162 lines
15 KiB
XML
162 lines
15 KiB
XML
![]() |
<document id="84266AC16D370D68B0BD5560FBCA6F18" ID-DOI="10.1099/ijsem.0.003819" ID-GBIF-Dataset="99097115-9153-4db8-ba4c-7401c7426c6e" ID-ISSN="1466-5034" ID-Zenodo-Dep="3745034" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1586370084353" checkinUser="felipe" docAuthor="Hu, Jiangmeihui, Han, Chuanyu, Yu, Bing, Zhao, Junwei, Guo, Xiaowei, Shen, Yue, Wang, Xiangjing & Xiang, Wensheng" docDate="2020" docId="C54587BDFFB5B172FFC8F53EE09EFC0C" docLanguage="en" docName="IntJouSysEvoMicro.70.766-772.pdf.imf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (2)" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Actinomadura harenae Hu, Han, Yu, Zhao, Guo, Shen, Wang & Xiang, 2020, SP. NOV." docType="treatment" docVersion="8" lastPageNumber="771" masterDocId="397CFFC5FFB0B177FFB1F07DE52AFFCF" masterDocTitle="Actinomadura harenae sp. nov., a novel actinomycete isolated from sea sand in Sanya" masterLastPageNumber="772" masterPageNumber="766" pageNumber="771" updateTime="1698736569597" updateUser="plazi" zenodo-license-document="CC-BY-4.0">
|
|||
|
<mods:mods id="604694A2D3F30FA98C42318B678363DD" xmlns:mods="http://www.loc.gov/mods/v3">
|
|||
|
<mods:titleInfo id="CE30971318BDF45C836DD2F3FC39F815">
|
|||
|
<mods:title id="0CD15B5141D7266DFD808C2F05D66461">Actinomadura harenae sp. nov., a novel actinomycete isolated from sea sand in Sanya</mods:title>
|
|||
|
</mods:titleInfo>
|
|||
|
<mods:name id="546D7029016FF515059835437D656D25" type="personal">
|
|||
|
<mods:role id="CF3B5319C69CE4BBBA76B18E85EFDF12">
|
|||
|
<mods:roleTerm id="8A2480ADE66072F884B241C5A0DE4F4A">Author</mods:roleTerm>
|
|||
|
</mods:role>
|
|||
|
<mods:namePart id="720C3950601DE4B9C46AFF479B11F327">Hu, Jiangmeihui</mods:namePart>
|
|||
|
</mods:name>
|
|||
|
<mods:name id="D55AA9DBF63DE1A9FEAD843D7CFC1405" type="personal">
|
|||
|
<mods:role id="6C91F195F10D145F923DF24CF9651B9C">
|
|||
|
<mods:roleTerm id="A0415182E6F5C2F2A25F3FE9EF9B75B9">Author</mods:roleTerm>
|
|||
|
</mods:role>
|
|||
|
<mods:namePart id="9DA1AB1F529657FA35D1F27697478C65">Han, Chuanyu</mods:namePart>
|
|||
|
</mods:name>
|
|||
|
<mods:name id="CE8D56F09482201F7F2631C7D528F3DD" type="personal">
|
|||
|
<mods:role id="74CB457F3B8414B1E31E6FBC095B73D6">
|
|||
|
<mods:roleTerm id="7BC04FB913BC67F298B5B4FF6104FBEF">Author</mods:roleTerm>
|
|||
|
</mods:role>
|
|||
|
<mods:namePart id="0F0295B68A01AC13AE0002195678B95E">Yu, Bing</mods:namePart>
|
|||
|
</mods:name>
|
|||
|
<mods:name id="276FCD686641DA08D41C1A77943B742A" type="personal">
|
|||
|
<mods:role id="0BB56CB9BCEA31A893B87D06E06E127F">
|
|||
|
<mods:roleTerm id="B474AD123C75E8D1730544830F8FA0FE">Author</mods:roleTerm>
|
|||
|
</mods:role>
|
|||
|
<mods:namePart id="1F608056A9B9E37F251E27A63E978705">Zhao, Junwei</mods:namePart>
|
|||
|
</mods:name>
|
|||
|
<mods:name id="E018B1CC72943B01121ED7C1BDD89E52" type="personal">
|
|||
|
<mods:role id="A88E977CBC022ECB668B8A8A273EBD8D">
|
|||
|
<mods:roleTerm id="1633EB0635D4358C5FBF921113B4E587">Author</mods:roleTerm>
|
|||
|
</mods:role>
|
|||
|
<mods:namePart id="CC519AE94B7B497DBA768427C4E2A949">Guo, Xiaowei</mods:namePart>
|
|||
|
</mods:name>
|
|||
|
<mods:name id="C73AA7CBFEA63723FFBC98B9E18F993B" type="personal">
|
|||
|
<mods:role id="DF306B3BD5ABA9E3EBC394E014417202">
|
|||
|
<mods:roleTerm id="A544F7E7CCFCEE345175CEA5F5008FD5">Author</mods:roleTerm>
|
|||
|
</mods:role>
|
|||
|
<mods:namePart id="1F7F9D642818E549ACC793C12842AF6E">Shen, Yue</mods:namePart>
|
|||
|
</mods:name>
|
|||
|
<mods:name id="6D08FBE553B272730D1083D4067455D6" type="personal">
|
|||
|
<mods:role id="063B7E84C817BEA820013CD970A650B8">
|
|||
|
<mods:roleTerm id="1FC68504FFFC0AE1ECED0EDFB036A0E8">Author</mods:roleTerm>
|
|||
|
</mods:role>
|
|||
|
<mods:namePart id="B34C0028252F6E493F874A36609FC95A">Wang, Xiangjing</mods:namePart>
|
|||
|
</mods:name>
|
|||
|
<mods:name id="D328C60209F8C95AD84B21AC6BBFECB7" type="personal">
|
|||
|
<mods:role id="3A416DE663076B7A3826088612285C36">
|
|||
|
<mods:roleTerm id="7C1A15CDFB4564A64425EA42D2663A89">Author</mods:roleTerm>
|
|||
|
</mods:role>
|
|||
|
<mods:namePart id="D4810D67C7EE41400D349862C3409DEC">Xiang, Wensheng</mods:namePart>
|
|||
|
</mods:name>
|
|||
|
<mods:typeOfResource id="5992051E58B9FA11BF3C50C09E5E2CA2">text</mods:typeOfResource>
|
|||
|
<mods:relatedItem id="3DED09CD1CFF370E1A1C4D3349EC8783" type="host">
|
|||
|
<mods:titleInfo id="E44F47F05C269F80DE5DE37A2907F65F">
|
|||
|
<mods:title id="C0F74B838CC5D6834697DAC3DC1DB248">International Journal of Systematic and Evolutionary Microbiology</mods:title>
|
|||
|
</mods:titleInfo>
|
|||
|
<mods:part id="688533E4EB32EF15FDD942386395DA22">
|
|||
|
<mods:date id="B72E1D6ACD88972402A0426DC85895F8">2020</mods:date>
|
|||
|
<mods:detail id="AE89D47F3847F54A8D28199B870F2DFB" type="pubDate">
|
|||
|
<mods:number id="833EC071A42139275F14B0F6FC41E22D">2019-10-31</mods:number>
|
|||
|
</mods:detail>
|
|||
|
<mods:detail id="5766D654BA942A9BD9CEFFA4F8972017" type="volume">
|
|||
|
<mods:number id="49624E8F0C659835D80EBE0575F04C0F">70</mods:number>
|
|||
|
</mods:detail>
|
|||
|
<mods:detail id="D26ECA0F6A2161AD8E6BC2631F12B3F1" type="issue">
|
|||
|
<mods:number id="EB4C8E1D9429FF37A5F0BE3FFD206947">2</mods:number>
|
|||
|
</mods:detail>
|
|||
|
<mods:extent id="10B580626CFED2FE5B02F9C2271DB14A" unit="page">
|
|||
|
<mods:start id="0C7E9698B5CF4626AA28190EC12E7139">766</mods:start>
|
|||
|
<mods:end id="5B8E7FDDA279AF147B72ED7EF2587DE4">772</mods:end>
|
|||
|
</mods:extent>
|
|||
|
</mods:part>
|
|||
|
</mods:relatedItem>
|
|||
|
<mods:classification id="242067C83F7642E04C9DD304B8F0FD7F">journal article</mods:classification>
|
|||
|
<mods:identifier id="F2EFD59DB979E0351125203CAF031AFF" type="DOI">10.1099/ijsem.0.003819</mods:identifier>
|
|||
|
<mods:identifier id="E13BD44613AE55FDDEE1BDE4E15C22AB" type="GBIF-Dataset">99097115-9153-4db8-ba4c-7401c7426c6e</mods:identifier>
|
|||
|
<mods:identifier id="58D0C1EFBEDAE49E84F210C7D4F6BF9C" type="ISSN">1466-5034</mods:identifier>
|
|||
|
<mods:identifier id="6675606CD0CE1CAB5A04FF54B8067A4D" type="Zenodo-Dep">3745034</mods:identifier>
|
|||
|
</mods:mods>
|
|||
|
<treatment id="C54587BDFFB5B172FFC8F53EE09EFC0C" ID-DOI="http://doi.org/10.5281/zenodo.3809593" ID-GBIF-Taxon="163540103" ID-Zenodo-Dep="3809593" LSID="urn:lsid:plazi:treatment:C54587BDFFB5B172FFC8F53EE09EFC0C" httpUri="http://treatment.plazi.org/id/C54587BDFFB5B172FFC8F53EE09EFC0C" lastPageNumber="771" pageId="5" pageNumber="771">
|
|||
|
<subSubSection id="05F66520FFB5B172FFC8F53EE5C7FA4A" pageId="5" pageNumber="771" type="nomenclature">
|
|||
|
<paragraph id="4D5336ABFFB5B172FFC8F53EE5C7FA4A" blockId="5.[121,742,1347,1413]" pageId="5" pageNumber="771">
|
|||
|
<heading id="161B81C7FFB5B172FFC8F53EE5C7FA4A" allCaps="true" bold="true" centered="true" fontSize="12" level="2" pageId="5" pageNumber="771" reason="3">
|
|||
|
<emphasis id="7F98EAB9FFB5B172FFC8F53EE5C7FA4A" bold="true" pageId="5" pageNumber="771">
|
|||
|
DESCRIPTION OF
|
|||
|
<taxonomicName id="8AEC4D28FFB5B172FEC3F53EE7CCFAAF" box="[370,742,1347,1376]" class="Actinobacteridae" family="Thermomonosporaceae" genus="Actinomadura" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="5" pageNumber="771" phylum="Actinobacteria" rank="species" species="harenae" status="sp. nov.">
|
|||
|
<emphasis id="7F98EAB9FFB5B172FEC3F53EE7CCFAAF" bold="true" box="[370,742,1347,1376]" italics="true" pageId="5" pageNumber="771">ACTINOMADURA HARENAE</emphasis>
|
|||
|
</taxonomicName>
|
|||
|
<taxonomicNameLabel id="64AB57C2FFB5B172FFC8F515E5C7FA4A" box="[121,237,1384,1413]" pageId="5" pageNumber="771">SP. NOV.</taxonomicNameLabel>
|
|||
|
</emphasis>
|
|||
|
</heading>
|
|||
|
</paragraph>
|
|||
|
</subSubSection>
|
|||
|
<subSubSection id="05F66520FFB5B172FFC8F5E8E6EDFD72" pageId="5" pageNumber="771" type="description">
|
|||
|
<paragraph id="4D5336ABFFB5B172FFC8F5E8E7D2FA62" blockId="5.[121,760,1427,1453]" box="[121,760,1427,1453]" pageId="5" pageNumber="771">
|
|||
|
<taxonomicName id="8AEC4D28FFB5B172FFC8F5E8E442FA62" box="[121,360,1429,1453]" class="Actinobacteridae" family="Thermomonosporaceae" genus="Actinomadura" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="5" pageNumber="771" phylum="Actinobacteria" rank="species" species="harenae">
|
|||
|
<emphasis id="7F98EAB9FFB5B172FFC8F5E8E442FA62" box="[121,360,1429,1453]" italics="true" pageId="5" pageNumber="771">Actinomadura harenae</emphasis>
|
|||
|
</taxonomicName>
|
|||
|
(ha.re′ nae. L. gen. n.
|
|||
|
<taxonomicName id="8AEC4D28FFB5B172FDF5F5E8E7BDFA62" box="[580,663,1429,1453]" class="Actinobacteridae" family="Thermomonosporaceae" genus="Actinomadura" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="5" pageNumber="771" phylum="Actinobacteria" rank="species" species="harenae">
|
|||
|
<emphasis id="7F98EAB9FFB5B172FDF5F5E8E7BDFA62" box="[580,663,1429,1453]" italics="true" pageId="5" pageNumber="771">harenae</emphasis>
|
|||
|
</taxonomicName>
|
|||
|
of sand).
|
|||
|
</paragraph>
|
|||
|
<paragraph id="4D5336ABFFB5B172FFC8F5BFE6EDFD72" blockId="5.[121,760,1474,1958]" lastBlockId="5.[828,1467,185,702]" pageId="5" pageNumber="771">
|
|||
|
The cells of the strain are found to be Gram-positive and aerobic. White aerial mycelium is produced abundantly and differentiates into flexuous or straight spore chains consisted of cylindrical spores (0.4–0.6×0.8–1.0 µm), the spore surface is rough on ISP 3 medium. Good growth on ISP 1 agar, ISP 2 agar, ISP 3 agar, ISP 6 agar, ISP 7 agar, NA and BA media; moderate growth on ISP 4 agar; and poor growth on ISP 5 agar and CA media. The colony colours vary from brilliant yellow to grey-green yellow on agar media and the strain produces moderate olive brown soluble pigment on ISP 7 medium. Strain NEAU-Ht49
|
|||
|
<superScript id="BA999BE3FFB5B172FE1CF68EE49DF8CE" attach="left" box="[429,439,1779,1793]" fontSize="6" pageId="5" pageNumber="771">T</superScript>
|
|||
|
grows at 10–45 °C (optimum, 28 °C), pH 5–10 (pH 7) and NaCl tolerance of 0–3% (0 %). Positive for decomposition of cellulose, hydrolysis of aesculin and Tweens (40 and 80) and production of urease, but negative for hydrolysis of starch and Tween 20, liquefaction of gelatin, peptonization and coagulation of milk, production of H
|
|||
|
<subScript id="D16834EEFFB5B172FCE1F0B5E67DFF19" attach="both" box="[848,855,200,214]" fontSize="6" pageId="5" pageNumber="771">2</subScript>
|
|||
|
S, and reduction of nitrate. Dulcitol, D-fructose, D-glucose, meso-inositol, maltose, D-mannitol, D-mannose, L-rhamnose and sucrose are utilized as sole carbon sources, but not L-arabinose, D-galactose, lactose, raffinose, D-ribose, D-sorbitol or D-xylose. L-Alanine, L-arginine, L-asparagine, L-aspartic acid, L-glutamic acid, L-glutamine, glycine, L-proline, L-serine, L-threonine and L-tyrosine are utilized as sole nitrogen sources, but not creatine. The diagnostic diamino acid of the cell wall is meso-diaminopimelic acid. Whole-cell sugars contain glucose, madurose, mannose and ribose. The polar lipid profile consists of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositolmannoside and two unidentified lipids. The menaquinones are MK-9(H
|
|||
|
<subScript id="D16834EEFFB5B172FB3DF225E1B9FDA9" attach="left" box="[1164,1171,600,614]" fontSize="6" pageId="5" pageNumber="771">6</subScript>
|
|||
|
), MK-9(H
|
|||
|
<subScript id="D16834EEFFB5B172FAB5F225E021FDA9" attach="left" box="[1284,1291,600,614]" fontSize="6" pageId="5" pageNumber="771">4</subScript>
|
|||
|
) and MK-9(H
|
|||
|
<subScript id="D16834EEFFB5B172FA15F225E081FDA9" attach="left" box="[1444,1451,600,614]" fontSize="6" pageId="5" pageNumber="771">8</subScript>
|
|||
|
). Major fatty acids are C
|
|||
|
<subScript id="D16834EEFFB5B172FB81F20AE160FD4A" attach="left" box="[1072,1098,631,645]" fontSize="6" pageId="5" pageNumber="771">16:0</subScript>
|
|||
|
, C
|
|||
|
<subScript id="D16834EEFFB5B172FBDBF20AE1AEFD4A" attach="both" box="[1130,1156,631,645]" fontSize="6" pageId="5" pageNumber="771">18:1</subScript>
|
|||
|
ω9
|
|||
|
<emphasis id="7F98EAB9FFB5B172FB15F214E184FD4F" box="[1188,1198,617,640]" italics="true" pageId="5" pageNumber="771">c</emphasis>
|
|||
|
, 10-methyl C
|
|||
|
<subScript id="D16834EEFFB5B172FAF0F20AE076FD4A" attach="left" box="[1345,1372,631,645]" fontSize="6" pageId="5" pageNumber="771">18:0</subScript>
|
|||
|
and iso- C
|
|||
|
<subScript id="D16834EEFFB5B172FCFCF2EBE642FD6B" attach="left" box="[845,872,662,676]" fontSize="6" pageId="5" pageNumber="771">16:0</subScript>
|
|||
|
(>8%). The G+C content of the DNA of the
|
|||
|
<typeStatus id="92578809FFB5B172FAF8F2FAE05DFD50" box="[1353,1399,647,671]" pageId="5" pageNumber="771">type</typeStatus>
|
|||
|
strain is 72.1 mol%.
|
|||
|
</paragraph>
|
|||
|
</subSubSection>
|
|||
|
<subSubSection id="05F66520FFB5B172FC8DF2AEE09EFC0C" pageId="5" pageNumber="771" type="materials_examined">
|
|||
|
<paragraph id="4D5336ABFFB5B172FC8DF2AEE09EFC0C" blockId="5.[828,1467,721,963]" pageId="5" pageNumber="771">
|
|||
|
<materialsCitation id="FD843CF6FFB5B172FC8DF2AEE09AFC0C" ID-GBIF-Occurrence="2597464799" country="China" county="The" location="Wuzhizhou island" municipality="GenBank" pageId="5" pageNumber="771" specimenCount="1" stateProvince="Hainan Province" typeStatus="type">
|
|||
|
The
|
|||
|
<typeStatus id="92578809FFB5B172FCDCF2A9E6B6FD23" box="[877,924,724,748]" pageId="5" pageNumber="771">type</typeStatus>
|
|||
|
strain is NEAU-Ht49
|
|||
|
<superScript id="BA999BE3FFB5B172FB3EF2ACE1B3FD10" attach="left" box="[1167,1177,721,735]" fontSize="6" pageId="5" pageNumber="771">T</superScript>
|
|||
|
(=CGMCC 4.7499
|
|||
|
<superScript id="BA999BE3FFB5B172FADFF2ACE052FD10" attach="right" box="[1390,1400,721,735]" fontSize="6" pageId="5" pageNumber="771">T</superScript>
|
|||
|
=JCM 32659
|
|||
|
<superScript id="BA999BE3FFB5B172FCCDF28DE6ACFD31" attach="none" box="[892,902,752,766]" fontSize="6" pageId="5" pageNumber="771">T</superScript>
|
|||
|
), isolated from sea sand collected from
|
|||
|
<location id="48336070FFB5B172FA8FF28FE656FCE6" LSID="urn:lsid:plazi:treatment:C54587BDFFB5B172FFC8F53EE09EFC0C:48336070FFB5B172FA8FF28FE656FCE6" country="China" county="The" municipality="GenBank" name="Wuzhizhou island" pageId="5" pageNumber="771" stateProvince="Hainan Province">Wuzhizhou island</location>
|
|||
|
in
|
|||
|
<location id="48336070FFB5B172FC2EF36CE6F5FCE6" LSID="urn:lsid:plazi:treatment:C54587BDFFB5B172FFC8F53EE09EFC0C:48336070FFB5B172FC2EF36CE6F5FCE6" box="[927,991,785,809]" country="China" county="The" municipality="GenBank" name="Sanya" pageId="5" pageNumber="771" stateProvince="Hainan Province">Sanya</location>
|
|||
|
,
|
|||
|
<collectingRegion id="8F28F849FFB5B172FC58F36CE1B5FCE6" box="[1001,1183,785,809]" country="China" name="Hainan" pageId="5" pageNumber="771">Hainan Province</collectingRegion>
|
|||
|
, PR
|
|||
|
<collectingCountry id="35FB763BFFB5B172FB61F36CE03EFCE6" box="[1232,1300,785,809]" name="China" pageId="5" pageNumber="771">China</collectingCountry>
|
|||
|
. The GenBank/ EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain NEAU-Ht49
|
|||
|
<superScript id="BA999BE3FFB5B172FB3FF331E1B2FC95" attach="left" box="[1166,1176,844,858]" fontSize="6" pageId="5" pageNumber="771">T</superScript>
|
|||
|
is
|
|||
|
<accessionNumber id="52BFAB48FFB5B172FB08F332E018FCA8" box="[1209,1330,847,871]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MK203829" pageId="5" pageNumber="771">MK203829</accessionNumber>
|
|||
|
. This Whole Genome Shotgun project has been deposited at DDBJ/ENA/ GenBank under the accession number RFFG00000000. The version described in this paper is version RFFG01000000.1
|
|||
|
</materialsCitation>
|
|||
|
.
|
|||
|
</paragraph>
|
|||
|
</subSubSection>
|
|||
|
</treatment>
|
|||
|
</document>
|