175 lines
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175 lines
12 KiB
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<document ID-DOI="10.1093/gbe/evaa212" ID-GBIF-Dataset="f572993a-25e4-44bf-80f8-2b9075a81a29" ID-PMC="PMC7846144" ID-PubMed="33022031" ID-Zenodo-Dep="4561628" approvalRequired="5" approvalRequired_for_document="1" approvalRequired_for_textStreams="4" checkinTime="1614243439518" checkinUser="donat" docAuthor="Chambers, James, Sparks, Natalie, Sydney, Natashia, Livingstone, Paul G, Cookson, Alan R & Whitworth, David E" docDate="2020" docId="03A729036475D730FF37FAEEFAAC0A41" docLanguage="en" docName="genomeBioEvol.evaa212.pdf" docOrigin="Genome Biology and Evolution 12 (12)" docSource="http://dx.doi.org/10.1093/gbe/evaa212" docTitle="Myxococcus eversor Chambers & Sparks & Sydney & Livingstone & Cookson & Whitworth 2020, sp. nov." docType="treatment" docVersion="6" lastPageNumber="2300" masterDocId="FF9E517B647ED73BFFBDFFC1FFC10B09" masterDocTitle="Comparative Genomics and Pan-Genomics of the Myxococcaceae, including a Description of Five Novel Species: Myxococcus eversor sp. nov., Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis sp. nov., Myxococcus vastator sp. nov., Pyxidicoccus caerfyrddinensis sp. nov., and Pyxidicoccus trucidator sp. nov." masterLastPageNumber="2302" masterPageNumber="2289" pageNumber="2300" updateTime="1668128921393" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0" zenodo-license-treatments="CC0-1.0">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Comparative Genomics and Pan-Genomics of the Myxococcaceae, including a Description of Five Novel Species: Myxococcus eversor sp. nov., Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis sp. nov., Myxococcus vastator sp. nov., Pyxidicoccus caerfyrddinensis sp. nov., and Pyxidicoccus trucidator sp. nov.</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Chambers, James</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Sparks, Natalie</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Sydney, Natashia</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Livingstone, Paul G</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Cookson, Alan R</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Whitworth, David E</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>Genome Biology and Evolution</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2020</mods:date>
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<mods:detail type="pubDate">
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<mods:number>2020-10-06</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>12</mods:number>
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</mods:detail>
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<mods:detail type="issue">
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<mods:number>12</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>2289</mods:start>
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<mods:end>2302</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:location>
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<mods:url>http://dx.doi.org/10.1093/gbe/evaa212</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">10.1093/gbe/evaa212</mods:identifier>
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<mods:identifier type="GBIF-Dataset">f572993a-25e4-44bf-80f8-2b9075a81a29</mods:identifier>
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<mods:identifier type="PMC">PMC7846144</mods:identifier>
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<mods:identifier type="PubMed">33022031</mods:identifier>
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<mods:identifier type="Zenodo-Dep">4561628</mods:identifier>
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</mods:mods>
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<treatment ID-DOI="http://doi.org/10.5281/zenodo.4561630" ID-GBIF-Taxon="179910679" ID-Zenodo-Dep="4561630" LSID="urn:lsid:plazi:treatment:03A729036475D730FF37FAEEFAAC0A41" httpUri="http://treatment.plazi.org/id/03A729036475D730FF37FAEEFAAC0A41" lastPageNumber="2300" pageId="11" pageNumber="2300">
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<subSubSection box="[138,449,1327,1351]" pageId="11" pageNumber="2300" type="nomenclature">
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<paragraph blockId="11.[138,449,1327,1351]" box="[138,449,1327,1351]" pageId="11" pageNumber="2300">
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<taxonomicName authority="Chambers & Sparks & Sydney & Livingstone & Cookson & Whitworth, 2020" authorityName="Chambers & Sparks & Sydney & Livingstone & Cookson & Whitworth" authorityYear="2020" box="[138,355,1327,1351]" class="Deltaproteobacteria" family="Myxococcaceae" genus="Myxococcus" kingdom="Bacteria" order="Myxococcales" pageId="11" pageNumber="2300" phylum="Proteobacteria" rank="species" species="eversor" status="sp. nov.">
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<emphasis box="[138,355,1327,1351]" italics="true" pageId="11" pageNumber="2300">Myxococcus eversor</emphasis>
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</taxonomicName>
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<taxonomicNameLabel box="[362,449,1327,1351]" pageId="11" pageNumber="2300" rank="species">sp. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="2300" type="etymology">
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<paragraph blockId="11.[138,768,1371,1906]" pageId="11" pageNumber="2300">
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<taxonomicName authorityName="Chambers & Sparks & Sydney & Livingstone & Cookson & Whitworth" authorityYear="2020" box="[138,348,1371,1394]" class="Deltaproteobacteria" family="Myxococcaceae" genus="Myxococcus" kingdom="Bacteria" order="Myxococcales" pageId="11" pageNumber="2300" phylum="Proteobacteria" rank="species" species="eversor">
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<emphasis box="[138,348,1371,1394]" italics="true" pageId="11" pageNumber="2300">Myxococcus eversor</emphasis>
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</taxonomicName>
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(e.ver’sor L. masc. n.
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<taxonomicName authorityName="Chambers & Sparks & Sydney & Livingstone & Cookson & Whitworth" authorityYear="2020" box="[601,674,1371,1394]" class="Deltaproteobacteria" family="Myxococcaceae" genus="Myxococcus" kingdom="Bacteria" order="Myxococcales" pageId="11" pageNumber="2300" phylum="Proteobacteria" rank="species" species="eversor">
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<emphasis box="[601,674,1371,1394]" italics="true" pageId="11" pageNumber="2300">eversor</emphasis>
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</taxonomicName>
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the destroyer, reflecting its destruction of prey cells).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="2300" type="description">
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<paragraph blockId="11.[138,768,1371,1906]" pageId="11" pageNumber="2300">
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Vegetative cells are Gram-negative bacilli tapering slightly at the ends, measuring
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<quantity box="[382,479,1466,1490]" metricMagnitude="-1" metricUnit="m" metricValue="6.499999999999999" metricValueMax="7.0" metricValueMin="6.0" pageId="11" pageNumber="2300" unit="m" value="0.6499999999999999" valueMax="0.7" valueMin="0.6">
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0.6–0.7
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<emphasis bold="true" box="[466,479,1466,1490]" pageId="11" pageNumber="2300">m</emphasis>
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</quantity>
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m 3.0–8.0
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<emphasis bold="true" box="[616,629,1466,1490]" pageId="11" pageNumber="2300">m</emphasis>
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m in electron micrographs. Colonies exhibit swarming motility and appear pale brown on VY-2 agar (w/v 0.5% dried baker’s yeast, 0.1% CaCl
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<subScript attach="left" box="[253,263,1573,1588]" fontSize="6" pageId="11" pageNumber="2300">2</subScript>
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2H
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<subScript attach="right" box="[300,310,1573,1588]" fontSize="6" pageId="11" pageNumber="2300">2</subScript>
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O, and 1.5% agar). Fruiting bodies are irregular spheroids, orange in color. Aerobic growth was observed at 30–40 C, at pH 5.0–9.0, and with the addition of 1–4% NaCl. Hydrolyzes arginine, esculin, gelatin,
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<emphasis box="[579,592,1659,1682]" italics="true" pageId="11" pageNumber="2300">p</emphasis>
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-nitrophenyl-
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<emphasis box="[725,739,1659,1682]" italics="true" pageId="11" pageNumber="2300">B</emphasis>
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-D-galactopyranoside, and urea. Assimilates
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<emphasis box="[601,617,1691,1714]" italics="true" pageId="11" pageNumber="2300">N</emphasis>
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-acetyl-glucosamine, adipate, arabinose, caprate, citrate, gluconate, glucose, malate, maltose, mannitol, mannose, and phenyl acetate. Cells prey with low efficiency upon
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<taxonomicName authority="TOP" authorityName="TOP" box="[617,740,1787,1810]" class="Gammaproteobacteria" family="Enterobacteriaceae" genus="Escherichia" kingdom="Bacteria" order="Enterobacteriales" pageId="11" pageNumber="2300" phylum="Proteobacteria" rank="species" species="coli">
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<emphasis box="[617,681,1787,1810]" italics="true" pageId="11" pageNumber="2300">E. coli</emphasis>
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TOP
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</taxonomicName>
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10,
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<taxonomicName authority="DSM" authorityName="DSM" box="[138,360,1819,1842]" family="Microbacteriaceae" genus="Clavibacter" kingdom="Bacteria" order="Actinomycetales" pageId="11" pageNumber="2300" phylum="Actinobacteria" rank="species" species="nebraskensis">
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<emphasis box="[138,302,1819,1842]" italics="true" pageId="11" pageNumber="2300">Cl. nebraskensis</emphasis>
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DSM
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</taxonomicName>
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7483, and
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<taxonomicName authority="DSM" authorityName="DSM" box="[482,642,1819,1842]" class="Ustilaginomycetes" family="Ustilaginaceae" genus="Ustilago" kingdom="Chromista" order="Ustilaginales" pageId="11" pageNumber="2300" phylum="Basidiomycota" rank="species" species="maydis">
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<emphasis box="[482,583,1819,1842]" italics="true" pageId="11" pageNumber="2300">U. maydis</emphasis>
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<accessionNumber box="[591,716,1819,1842]" httpUri="http://www.ncbi.nlm.nih.gov/protein/DSM14603" pageId="11" pageNumber="2300">DSM 14603</accessionNumber>
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</taxonomicName>
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.
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</paragraph>
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<paragraph blockId="11.[138,768,1371,1906]" lastBlockId="11.[828,1461,235,328]" pageId="11" pageNumber="2300">
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DNA
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<collectionCode box="[229,264,1851,1874]" country="0" name="Goucher College" pageId="11" pageNumber="2300">GC</collectionCode>
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content is 68.9 mol%. The draft genome sequence of AB053B
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<superScript attach="left" box="[344,353,1877,1892]" fontSize="6" pageId="11" pageNumber="2300">
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<collectionCode box="[344,353,1877,1892]" name="Tavera, Department of Geology and Geophysics" pageId="11" pageNumber="2300">T</collectionCode>
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</superScript>
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is available from GenBank (accession JAAIXY01).
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<subSubSection pageId="11" pageNumber="2300" type="materials_examined">
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<materialsCitation ID-GBIF-Occurrence="3042655305" collectedFrom="from soil collected" collectionCode="T, NCCB, NBRC" country="United Kingdom" latitude="52.41" location="Aberystwyth University" longLatPrecision="650" longitude="-4.08" pageId="11" pageNumber="2300" specimenCode="AB053B" specimenCount="1" typeStatus="type strain">
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The
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<typeStatus box="[1002,1113,241,264]" pageId="11" pageNumber="2300">type strain</typeStatus>
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(
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<specimenCode box="[1129,1214,241,264]" pageId="11" pageNumber="2300">AB053B</specimenCode>
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<superScript attach="left" box="[1214,1223,235,250]" fontSize="6" pageId="11" pageNumber="2300">
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<collectionCode box="[1214,1223,235,250]" pageId="11" pageNumber="2300">T</collectionCode>
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</superScript>
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<emphasis bold="true" box="[1233,1258,240,264]" pageId="11" pageNumber="2300">¼</emphasis>
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<collectionCode box="[1263,1326,241,264]" pageId="11" pageNumber="2300">NCCB</collectionCode>
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100767
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<superScript attach="left" box="[1417,1426,235,250]" fontSize="6" pageId="11" pageNumber="2300">
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<collectionCode box="[1417,1426,235,250]" pageId="11" pageNumber="2300">T</collectionCode>
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</superScript>
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<emphasis bold="true" box="[1436,1461,240,264]" pageId="11" pageNumber="2300">¼</emphasis>
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<superScript attach="none" box="[987,996,267,282]" fontSize="6" pageId="11" pageNumber="2300">
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<collectionCode box="[987,996,267,282]" pageId="11" pageNumber="2300">T</collectionCode>
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</superScript>
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<collectionCode box="[828,888,273,296]" pageId="11" pageNumber="2300">NBRC</collectionCode>
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114350) was isolated
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<collectedFrom box="[1176,1387,273,296]" pageId="11" pageNumber="2300">from soil collected</collectedFrom>
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from
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<location LSID="urn:lsid:plazi:treatment:03A729036475D730FF37FAEEFAAC0A41:8ED1CECE6475D730FC81FEF0FBED0A41" box="[828,1068,305,328]" country="United Kingdom" latitude="52.41" longLatPrecision="650" longitude="-4.08" name="Aberystwyth University" pageId="11" pageNumber="2300">Aberystwyth University</location>
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,
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<collectingCountry box="[1078,1110,305,328]" name="United Kingdom" pageId="11" pageNumber="2300">UK</collectingCountry>
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(gridref
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<geoCoordinate box="[1199,1286,305,328]" degrees="52.41" direction="north" orientation="latitude" pageId="11" pageNumber="2300" precision="555" value="52.41">52.41 N</geoCoordinate>
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<geoCoordinate box="[1293,1378,305,328]" degrees="4.08" direction="west" orientation="longitude" pageId="11" pageNumber="2300" precision="555" value="-4.08">4.08 W</geoCoordinate>
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)
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</materialsCitation>
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.
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</subSubSection>
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</paragraph>
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</subSubSection>
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</treatment>
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</document>
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