191 lines
17 KiB
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191 lines
17 KiB
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<document id="B28DD912AC90DE25CEF4DAB16CC75732" ID-CLB-Dataset="20561" ID-DOI="10.1099/ijsem.0.004310" ID-GBIF-Dataset="9ea9f51c-bd8e-4fb7-a83d-ce846c27caf8" ID-ISSN="1466-5034" ID-Zenodo-Dep="6223959" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1645465944130" checkinUser="felipe" docAuthor="Xie, Yuhui, Zhou, Shuangqing, Xu, Yun, Wu, Wenqiang, Xia, Wei, Zhang, Rongping, Huang, Dongyi & Huang, Xiaolong" docDate="2020" docId="03A4F51ABA16FFC1FC8EFD642432B890" docLanguage="en" docName="IntJSystEvolMicrobiol.70.8.4537-4543.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (8)" docSource="http://dx.doi.org/10.1099/ijsem.0.004310" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Gordonia mangrovi Xie & Zhou & Xu & Wu & Xia & Zhang & Huang & Huang 2020, SP. NOV." docType="treatment" docVersion="9" lastPageNumber="4541" masterDocId="FF9D8D62BA12FFC5FFB2FFB62020BF33" masterDocTitle="Gordonia mangrovi sp. nov., a novel actinobacterium isolated from mangrove soil in Hainan" masterLastPageNumber="4543" masterPageNumber="4537" pageNumber="4541" updateTime="1699315856201" updateUser="ExternalLinkService">
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<mods:titleInfo id="AA877678D28669A2AAA4E707704A456B">
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<mods:title id="749116F104049CDAB8CEE81E9230F102">Gordonia mangrovi sp. nov., a novel actinobacterium isolated from mangrove soil in Hainan</mods:title>
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</mods:titleInfo>
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<mods:namePart id="A23597F862854C2ED82340261842F805">Xie, Yuhui</mods:namePart>
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</mods:role>
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<mods:namePart id="E203E0DA8DCCBA0BA3900BC2737E0135">Zhou, Shuangqing</mods:namePart>
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</mods:name>
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<mods:namePart id="3EAA4427CD4E6AE1DAD27BBFF86E9FC5">Xu, Yun</mods:namePart>
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</mods:name>
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</mods:role>
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<mods:namePart id="A3BBF773F811BD69304385BD1711E2DB">Wu, Wenqiang</mods:namePart>
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</mods:role>
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<mods:namePart id="086A93F2923BADC91DBC946C7F88E161">Xia, Wei</mods:namePart>
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</mods:role>
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<mods:namePart id="2351EC141BA475C5D275DCC187CCF2C7">Zhang, Rongping</mods:namePart>
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</mods:name>
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</mods:role>
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<mods:namePart id="2733B61B0F6A89E3B9EAD832525E14D2">Huang, Dongyi</mods:namePart>
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</mods:name>
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</mods:role>
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<mods:namePart id="08BC8BB8148073961BB863F235FAFE64">Huang, Xiaolong</mods:namePart>
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</mods:name>
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<mods:typeOfResource id="9F2B1615B5C57D91FD56B69D2915161F">text</mods:typeOfResource>
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<mods:title id="CD44BEA4DF42086D54850529E64B5F46">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="374F986C9444F783E6A85F72E5C34A11">
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<mods:date id="229CFA2226CB4D2EE551570DBF617A1D">2020</mods:date>
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<mods:detail id="50435BAE3234A97C1A19BFA852A8A346" type="pubDate">
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<mods:number id="6291823A44067E3627DDD22DDD97CCF4">2020-08-01</mods:number>
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<mods:detail id="2C2AAD2A2FAE7259DD1388D1F8170F76" type="volume">
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<mods:number id="97ADBF7D3932D1F86CD8497802DDE6B8">70</mods:number>
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<mods:number id="7F98EA12FAAFDC2BAB1980BF8777DC63">8</mods:number>
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<mods:start id="4199264A73C855616055462896D6693B">4537</mods:start>
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<mods:url id="384B762C8C3967C4C52DABC9D262ECE2">http://dx.doi.org/10.1099/ijsem.0.004310</mods:url>
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</mods:location>
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<mods:classification id="3938B0CAD8A52F6491E8EC995A1AFFA1">journal article</mods:classification>
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<mods:identifier id="651831B22AD319C73C5C4F5906C56261" type="CLB-Dataset">20561</mods:identifier>
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<mods:identifier id="9E2820A91B69B6A35FD3CEF69F160785" type="DOI">10.1099/ijsem.0.004310</mods:identifier>
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<mods:identifier id="61D849DC84BA4333D60C891E5BE794B8" type="ISSN">1466-5034</mods:identifier>
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<mods:identifier id="D1758CA4DE8ADD2C1A23EDA2A4D07F17" type="Zenodo-Dep">6223959</mods:identifier>
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<treatment id="03A4F51ABA16FFC1FC8EFD642432B890" ID-DOI="http://doi.org/10.5281/zenodo.6314486" ID-GBIF-Taxon="193422044" ID-Zenodo-Dep="6314486" LSID="urn:lsid:plazi:treatment:03A4F51ABA16FFC1FC8EFD642432B890" httpUri="http://treatment.plazi.org/id/03A4F51ABA16FFC1FC8EFD642432B890" lastPageNumber="4541" pageId="4" pageNumber="4541">
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<subSubSection id="C3171787BA16FFC1FC8EFD64235DBC27" pageId="4" pageNumber="4541" type="nomenclature">
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<paragraph id="8BB2440CBA16FFC1FC8EFD64235DBC27" blockId="4.[828,1473,722,1955]" pageId="4" pageNumber="4541">
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<heading id="D0FAF360BA16FFC1FC8EFD64235DBC27" allCaps="true" bold="true" fontSize="12" level="2" pageId="4" pageNumber="4541" reason="3">
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<emphasis id="B979981EBA16FFC1FC8EFD64235DBC27" bold="true" pageId="4" pageNumber="4541">
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DESCRIPTION OF
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<taxonomicName id="4C0D3F8FBA16FFC1FB87FD642546BDDC" authority="Xie & Zhou & Xu & Wu & Xia & Zhang & Huang & Huang, 2020" authorityName="Xie & Zhou & Xu & Wu & Xia & Zhang & Huang & Huang" authorityYear="2020" box="[1077,1382,722,751]" class="Magnoliopsida" family="Theaceae" genus="Gordonia" kingdom="Plantae" order="Ericales" pageId="4" pageNumber="4541" phylum="Tracheophyta" rank="species" species="mangrovi" status="sp. nov.">
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<emphasis id="B979981EBA16FFC1FB87FD642546BDDC" bold="true" box="[1077,1382,722,751]" italics="true" pageId="4" pageNumber="4541">GORDONIA MANGROVI</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A24A2565BA16FFC1FADDFD64235DBC27" pageId="4" pageNumber="4541" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C3171787BA16FFC1FC8EFC9523C1BC48" pageId="4" pageNumber="4541" type="etymology">
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<paragraph id="8BB2440CBA16FFC1FC8EFC9523C1BC48" blockId="4.[828,1473,722,1955]" pageId="4" pageNumber="4541">
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<taxonomicName id="4C0D3F8FBA16FFC1FC8EFC95242BBC09" authorityName="Xie & Zhou & Xu & Wu & Xia & Zhang & Huang & Huang" authorityYear="2020" box="[828,1035,803,827]" class="Magnoliopsida" family="Theaceae" genus="Gordonia" kingdom="Plantae" order="Ericales" pageId="4" pageNumber="4541" phylum="Tracheophyta" rank="species" species="mangrovi">
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<emphasis id="B979981EBA16FFC1FC8EFC95242BBC09" box="[828,1035,803,827]" italics="true" pageId="4" pageNumber="4541">Gordonia mangrovi</emphasis>
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</taxonomicName>
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(man.gro
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<emphasis id="B979981EBA16FFC1FBC7FC95245EBC0E" bold="true" box="[1141,1150,803,829]" pageId="4" pageNumber="4541">ˊ</emphasis>
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vi. N.L. gen. n.
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<taxonomicName id="4C0D3F8FBA16FFC1FA94FC9525AABC09" authorityName="Xie & Zhou & Xu & Wu & Xia & Zhang & Huang & Huang" authorityYear="2020" box="[1318,1418,803,826]" class="Magnoliopsida" family="Theaceae" genus="Gordonia" kingdom="Plantae" order="Ericales" pageId="4" pageNumber="4541" phylum="Tracheophyta" rank="species" species="mangrovi">
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<emphasis id="B979981EBA16FFC1FA94FC9525AABC09" box="[1318,1418,803,826]" italics="true" pageId="4" pageNumber="4541">mangrovi</emphasis>
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</taxonomicName>
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of a mangrove, referring to the isolation of the
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<typeStatus id="54B6FAAEBA16FFC1FAB9FCF22519BC6F" box="[1291,1337,836,860]" pageId="4" pageNumber="4541">type</typeStatus>
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strain from mangrove soil).
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</paragraph>
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</subSubSection>
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<subSubSection id="C3171787BA16FFC1FC8EFC252432B890" pageId="4" pageNumber="4541" type="description">
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<paragraph id="8BB2440CBA16FFC1FC8EFC2524FDB981" blockId="4.[828,1473,722,1955]" pageId="4" pageNumber="4541">
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Cells are Gram-stain-positive, aerobic and rod-shaped. Colonies grow well on
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<specimenCode id="DBABEC77BA16FFC1FBB2FC052411BCF8" box="[1024,1073,947,971]" collectionCode="ISP" country="0" httpUri="http://grbio.org/cool/4b8v-x069" name="International Cooperative Project for Description and Deposition of Type Cultures" pageId="4" pageNumber="4541">ISP2</specimenCode>
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agar and are reddish-orange. Grows on
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<specimenCode id="DBABEC77BA16FFC1FCEDFC6523B3BCD8" box="[863,915,979,1003]" collectionCode="ISP" country="0" httpUri="http://grbio.org/cool/4b8v-x069" name="International Cooperative Project for Description and Deposition of Type Cultures" pageId="4" pageNumber="4541">ISP1</specimenCode>
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,
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<specimenCode id="DBABEC77BA16FFC1FC2CFC6523F1BCD8" box="[926,977,979,1003]" collectionCode="ISP" country="0" httpUri="http://grbio.org/cool/4b8v-x069" name="International Cooperative Project for Description and Deposition of Type Cultures" pageId="4" pageNumber="4541">ISP3</specimenCode>
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,
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<specimenCode id="DBABEC77BA16FFC1FC6FFC65242EBCD8" box="[989,1038,979,1003]" collectionCode="ISP" country="0" httpUri="http://grbio.org/cool/4b8v-x069" name="International Cooperative Project for Description and Deposition of Type Cultures" pageId="4" pageNumber="4541">ISP5</specimenCode>
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and
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<specimenCode id="DBABEC77BA16FFC1FBF4FC652457BCD8" box="[1094,1143,979,1003]" collectionCode="ISP" country="0" httpUri="http://grbio.org/cool/4b8v-x069" name="International Cooperative Project for Description and Deposition of Type Cultures" pageId="4" pageNumber="4541">ISP7</specimenCode>
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agar, but not on
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<specimenCode id="DBABEC77BA16FFC1FA83FC652543BCD8" box="[1329,1379,979,1003]" collectionCode="ISP" country="0" httpUri="http://grbio.org/cool/4b8v-x069" name="International Cooperative Project for Description and Deposition of Type Cultures" pageId="4" pageNumber="4541">ISP4</specimenCode>
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or
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<specimenCode id="DBABEC77BA16FFC1FA3BFC65259BBCD8" box="[1417,1467,979,1003]" collectionCode="ISP" country="0" httpUri="http://grbio.org/cool/4b8v-x069" name="International Cooperative Project for Description and Deposition of Type Cultures" pageId="4" pageNumber="4541">ISP6</specimenCode>
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agar. Diffusible pigments including melanoid pigments are not formed. Growth occurs at pH 5–10, at 20–40 °C and in the presence of 0–8% NaCl. Catalase activity and nitrate reduction are positive. Degrades arbutin, but not aesculin, casein, hypoxanthine or xanthine. D-Arabitol,D-fructose, D-glucose,D-mannose, trehalose,L-rhamnose,
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<emphasis id="B979981EBA16FFC1FA9EFB202541BB9E" box="[1324,1377,1174,1197]" italics="true" pageId="4" pageNumber="4541">meso</emphasis>
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-inositol and sucrose are utilized as sole carbon sources, but not cellulose, cellobiose, D-galactose, lactose,D-xylose or raffinose. L-Arginine,L-asparagine,L-cysteine, L-methionine, L-proline, L-serine, L-threonine and L-valine are used as sole nitrogen sources, but not L-histidine orL-phenylalanine. Resistant to chloramphenicol, gentamicin, kanamycin, nalidixic acid, novobiocin, penicillin G, sulfamethoxazole, tetracycline and tobramycin, but sensitive to rifampin. The cell wall contains
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<emphasis id="B979981EBA16FFC1FBBBFA0F241EBAE3" box="[1033,1086,1465,1488]" italics="true" pageId="4" pageNumber="4541">meso</emphasis>
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-diaminopimelic acid. The wholecell sugars are arabinose and galactose. Mycolic acids are present. The menaquinones are MK-9(H 2) an MK-7(H 2). The predominant phospholipids are composed of diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol. The major fatty acids are C
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<subScript id="17894649BA16FFC1FB62F9DF24CBB944" attach="left" box="[1232,1259,1641,1656]" fontSize="6" pageId="4" pageNumber="4541">16:0</subScript>
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, C
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<subScript id="17894649BA16FFC1FABAF9DF2503B944" attach="left" box="[1288,1315,1641,1656]" fontSize="6" pageId="4" pageNumber="4541">16:1</subScript>
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<emphasis id="B979981EBA16FFC1FA95F9EC251AB942" box="[1319,1338,1626,1649]" italics="true" pageId="4" pageNumber="4541">ω</emphasis>
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7
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<emphasis id="B979981EBA16FFC1FAF5F9EC2571B942" box="[1351,1361,1626,1649]" italics="true" pageId="4" pageNumber="4541">c</emphasis>
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/C
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<subScript id="17894649BA16FFC1FADEF9DF25A7B944" attach="left" box="[1388,1415,1641,1656]" fontSize="6" pageId="4" pageNumber="4541">16:1</subScript>
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<emphasis id="B979981EBA16FFC1FA39F9EC25BEB942" box="[1419,1438,1626,1649]" italics="true" pageId="4" pageNumber="4541">ω</emphasis>
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6
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<emphasis id="B979981EBA16FFC1FA18F9EC2594B942" box="[1450,1460,1626,1649]" italics="true" pageId="4" pageNumber="4541">c</emphasis>
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, C
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<subScript id="17894649BA16FFC1FCFCF93C234AB9AB" attach="left" box="[846,874,1674,1688]" fontSize="6" pageId="4" pageNumber="4541">18:0</subScript>
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10-methyl (TBSA), C
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<subScript id="17894649BA16FFC1FBE6F93C2451B9AB" attach="left" box="[1108,1137,1674,1688]" fontSize="6" pageId="4" pageNumber="4541">18:0</subScript>
|
|||
|
|
and C
|
|||
|
|
<subScript id="17894649BA16FFC1FB09F93C24F8B9AB" attach="left" box="[1211,1240,1674,1688]" fontSize="6" pageId="4" pageNumber="4541">18:1</subScript>
|
|||
|
|
<emphasis id="B979981EBA16FFC1FB69F9CC24CEB9A2" box="[1243,1262,1658,1681]" italics="true" pageId="4" pageNumber="4541">ω</emphasis>
|
|||
|
|
9
|
|||
|
|
<emphasis id="B979981EBA16FFC1FB49F9CC2525B9A2" box="[1275,1285,1658,1681]" italics="true" pageId="4" pageNumber="4541">c</emphasis>
|
|||
|
|
. The DNA G+C content of the
|
|||
|
|
<typeStatus id="54B6FAAEBA16FFC1FC6BF92C2427B981" box="[985,1031,1690,1714]" pageId="4" pageNumber="4541">type</typeStatus>
|
|||
|
|
strain is 67.0mol%.
|
|||
|
|
</paragraph>
|
|||
|
|
<paragraph id="8BB2440CBA16FFC1FC8EF97F2432B890" blockId="4.[828,1473,722,1955]" pageId="4" pageNumber="4541">
|
|||
|
|
<materialsCitation id="3B654E51BA16FFC1FC8EF97F2432B890" ID-GBIF-Occurrence="3470317301" collectionCode="HNM" pageId="4" pageNumber="4541" specimenCode="HNM0687T" specimenCount="1" typeStatus="holotype">
|
|||
|
|
The
|
|||
|
|
<typeStatus id="54B6FAAEBA16FFC1FCDAF97C23B6B9D1" box="[872,918,1738,1762]" pageId="4" pageNumber="4541">type</typeStatus>
|
|||
|
|
strain,
|
|||
|
|
<specimenCode id="DBABEC77BA16FFC1FC50F97F247FB9E5" box="[994,1119,1736,1761]" pageId="4" pageNumber="4541">
|
|||
|
|
HNM0687
|
|||
|
|
<superScript id="7C78E944BA16FFC1FBE7F97E247FB9E5" attach="left" box="[1109,1119,1736,1750]" fontSize="6" pageId="4" pageNumber="4541">T</superScript>
|
|||
|
|
</specimenCode>
|
|||
|
|
(=CCTCC AA 2019074
|
|||
|
|
<superScript id="7C78E944BA16FFC1FAEFF97E2547B9E5" attach="right" box="[1373,1383,1736,1750]" fontSize="6" pageId="4" pageNumber="4541">T</superScript>
|
|||
|
|
=KCTC 49383
|
|||
|
|
<superScript id="7C78E944BA16FFC1FC34F95E23B0B9C5" attach="right" box="[902,912,1768,1782]" fontSize="6" pageId="4" pageNumber="4541">T</superScript>
|
|||
|
|
), was isolated from mangrove soil. The GenBank accession number for the 16S rRNA gene of strain HNM0687
|
|||
|
|
<superScript id="7C78E944BA16FFC1FA03F8BF259AB824" attach="none" box="[1457,1466,1801,1815]" fontSize="6" pageId="4" pageNumber="4541">T</superScript>
|
|||
|
|
is
|
|||
|
|
<accessionNumber id="945ED9EFBA16FFC1FCE6F89C23EFB871" box="[852,975,1834,1858]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MN653213" pageId="4" pageNumber="4541">MN653213</accessionNumber>
|
|||
|
|
. The GenBank accession number for the
|
|||
|
|
<emphasis id="B979981EBA16FFC1FA3BF89D259AB871" box="[1417,1466,1835,1858]" italics="true" pageId="4" pageNumber="4541">gyrB</emphasis>
|
|||
|
|
gene of strain HNM0687
|
|||
|
|
<superScript id="7C78E944BA16FFC1FB8DF8FF2469B864" attach="left" box="[1087,1097,1865,1879]" fontSize="6" pageId="4" pageNumber="4541">T</superScript>
|
|||
|
|
is
|
|||
|
|
<accessionNumber id="945ED9EFBA16FFC1FBD1F8FC24FEB851" box="[1123,1246,1866,1890]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MN759309" pageId="4" pageNumber="4541">MN759309</accessionNumber>
|
|||
|
|
. The GenBank accession number for the genome sequence of strain HNM0687
|
|||
|
|
<superScript id="7C78E944BA16FFC1FA03F8DF259BB844" attach="none" box="[1457,1467,1897,1911]" fontSize="6" pageId="4" pageNumber="4541">T</superScript>
|
|||
|
|
is WMBR00000000.
|
|||
|
|
</materialsCitation>
|
|||
|
|
</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
</treatment>
|
|||
|
|
</document>
|