<number box="[580,605,615,639]" pageId="3" pageNumber="480" value="28.0">28</number>
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°C and
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<number box="[708,721,615,639]" pageId="3" pageNumber="480" value="5.0">5</number>
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% NaCl. Resistant to rifampicin, amikacin, carbenicillin, tobramycin, kanamycin, clarithromycin and penicillin G (each at
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<number box="[213,238,708,732]" pageId="3" pageNumber="480" value="30.0">30</number>
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µg), but sensitive to gentamicin, novobiocin, streptomycin, doxycycline, acetylspiramycin, carbenicillin, midecamycin, minocycline, cephalothin and chloramphenicol. (+)-D-Fructose, (+)-D-galactose, (+)-cellobiose,
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<emphasis box="[182,226,832,856]" italics="true" pageId="3" pageNumber="480">myo</emphasis>
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-inositol, (+)-L-rhamnose salicin, (+)-maltose, (+)-D-mannitol and (+)-trehalose are utilized as carbon sources, but sorbitol, (+)-D-lactose, dextrin, arabinose, (+)-raffinose and (‾)-sucrose are not. Decomposes gelatin, hypoxanthine, xanthine, allantoin and starch, but not L-tyrosine or casein. Cell-wall hydrolysates contain
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<emphasis box="[113,164,1017,1042]" italics="true" pageId="3" pageNumber="480">meso</emphasis>
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-diaminopimelic acid, arabinose and galactose. MK-
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<number box="[113,126,1048,1073]" pageId="3" pageNumber="480" value="9.0">9</number>
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(
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<collectionCode box="[135,156,1048,1073]" pageId="3" pageNumber="480">H</collectionCode>
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<number box="[156,166,1059,1075]" pageId="3" pageNumber="480" value="4.0">4</number>
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) (
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<number box="[191,218,1048,1073]" pageId="3" pageNumber="480" value="79.0">79</number>
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%) is the predominant menaquinone; MK-
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<number box="[689,700,1048,1073]" pageId="3" pageNumber="480" value="8.0">8</number>
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(
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<collectionCode box="[708,728,1048,1073]" pageId="3" pageNumber="480">H</collectionCode>
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<number box="[728,738,1059,1075]" pageId="3" pageNumber="480" value="4.0">4</number>
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) (
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<number box="[122,148,1079,1104]" pageId="3" pageNumber="480" value="13.0">13</number>
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%) is also present. The phospholipids comprise diphosphatidylglycerol, phosphatidylmethylethanolamine, phosphatidylethanolamine, phosphatidylinositol, phosphatidylglycerol and phosphatidylinositol mannoside. The major cellular fatty acids are iso-C
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<number box="[509,528,1213,1230]" pageId="3" pageNumber="480" value="16.0">16</number>
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: 0 and iso-C
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<number box="[673,692,1213,1230]" pageId="3" pageNumber="480" value="16.0">16</number>
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:
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<geoCoordinate box="[703,740,1203,1230]" pageId="3" pageNumber="480">
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0
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<number box="[725,740,1203,1227]" pageId="3" pageNumber="480" value="2.0">2</number>
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</geoCoordinate>
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- OH. The DNA G+C content of the
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<typeStatus box="[588,633,1234,1258]" pageId="3" pageNumber="480">type</typeStatus>
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strain is
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<number box="[113,157,1265,1289]" pageId="3" pageNumber="480" value="70.1">70.1</number>
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mol%.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="3" pageNumber="480" type="materials_examined">
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<paragraph pageId="3" pageNumber="480">
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<materialsCitation ID-GBIF-Occurrence="1227780035" collectionCode="5 CGMCC, NBRC" country="China" httpUri-0="http://www.straininfo.net/strainPassport.action?sort=culture&dir=asc&cultureId=837665" httpUri-1="http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=00104263" location="China" pageId="3" pageNumber="480" specimenCode="Ms 392 A, 4.3568, 104263" specimenCount="1" typeStatus="type strain">
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The
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<typeStatus box="[168,289,1311,1335]" pageId="3" pageNumber="480">type strain</typeStatus>
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,
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<specimenCode box="[307,395,1311,1335]" pageId="3" pageNumber="480">
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Ms
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<number box="[339,377,1311,1335]" pageId="3" pageNumber="480" value="392.0">392</number>
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A
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</specimenCode>
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T (
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<collectionCode box="[431,548,1311,1335]" pageId="3" pageNumber="480">
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<number box="[431,453,1311,1335]" pageId="3" pageNumber="480" value="5.0">=</number>
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CGMCC
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</collectionCode>
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<number box="[561,631,1311,1335]" pageId="3" pageNumber="480" value="4.3568">
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<specimenCode box="[561,631,1311,1335]" pageId="3" pageNumber="480">4.3568</specimenCode>
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</number>
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T
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<number box="[656,679,1311,1335]" pageId="3" pageNumber="480" value="5.0">=</number>
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<collectionCode box="[679,748,1311,1335]" collectionName="NBRC" pageId="3" pageNumber="480">NBRC</collectionCode>
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<number box="[113,189,1342,1366]" pageId="3" pageNumber="480" value="104263.0">
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<specimenCode box="[113,189,1342,1366]" pageId="3" pageNumber="480">104263</specimenCode>
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</number>
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T), was isolated from an ocean-sediment sample collected in the South
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<collectingCountry box="[361,426,1373,1397]" name="China" pageId="3" pageNumber="480" value="China">China</collectingCountry>
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Sea
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</materialsCitation>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document>
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