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209 lines
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<document id="1342F68880D399EBCB6C559EBB47E7F0" ID-DOI="10.1099/ijsem.0.004107" ID-ISSN="1466-5034" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644597203828" checkinUser="felipe" docAuthor="Zheng, Jinshui, Wittouck, Stijn, Salvetti, Elisa, Franz, Charles M. A. P., Harris, Hugh M. B., Mattarelli, Paola, O’Toole, Paul W., Pot, Bruno, Vandamme, Peter, Walter, Jens, Watanabe, Koichi, Wuyts, Sander, Felis, Giovanna E., Gänzle, Michael G. & Lebeer, Sarah" docDate="2020" docId="0389878AFF982164D94EFA1EFD7E65C4" docLanguage="en" docName="IntJSystEvolMicrobiol.70.4.2782-2858.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (4)" docSource="http://dx.doi.org/10.1099/ijsem.0.004107" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Companilactobacillus allii Zheng, Wittouck, Salvetti, Franz, Harris, Mattarelli, O’Toole, Pot, Vandamme, Walter, Watanabe, Wuyts, Felis, Gänzle & Lebeer, 2020, COMB. NOV." docType="treatment" docVersion="4" lastPageNumber="2803" masterDocId="FFB0FFF2FF8D2171D937FF96FFAF6267" masterDocTitle="A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae" masterLastPageNumber="2858" masterPageNumber="2782" pageNumber="2803" updateTime="1699295455673" updateUser="plazi">
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<mods:title id="33584FA0BC8BFFD02EB427CBDB227514">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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<mods:namePart id="C39458A985A7F0245647EC9FE311B03A">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="36CED3E965F8E99A76CD9D313A8AB61A">Wittouck, Stijn</mods:namePart>
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<mods:namePart id="C5D25110ABA6DCC9F3694717274E91F4">Salvetti, Elisa</mods:namePart>
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<mods:namePart id="528B0616D6A729D12E1973FE90D5743F">Franz, Charles M. A. P.</mods:namePart>
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<mods:namePart id="B2CCEFD2D651037E7C9A79DE44F9DE72">Harris, Hugh M. B.</mods:namePart>
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<mods:namePart id="840A479577ECAF7A364970387DAA7BCC">Mattarelli, Paola</mods:namePart>
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<mods:namePart id="0825CDC4864723725B054A4C27A32720">O’Toole, Paul W.</mods:namePart>
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<mods:namePart id="8B2669731A457F41531196586A199D9F">Pot, Bruno</mods:namePart>
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<mods:namePart id="D2019CFE9C73E41A47F761CDEF6D5EA0">Vandamme, Peter</mods:namePart>
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<mods:namePart id="12584FA1F79828B29668C28D6EE0386D">Walter, Jens</mods:namePart>
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<mods:namePart id="F33D6C167C48EA6BD9208522F742020C">Watanabe, Koichi</mods:namePart>
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<mods:namePart id="16F6D42EF5737B7D0CC77FFB7AA80206">Wuyts, Sander</mods:namePart>
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<mods:namePart id="ADB929686DFE2E204CD30BA41B1A8234">Felis, Giovanna E.</mods:namePart>
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<mods:namePart id="9175EA8D274D7CB6A96A1FFDB848108B">Gänzle, Michael G.</mods:namePart>
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<mods:namePart id="6A90664D40D98EF69643967D3E39ECE2">Lebeer, Sarah</mods:namePart>
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<mods:title id="5DAA02D190C49C14728D1162350123BB">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="8BCD2E23A32B203B4380F1CB1E3A0E06">
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<mods:date id="2C9AE1D4ACE1AC07373FA4851CFDFB28">2020</mods:date>
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<mods:number id="C25D5A602D64A9EEA9C807F01170D613">2020-04-01</mods:number>
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<mods:number id="6305ACEF27DE2932EDB077ACC6C32E27">4</mods:number>
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<mods:start id="C458EED3B383E1A17A556BD0E0AD5AA6">2782</mods:start>
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<mods:url id="72E31CB0896A0C40C0617818A1FDC46A">http://dx.doi.org/10.1099/ijsem.0.004107</mods:url>
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<mods:identifier id="FCD67BFB174C08CBCBD6025732681E79" type="ISSN">1466-5034</mods:identifier>
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<treatment id="0389878AFF982164D94EFA1EFD7E65C4" ID-DOI="http://doi.org/10.5281/zenodo.6309596" ID-Zenodo-Dep="6309596" LSID="urn:lsid:plazi:treatment:0389878AFF982164D94EFA1EFD7E65C4" httpUri="http://treatment.plazi.org/id/0389878AFF982164D94EFA1EFD7E65C4" lastPageNumber="2803" pageId="21" pageNumber="2803">
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<subSubSection id="C33A6517FF982164D94EFA1EFEC167AD" pageId="21" pageNumber="2803" type="nomenclature">
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<paragraph id="8B9F369CFF982164D94EFA1EFEC167AD" blockId="21.[121,760,1416,1955]" pageId="21" pageNumber="2803">
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<heading id="D0D781F0FF982164D94EFA1EFEC167AD" allCaps="true" bold="true" fontSize="12" level="2" pageId="21" pageNumber="2803" reason="3">
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<emphasis id="B954EA8EFF982164D94EFA1EFEC167AD" bold="true" pageId="21" pageNumber="2803">
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DESCRIPTION OF
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<taxonomicName id="4C204D1FFF982164D845FA1EFF6F67AD" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Companilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="21" pageNumber="2803" phylum="Firmicutes" rank="species" species="allii" status="comb. nov.">
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<emphasis id="B954EA8EFF982164D845FA1EFF6F67AD" bold="true" italics="true" pageId="21" pageNumber="2803">COMPANILACTOBACILLUS ALLII</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A26757F5FF982164D9FEFA3BFEC167AD" box="[201,366,1453,1482]" pageId="21" pageNumber="2803" rank="species">COMB. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FF982164D94EFA4EFD0B6449" pageId="21" pageNumber="2803" type="etymology">
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<paragraph id="8B9F369CFF982164D94EFA4EFD0B6449" blockId="21.[121,760,1416,1955]" pageId="21" pageNumber="2803">
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<taxonomicName id="4C204D1FFF982164D94EFA4EFE246797" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[121,395,1496,1520]" class="Bacilli" family="Lactobacillaceae" genus="Companilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="21" pageNumber="2803" phylum="Firmicutes" rank="species" species="allii">
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<emphasis id="B954EA8EFF982164D94EFA4EFE246797" box="[121,395,1496,1520]" italics="true" pageId="21" pageNumber="2803">Companilactobacillus allii</emphasis>
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</taxonomicName>
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(al’li.i. L. gen. n.
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<taxonomicName id="4C204D1FFF982164DB7CFA4EFDDC6797" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[587,627,1496,1520]" class="Bacilli" family="Lactobacillaceae" genus="Companilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="21" pageNumber="2803" phylum="Firmicutes" rank="species" species="allii">
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<emphasis id="B954EA8EFF982164DB7CFA4EFDDC6797" box="[587,627,1496,1520]" italics="true" pageId="21" pageNumber="2803">allii</emphasis>
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</taxonomicName>
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of Egyptian onions (
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<emphasis id="B954EA8EFF982164D9E4FA61FE216468" box="[211,398,1527,1551]" italics="true" pageId="21" pageNumber="2803">Allium proliferum</emphasis>
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), the source of fermented onions, pa-kimchi, from which the
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<typeStatus id="549B883EFF982164D8AAF981FE646448" box="[413,459,1559,1583]" pageId="21" pageNumber="2803">type</typeStatus>
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strain was isolated).
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FF982164D94EF9D3FE18649F" pageId="21" pageNumber="2803" type="description">
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<paragraph id="8B9F369CFF982164D94EF9D3FD346436" blockId="21.[121,760,1416,1955]" box="[121,667,1603,1629]" pageId="21" pageNumber="2803">
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Basonym:
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<taxonomicName id="4C204D1FFF982164D9DFF9D3FDE6643A" authority="Jung et al. 2017" authorityName="Jung" authorityYear="2017" box="[232,585,1605,1629]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="21" pageNumber="2803" phylum="Firmicutes" rank="species" species="allii">
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<emphasis id="B954EA8EFF982164D9DFF9D3FE30643A" box="[232,415,1605,1629]" italics="true" pageId="21" pageNumber="2803">Lactobacillus allii</emphasis>
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Jung
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<emphasis id="B954EA8EFF982164D8EBF9D3FDA8643A" box="[476,519,1605,1629]" italics="true" pageId="21" pageNumber="2803">et al</emphasis>
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. 2017
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</taxonomicName>
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, 4939
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<superScript id="7C559BD4FF982164DBB0F9D5FD346436" attach="right" box="[647,667,1603,1617]" fontSize="6" pageId="21" pageNumber="2803">VP</superScript>
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|
|
</paragraph>
|
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|
|
<paragraph id="8B9F369CFF982164D94EF9E5FD0864AD" blockId="21.[121,760,1416,1955]" pageId="21" pageNumber="2803">
|
|||
|
|
Growth is observed at 25 and 37 °C; hexoses and disaccharides but not pentoses are fermented [
|
|||
|
|
<bibRefCitation id="EFB14B6DFF982164DB3DF905FD9864CC" author="Jung MY & Lee SH & Lee M & Song JH & Chang JY" box="[522,567,1683,1707]" pageId="21" pageNumber="2803" pagination="4936 - 4942" refId="ref64679" refString="117. Jung MY, Lee SH, Lee M, Song JH, Chang JY. Lactobacillus allii sp. nov. isolated from scallion kimchi. Int J Syst Evol Microbiol 2017; 67: 4936 - 4942." type="journal article" year="2017">117</bibRefCitation>
|
|||
|
|
]. The genome size is 2.51 Mbp. The mol% G+C content of DNA is 35.3.
|
|||
|
|
</paragraph>
|
|||
|
|
<paragraph id="8B9F369CFF982164D94EF976FE18649F" blockId="21.[121,760,1416,1955]" box="[121,439,1760,1784]" pageId="21" pageNumber="2803">Isolated from scallion kimchi.</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
<subSubSection id="C33A6517FF982164D94EF899FE7E6513" pageId="21" pageNumber="2803" type="materials_examined">
|
|||
|
|
<paragraph id="8B9F369CFF982164D94EF899FD4F6541" blockId="21.[121,760,1416,1955]" box="[121,736,1805,1831]" pageId="21" pageNumber="2803">
|
|||
|
|
<materialsCitation id="3B483CC1FF982164D94EF899FD75657C" accessionNumber="JCM 31938" box="[121,730,1805,1831]" collectionCode="T, JCM" pageId="21" pageNumber="2803" specimenCode="KCTC 21077" specimenCount="1" typeStatus="holotype">
|
|||
|
|
The
|
|||
|
|
<typeStatus id="549B883EFF982164D990F899FF7A6540" box="[167,213,1807,1831]" pageId="21" pageNumber="2803">type</typeStatus>
|
|||
|
|
strain is WiKim39
|
|||
|
|
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|||
|
|
<collectionCode id="ED31AE59FF982164D8AAF89BFE08657C" box="[413,423,1805,1819]" name="Tavera, Department of Geology and Geophysics" pageId="21" pageNumber="2803">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<specimenCode id="DB869EE7FF982164D883F899FDEE6540" box="[436,577,1807,1831]" collectionCode="KCTC" country="South Korea" httpUri="http://grbio.org/cool/2inw-p49s" name="Korean Collection for Type Cultures" pageId="21" pageNumber="2803">KCTC 21077</specimenCode>
|
|||
|
|
<superScript id="7C559BD4FF982164DB76F89BFDE4657C" attach="none" box="[577,587,1805,1819]" fontSize="6" pageId="21" pageNumber="2803">
|
|||
|
|
<collectionCode id="ED31AE59FF982164DB76F89BFDE4657C" box="[577,587,1805,1819]" name="Tavera, Department of Geology and Geophysics" pageId="21" pageNumber="2803">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<collectionCode id="ED31AE59FF982164DB6FF899FD236540" box="[600,652,1807,1831]" country="Japan" httpUri="http://grbio.org/cool/iyky-md37" name="Japan Collection of Microorganisms" pageId="21" pageNumber="2803">JCM</collectionCode>
|
|||
|
|
31938
|
|||
|
|
<superScript id="7C559BD4FF982164DBE5F89BFD75657C" attach="none" box="[722,730,1805,1819]" fontSize="6" pageId="21" pageNumber="2803">
|
|||
|
|
<collectionCode id="ED31AE59FF982164DBE5F89BFD75657C" box="[722,730,1805,1819]" name="Tavera, Department of Geology and Geophysics" pageId="21" pageNumber="2803">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
</materialsCitation>
|
|||
|
|
.
|
|||
|
|
</paragraph>
|
|||
|
|
<paragraph id="8B9F369CFF982164D94EF8ABFE7E6513" blockId="21.[121,760,1416,1955]" pageId="21" pageNumber="2803">
|
|||
|
|
Genome sequence accession numbers:
|
|||
|
|
<accessionNumber id="9473AB7FFF982164DB2BF8ABFD256532" box="[540,650,1853,1877]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/CP019323" pageId="21" pageNumber="2803">CP019323</accessionNumber>
|
|||
|
|
(chromosome) and
|
|||
|
|
<accessionNumber id="9473AB7FFF982164D9D8F8CAFEF36513" box="[239,348,1884,1908]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/CP019324" pageId="21" pageNumber="2803">CP019324</accessionNumber>
|
|||
|
|
(plasmid).
|
|||
|
|
</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
<subSubSection id="C33A6517FF982164D94EF81DFD7E65C4" box="[121,721,1931,1955]" pageId="21" pageNumber="2803" type="description">
|
|||
|
|
<paragraph id="8B9F369CFF982164D94EF81DFD7E65C4" blockId="21.[121,760,1416,1955]" box="[121,721,1931,1955]" pageId="21" pageNumber="2803">16S RNA gene sequence accession number: NR_159082.</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
</treatment>
|
|||
|
|
</document>
|