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<mods:title id="BBB94D354D6CFA51733897A8B62C2069">A century of stasis: Taxonomy of Ctenomys (Rodentia: Hystricomorpha) populations in northeastern Patagonia limits, Argentina</mods:title>
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<mods:namePart id="2F440ACC766E6C762CDE6B0F97EB6896">Tammone, Mauro N.</mods:namePart>
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<mods:namePart id="988BFE8A67112D5EDBEA8746F6AEDD7C">Lacey, Eileen A.</mods:namePart>
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<mods:namePart id="9A284D5AB7C4D0EF26755CAD65288A0B">Pardiñas, Ulyses F. J.</mods:namePart>
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<mods:date id="252B79F25D209AAD645B4CEE2B12FFE4">2022</mods:date>
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<mods:number id="106EB5BC824AEADF7111F049B9DAB956">2022-05-31</mods:number>
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<mods:identifier id="E6AFF3D77ED99C7B45AE7481A00DD655" type="ISSN">1873-2674</mods:identifier>
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<subSubSection id="16B5B0C80015FFE5FFE4FE7ADD12FE01" box="[100,598,384,404]" pageId="3" pageNumber="139" type="nomenclature">
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<paragraph id="5E10E3430015FFE5FFE4FE7ADD12FE01" blockId="3.[100,598,384,404]" box="[100,598,384,404]" pageId="3" pageNumber="139">
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<heading id="0558542F0015FFE5FFE4FE7ADD12FE01" box="[100,598,384,404]" fontSize="36" level="2" pageId="3" pageNumber="139" reason="3">
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<emphasis id="6CDB3F510015FFE5FFE4FE7ADD12FE01" box="[100,598,384,404]" italics="true" pageId="3" pageNumber="139">
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<emphasis id="6CDB3F510015FFE5FFE4FE7ADEC5FE01" bold="true" box="[100,385,384,403]" italics="true" pageId="3" pageNumber="139">2.3. Divergence time within the</emphasis>
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<taxonomicName id="99AF98C00015FFE5FE08FE7BDD42FE01" ID-CoL="3265F" authorityName="Bennett" authorityYear="1836" box="[392,518,384,404]" class="Mammalia" family="Ctenomyidae" genus="Ctenomys" kingdom="Animalia" order="Rodentia" pageId="3" pageNumber="139" phylum="Chordata" rank="species" species="magellanicus">
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“
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<emphasis id="6CDB3F510015FFE5FE14FE7ADD42FE01" bold="true" box="[404,518,384,403]" italics="true" pageId="3" pageNumber="139">magellanicus</emphasis>
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</taxonomicName>
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”
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<emphasis id="6CDB3F510015FFE5FD99FE7ADD12FE01" bold="true" box="[537,598,384,403]" italics="true" pageId="3" pageNumber="139">lineage</emphasis>
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</emphasis>
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</heading>
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</paragraph>
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<subSubSection id="16B5B0C80015FFE5FF04FE43DE8FFC50" pageId="3" pageNumber="139" type="description">
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<paragraph id="5E10E3430015FFE5FF04FE43DE8FFC50" blockId="3.[100,770,440,962]" pageId="3" pageNumber="139">
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To explore divergence times for the
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<taxonomicName id="99AF98C00015FFE5FE67FE42DD26FE59" authorityName="Bennett" authorityYear="1836" box="[487,610,440,459]" class="Mammalia" family="Ctenomyidae" genus="Ctenomys" kingdom="Animalia" order="Rodentia" pageId="3" pageNumber="139" phylum="Chordata" rank="species" species="magellanicus">
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“
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<emphasis id="6CDB3F510015FFE5FE70FE42DD26FE59" bold="true" box="[496,610,440,459]" italics="true" pageId="3" pageNumber="139">magellanicus</emphasis>
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</taxonomicName>
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” lineage, a calibrated phylogeny was generated using BEAST v2.6.3 (Bouckaert et al., 2019), as implemented in the CIPRES Getaway portal (
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<bibRefCitation id="3A3E9EB20015FFE5FD0CFE0ADFD0FD8D" author="Miller, M. A. & Pfeiffer, W. & Schwartz, T." pageId="3" pageNumber="139" pagination="1 - 8" refId="ref13578" refString="Miller, M. A., Pfeiffer, W., Schwartz, T., 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, LA, USA, pp. 1 - 8." type="book chapter" year="2010">Miller et al. 2010</bibRefCitation>
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). Three secondary calibration points were used (normal distribution assumed:
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<tableCitation id="132DD6F80015FFE5FF69FDD2DE69FDA9" box="[233,301,552,571]" captionStart="Table 2" captionStartId="3.[100,150,1269,1285]" captionText="Table 2 Estimated divergence times for tMRCA for the three sub-clades within the “magellanicus” lineage and for known species of Ctenomys within them. The estimated timing of the three calibration points used in these analyses is shown. All estimates are expressed as mean divergence times (and 95% highest posterior density) in millions of years (Ma.)." pageId="3" pageNumber="139">Table 2</tableCitation>
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); these dates, which were obtained from
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<bibRefCitation id="3A3E9EB20015FFE5FD28FDD2DE47FDC5" author="Caraballo, D. A. & Rossi, M. S." pageId="3" pageNumber="139" pagination="11 - 23" refId="ref11689" refString="Caraballo, D. A., Rossi, M. S., 2018. Spatial and temporal divergence of the torquatus species group of the subterranean rodent Ctenomys. Contributions to Zoology 87, 11 - 23. https: // doi. org / 10.1163 / 18759866 - 08701002." type="journal article" year="2018">Caraballo and Rossi (2018)</bibRefCitation>
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, were chosen for use in our analyses because they had been determined using both living species and fossil record, and includes representatives of all the recognized species groups. Node constraints within the
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<taxonomicName id="99AF98C00015FFE5FF48FD6DDE07FD38" authorityName="Bennett" authorityYear="1836" box="[200,323,663,682]" class="Mammalia" family="Ctenomyidae" genus="Ctenomys" kingdom="Animalia" order="Rodentia" pageId="3" pageNumber="139" phylum="Chordata" rank="species" species="magellanicus">
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“
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<emphasis id="6CDB3F510015FFE5FF51FD6DDE07FD38" bold="true" box="[209,323,663,682]" italics="true" pageId="3" pageNumber="139">magellanicus</emphasis>
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</taxonomicName>
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” lineage were based on monophyletic taxon sets identified by our phylogenetic analyses (see Results). A relaxed lognormal clock model of substitution rate and the calibrated Yule speciation prior were used (Drummond et al., 2006; Heled and Drummond, 2012). Models were run using 1 ×
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<superScript id="A9DA4E0B0015FFE5FE71FCFDDD56FC9D" attach="left" box="[497,530,769,794]" fontSize="6" pageId="3" pageNumber="139">108</superScript>
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MCMC generations, with sampling every 5000 generations. Convergence of output, mean, and 95% highest posterior density (HPD) divergence times estimated for the most recent common ancestor (tMRCA; crown ages) for each taxon set were visualized in Tracer v1.7 (
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<bibRefCitation id="3A3E9EB20015FFE5FE1AFC8CDD24FC18" author="Rambaut, A. & Drummond, A. J. & Xie, D. & Baele, G. & Suchard, M. A." box="[410,608,886,906]" pageId="3" pageNumber="139" pagination="901 - 904" refId="ref14183" refString="Rambaut, A., Drummond, A. J., Xie, D., Baele, G., Suchard, M. A., 2018. Posterior summarization in bayesian phylogenetics using tracer 1.7. Syst. Biol. 67, 901 - 904. https: // doi. org / 10.1093 / sysbio / syy 032." type="journal article" year="2018">Rambaut et al. 2018</bibRefCitation>
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). The parameter values employed in these analyses are available in the XML template provided in Supplementary Data SD2.
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</paragraph>
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</treatment>
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</document>
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