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<mods:title id="762E0C865A06B6FD2AC6251B25D6C571">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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<mods:namePart id="C436DB7F16AA324D4B45F0A9D9D0780C">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="D24D9E5C9BF435BE0847FE0F3741D640">Wittouck, Stijn</mods:namePart>
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<mods:namePart id="F9254BC156D97C89601D32F3D976F760">Salvetti, Elisa</mods:namePart>
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<mods:namePart id="DA154568811B1866D9366FA5AF4FE2BC">Franz, Charles M. A. P.</mods:namePart>
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<mods:namePart id="17654BA49BA565DE3501F8C281383713">Harris, Hugh M. B.</mods:namePart>
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<mods:namePart id="F99859E51DE491A0DFDC59D3FC267301">Mattarelli, Paola</mods:namePart>
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<mods:namePart id="81B6EC39DA1F2ECF9DFD40F2C18C5E78">O’Toole, Paul W.</mods:namePart>
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<mods:namePart id="68932DC996D45E59F55BD369FC5A152D">Pot, Bruno</mods:namePart>
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<mods:namePart id="8B1E90665D0F0743D498FB56FAF33209">Vandamme, Peter</mods:namePart>
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<mods:namePart id="43A84CFEFBC7A000F6EF2E4F4E2B9BA1">Walter, Jens</mods:namePart>
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<mods:namePart id="302C4D29403608BF85172CFEED3C71A1">Watanabe, Koichi</mods:namePart>
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<mods:namePart id="E5A0FDA36334F6C173323BCADEC69B44">Wuyts, Sander</mods:namePart>
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<mods:namePart id="103689D52B9070A81BB75473E6C376C1">Felis, Giovanna E.</mods:namePart>
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<mods:namePart id="80AC0050456ADBCA9759D0B8B98629C1">Gänzle, Michael G.</mods:namePart>
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<mods:namePart id="A697E0554E901A8351F30DF733B212CF">Lebeer, Sarah</mods:namePart>
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<mods:title id="F7A6905217D43B885C7289D21734DBC8">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="1E244FB5EF27A53626B5F953192AF2DC">
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<mods:date id="BC418A12950FE78BAEEF43F4991580D7">2020</mods:date>
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<mods:number id="C3F33D699B663A38FBBEF7CACD3FAD52">2020-04-15</mods:number>
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<mods:number id="A4B75B8DFED177EDBA30933579C21596">70</mods:number>
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<mods:start id="F74BA3EC28314FECF4A7CFEAAD45034B">2782</mods:start>
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<mods:end id="20E36497FC75DB6570D578B2141DDF2C">2858</mods:end>
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<mods:classification id="DD36FA310E91F7CF0C512D7D1986A5D1">journal article</mods:classification>
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<mods:identifier id="47939080DD9F07EB382553D772F1142A" type="CLB-Dataset">7136</mods:identifier>
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<mods:identifier id="477640E64236564C14CBD66248EFA23A" type="DOI">10.1099/ijsem.0.004107</mods:identifier>
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<mods:identifier id="2F4B6CCC0A91BEED577B3B4E46C8B118" type="GBIF-Dataset">c650e745-85a1-48ca-b29a-b1714f644bae</mods:identifier>
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<treatment id="03A8D903D210025EFFD0FC3951D334BD" ID-DOI="http://doi.org/10.5281/zenodo.4728507" ID-GBIF-Taxon="181761737" ID-Zenodo-Dep="4728507" LSID="urn:lsid:plazi:treatment:03A8D903D210025EFFD0FC3951D334BD" httpUri="http://treatment.plazi.org/id/03A8D903D210025EFFD0FC3951D334BD" lastPageNumber="2813" pageId="31" pageNumber="2813">
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<subSubSection id="C31B3B9ED210025EFFD0FC3950C4370E" pageId="31" pageNumber="2813" type="nomenclature">
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<paragraph id="8BBE6815D210025EFFD0FC3950C4370E" blockId="31.[121,760,973,1139]" pageId="31" pageNumber="2813">
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<heading id="D0F6DF79D210025EFFD0FC3950C4370E" allCaps="true" bold="true" fontSize="12" level="3" pageId="31" pageNumber="2813" reason="0">
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<emphasis id="B975B407D210025EFFD0FC3950C4370E" bold="true" pageId="31" pageNumber="2813">
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DESCRIPTIONOF
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<taxonomicName id="4C011396D210025EFEDBFC39501B370E" authority="PARACASEI" authorityName="PARACASEI SUBSP. PARACASEI" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Lacticaseibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="paracasei" status="comb. nov.">
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<emphasis id="B975B407D210025EFEDBFC39501B370E" bold="true" italics="true" pageId="31" pageNumber="2813">LACTICASEIBACILLUS PARACASEI</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A246097CD210025EFE88FC0750C4370E" box="[289,454,1011,1040]" pageId="31" pageNumber="2813" rank="species">COMB. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C31B3B9ED210025EFFD0FBE95021351A" pageId="31" pageNumber="2813" type="discussion">
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<paragraph id="8BBE6815D210025EFFD0FBE950C7376D" blockId="31.[121,760,973,1139]" pageId="31" pageNumber="2813">
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<taxonomicName id="4C011396D210025EFFD0FBE95092372A" box="[121,400,1053,1077]" class="Bacilli" family="Lactobacillaceae" genus="Lacticaseibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="paracasei">
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<emphasis id="B975B407D210025EFFD0FBE95092372A" box="[121,400,1053,1077]" italics="true" pageId="31" pageNumber="2813">Lacticaseibacillus paracasei</emphasis>
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</taxonomicName>
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(pa.ra.ca’se.i. Gr. prep.
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<emphasis id="B975B407D210025EFDD5FBE953A9372A" box="[636,683,1053,1076]" italics="true" pageId="31" pageNumber="2813">para</emphasis>
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resembling; N.L. gen. n.
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<taxonomicName id="4C011396D210025EFE9DFBC85067374D" box="[308,357,1084,1107]" class="Bacilli" family="Lactobacillaceae" genus="Streptobacterium" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="casei">
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<emphasis id="B975B407D210025EFE9DFBC85067374D" box="[308,357,1084,1107]" italics="true" pageId="31" pageNumber="2813">casei</emphasis>
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</taxonomicName>
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a species epithet; N.L. gen. n.
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<taxonomicName id="4C011396D210025EFD31FBC853FA374D" box="[664,760,1084,1107]" class="Bacilli" family="Lactobacillaceae" genus="Lacticaseibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="paracasei">
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<emphasis id="B975B407D210025EFD31FBC853FA374D" box="[664,760,1084,1107]" italics="true" pageId="31" pageNumber="2813">paracasei</emphasis>
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</taxonomicName>
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resembling
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<taxonomicName id="4C011396D210025EFF5CFBAF50B4376C" box="[245,438,1115,1139]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="casei">
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<emphasis id="B975B407D210025EFF5CFBAF50B4376C" box="[245,438,1115,1139]" italics="true" pageId="31" pageNumber="2813">Lactobacillus casei</emphasis>
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</taxonomicName>
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).
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</paragraph>
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<paragraph id="8BBE6815D210025EFFD0FB7D53E1378B" blockId="31.[121,739,1159,1185]" box="[121,739,1159,1185]" pageId="31" pageNumber="2813">
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Basonym:
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<taxonomicName id="4C011396D210025EFF41FB7D539C37BF" authority="Collins et al. 1989" authorityName="Collins" authorityYear="1989" box="[232,670,1161,1185]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="paracasei">
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<emphasis id="B975B407D210025EFF41FB7D50DB37BE" box="[232,473,1161,1185]" italics="true" pageId="31" pageNumber="2813">Lactobacillus paracasei</emphasis>
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Collins
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<emphasis id="B975B407D210025EFD98FB7D535F37BF" box="[561,605,1161,1185]" italics="true" pageId="31" pageNumber="2813">et al</emphasis>
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. 1989
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</taxonomicName>
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, 107
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<superScript id="7C74C55DD210025EFD66FB7353E1378B" attach="none" box="[719,739,1159,1173]" fontSize="6" pageId="31" pageNumber="2813">VP</superScript>
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</paragraph>
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|
<paragraph id="8BBE6815D210025EFFD0FB435021351A" blockId="31.[120,760,1207,1540]" pageId="31" pageNumber="2813">
|
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|
|
Strains of this species including strains previously referred to as
|
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|
|
<taxonomicName id="4C011396D210025EFF1DFB22500737F3" box="[180,261,1238,1261]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="casei">
|
|||
|
|
<emphasis id="B975B407D210025EFF1DFB22500737F3" box="[180,261,1238,1261]" italics="true" pageId="31" pageNumber="2813">L. casei</emphasis>
|
|||
|
|
</taxonomicName>
|
|||
|
|
<taxonomicName id="4C011396D210025EFEA5FB2250BE37F0" box="[268,444,1238,1262]" pageId="31" pageNumber="2813" rank="subSpecies" subSpecies="alactosus">subsp. alactosus</taxonomicName>
|
|||
|
|
,
|
|||
|
|
<taxonomicName id="4C011396D210025EFE62FB22531937F3" box="[459,539,1238,1261]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="casei">
|
|||
|
|
<emphasis id="B975B407D210025EFE62FB22531937F3" box="[459,539,1238,1261]" italics="true" pageId="31" pageNumber="2813">L. casei</emphasis>
|
|||
|
|
</taxonomicName>
|
|||
|
|
<taxonomicName id="4C011396D210025EFD8AFB2251BF3612" pageId="31" pageNumber="2813" rank="subSpecies" subSpecies="pseudoplantarum">subsp. pseudoplantarum</taxonomicName>
|
|||
|
|
and
|
|||
|
|
<taxonomicName id="4C011396D210025EFF5BFB0150E43612" authorityName="Abo-Elnaga & Kandler" authorityYear="1965" box="[242,486,1268,1292]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="subSpecies" species="casei" subSpecies="tolerans">
|
|||
|
|
<emphasis id="B975B407D210025EFF5BFB0150433612" box="[242,321,1269,1292]" italics="true" pageId="31" pageNumber="2813">L. casei</emphasis>
|
|||
|
|
subsp.
|
|||
|
|
<emphasis id="B975B407D210025EFE38FB0050E43612" box="[401,486,1268,1292]" italics="true" pageId="31" pageNumber="2813">tolerans</emphasis>
|
|||
|
|
</taxonomicName>
|
|||
|
|
were transferred from
|
|||
|
|
<taxonomicName id="4C011396D210025EFD4AFB0151AF3635" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="casei">
|
|||
|
|
<emphasis id="B975B407D210025EFD4AFB0151AF3635" italics="true" pageId="31" pageNumber="2813">L. casei</emphasis>
|
|||
|
|
</taxonomicName>
|
|||
|
|
[
|
|||
|
|
<bibRefCitation id="EF9015E4D210025EFF15FAE751E83635" author="Collins MD & Phillips BA & Zanoni P." box="[188,234,1299,1323]" pageId="31" pageNumber="2813" pagination="105 - 108" refId="ref66889" refString="168. Collins MD, Phillips BA, Zanoni P. Deoxyribonucleic acid homology studies of Lactobacillus casei, Lactobacillus paracasei sp. nov., subsp. paracasei and subsp. tolerans, and Lactobacillus rhamnosus sp. nov., comb. nov. Int J Syst Bacteriol 1989; 39: 105 - 108." type="journal article" year="1989">168</bibRefCitation>
|
|||
|
|
]. Original characteristics of
|
|||
|
|
<taxonomicName id="4C011396D210025EFD8CFAE053A53635" box="[549,679,1300,1323]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="species" species="paracasei">
|
|||
|
|
<emphasis id="B975B407D210025EFD8CFAE053A53635" box="[549,679,1300,1323]" italics="true" pageId="31" pageNumber="2813">L. paracasei</emphasis>
|
|||
|
|
</taxonomicName>
|
|||
|
|
strains are described in [
|
|||
|
|
<bibRefCitation id="EF9015E4D210025EFEEAFAC650703654" author="Collins MD & Phillips BA & Zanoni P." box="[323,370,1330,1354]" pageId="31" pageNumber="2813" pagination="105 - 108" refId="ref66889" refString="168. Collins MD, Phillips BA, Zanoni P. Deoxyribonucleic acid homology studies of Lactobacillus casei, Lactobacillus paracasei sp. nov., subsp. paracasei and subsp. tolerans, and Lactobacillus rhamnosus sp. nov., comb. nov. Int J Syst Bacteriol 1989; 39: 105 - 108." type="journal article" year="1989">168</bibRefCitation>
|
|||
|
|
]. Cells have superoxide dismutase activity [
|
|||
|
|
<bibRefCitation id="EF9015E4D210025EFF74FAA551FC3677" author="Wuyts S & Wittouck S & De Boeck I & Allonsius CN & Pasolli E" box="[221,254,1361,1385]" pageId="31" pageNumber="2813" refId="ref61324" refString="47. Wuyts S, Wittouck S, De Boeck I, Allonsius CN, Pasolli E et al. Large-scale phylogenomics of the Lactobacillus casei group highlights taxonomic inconsistencies and reveals novel cladeassociated features. mSystems 2017; 2: e 00061 - 17." type="journal volume" year="2017">47</bibRefCitation>
|
|||
|
|
], are rods (0.8–1.0×2.0–4.0 µm), often with square ends, occurring singly or in chains. Growth is observed between 10 and 40 °C. Some strains grow at 5 and 45 °C. Two subspecies are validly published. The genome size of the type strain is 2.88 Mbp. The mol% G+C content of DNAis 46.5.
|
|||
|
|
</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
<subSubSection id="C31B3B9ED210025EFFD0F9EE51D334BD" pageId="31" pageNumber="2813" type="description">
|
|||
|
|
<paragraph id="8BBE6815D210025EFFD0F9EE50BA3591" blockId="31.[121,760,1562,1679]" pageId="31" pageNumber="2813">
|
|||
|
|
Strains of this species have a nomadic lifestyle and were isolated from a variety of courses including the human oral cavity [
|
|||
|
|
<bibRefCitation id="EF9015E4D210025EFF6AF9AC51ED356E" author="Dal Bello F & Hertel C." box="[195,239,1624,1648]" pageId="31" pageNumber="2813" pagination="69 - 76" refId="ref66947" refString="169. Dal Bello F, Hertel C. Oral cavity as natural reservoir for intestinal lactobacilli. Syst Appl Microbiol 2006; 29: 69 - 76." type="journal article" year="2006">169</bibRefCitation>
|
|||
|
|
], fermented cereals, vegetables, meats, dairy products and in invertebrate hosts.
|
|||
|
|
</paragraph>
|
|||
|
|
<paragraph id="8BBE6815D210025EFFD0F951505035C5" blockId="31.[121,760,1700,1756]" pageId="31" pageNumber="2813">
|
|||
|
|
Thetypestrainis DSM 5622
|
|||
|
|
<superScript id="7C74C55DD210025EFE3BF950509935AC" attach="none" box="[402,411,1700,1714]" fontSize="6" pageId="31" pageNumber="2813">T</superScript>
|
|||
|
|
=ATCC 25302
|
|||
|
|
<superScript id="7C74C55DD210025EFD86F950533A35AC" attach="none" box="[559,568,1700,1714]" fontSize="6" pageId="31" pageNumber="2813">T</superScript>
|
|||
|
|
=AS 1.2826
|
|||
|
|
<superScript id="7C74C55DD210025EFD07F95053B535AC" attach="none" box="[686,695,1700,1714]" fontSize="6" pageId="31" pageNumber="2813">T</superScript>
|
|||
|
|
=JCM 8130
|
|||
|
|
<superScript id="7C74C55DD210025EFF05F93751B435CF" attach="none" box="[172,182,1731,1745]" fontSize="6" pageId="31" pageNumber="2813">T</superScript>
|
|||
|
|
=LMG 13087
|
|||
|
|
<superScript id="7C74C55DD210025EFEEDF937504E35CF" attach="none" box="[324,332,1731,1745]" fontSize="6" pageId="31" pageNumber="2813">T</superScript>
|
|||
|
|
.
|
|||
|
|
</paragraph>
|
|||
|
|
<paragraph id="8BBE6815D210025EFFD0F90653C73414" blockId="31.[121,709,1778,1802]" box="[121,709,1778,1802]" pageId="31" pageNumber="2813">Genome sequence accession number: AZGH00000000.</paragraph>
|
|||
|
|
<paragraph id="8BBE6815D210025EFFD0F8D453FB3426" blockId="31.[121,761,1824,1848]" box="[121,761,1824,1848]" pageId="31" pageNumber="2813">
|
|||
|
|
16S rRNA gene accession number of the type strain:
|
|||
|
|
<accessionNumber id="9452F5F6D210025EFD37F8D453F73426" box="[670,757,1824,1848]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/D79212" pageId="31" pageNumber="2813">D79212</accessionNumber>
|
|||
|
|
.
|
|||
|
|
</paragraph>
|
|||
|
|
<paragraph id="8BBE6815D210025EFFD0F8BA51D334BD" blockId="31.[121,760,1870,1956]" pageId="31" pageNumber="2813">
|
|||
|
|
Two subspecies are recognized:
|
|||
|
|
<taxonomicName id="4C011396D210025EFE7FF8BA5032349B" authority="subsp. paracasei" class="Bacilli" family="Lactobacillaceae" genus="Lacticaseibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="subSpecies" species="paracasei" subSpecies="paracasei">
|
|||
|
|
<emphasis id="B975B407D210025EFE7FF8BA53FA3478" box="[470,760,1870,1894]" italics="true" pageId="31" pageNumber="2813">Lacticaseibacillus paracasei</emphasis>
|
|||
|
|
subsp.
|
|||
|
|
<emphasis id="B975B407D210025EFF65F89A5032349B" box="[204,304,1902,1925]" italics="true" pageId="31" pageNumber="2813">paracasei</emphasis>
|
|||
|
|
</taxonomicName>
|
|||
|
|
and
|
|||
|
|
<taxonomicName id="4C011396D210025EFED1F89951C934BA" class="Bacilli" family="Lactobacillaceae" genus="Lacticaseibacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="31" pageNumber="2813" phylum="Firmicutes" rank="subSpecies" species="paracasei" subSpecies="tolerans">
|
|||
|
|
<emphasis id="B975B407D210025EFED1F89953A7349B" box="[376,677,1901,1925]" italics="true" pageId="31" pageNumber="2813">Lacticaseibacillus paracasei</emphasis>
|
|||
|
|
subsp.
|
|||
|
|
<emphasis id="B975B407D210025EFFD0F87851C934BA" box="[121,203,1932,1956]" italics="true" pageId="31" pageNumber="2813">tolerans</emphasis>
|
|||
|
|
</taxonomicName>
|
|||
|
|
.
|
|||
|
|
</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
</treatment>
|
|||
|
|
</document>
|