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<mods:title id="411769F0D497D73EC00F6AE747644E7B">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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<mods:namePart id="54C480B99390F3759E00B69C536DC45A">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="64D1C3DB8834F47E14E5EB1324F0E365">Wittouck, Stijn</mods:namePart>
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<mods:namePart id="1B450FC90D72124DD5D329C2BA3BCF04">Salvetti, Elisa</mods:namePart>
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<mods:namePart id="55885E0ED9DFEEE61FEB413643930811">Franz, Charles M. A. P.</mods:namePart>
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<mods:namePart id="7AA5CB69F4C81B09F8BCBACC176B521F">Harris, Hugh M. B.</mods:namePart>
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<mods:namePart id="1A8EB2E59C4237DA3DA24D6BA79305C7">Mattarelli, Paola</mods:namePart>
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<mods:namePart id="56585DF59C3F358D0E2C3541F76B4FEF">O’Toole, Paul W.</mods:namePart>
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<mods:namePart id="9183C98B969E2F100F7BF0781315DE16">Pot, Bruno</mods:namePart>
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<mods:namePart id="EC3C0038BC3D62B208A6E0F107A7779E">Vandamme, Peter</mods:namePart>
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<mods:namePart id="0698893E770CC7D3581A5302DC5B0414">Walter, Jens</mods:namePart>
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<mods:namePart id="8CDF6CB0851FC185C1FE692C0CC47E7D">Watanabe, Koichi</mods:namePart>
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<mods:namePart id="0CC94C8B04C06E4017956CD703FF559E">Wuyts, Sander</mods:namePart>
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<mods:namePart id="93C012CDF17D1484379D040A18E5B947">Felis, Giovanna E.</mods:namePart>
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<mods:namePart id="9622B49392422C88E7B5CC298B3C549A">Gänzle, Michael G.</mods:namePart>
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<mods:namePart id="9F878A2F586486E206BCD9A901EAF55A">Lebeer, Sarah</mods:namePart>
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<mods:title id="4BFDBC45AFB7103098359CD00A26A032">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:date id="2E03C94ED5E4ACB0B48ADED5950D3345">2020</mods:date>
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<mods:number id="0A4E45E63F9CB1C428A7AB6B17AD91FF">2020-04-01</mods:number>
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<mods:number id="6F1ECF3A83EE0ED0B937DDF5BF55CAFC">70</mods:number>
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<mods:url id="160B000325B17F25212C941EDA20ABBC">http://dx.doi.org/10.1099/ijsem.0.004107</mods:url>
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<mods:identifier id="48A78B06FC78ADCD507A41368725C3CD" type="ISSN">1466-5034</mods:identifier>
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<treatment id="0389878AFFA4215BDA0BF915FDF26065" ID-DOI="http://doi.org/10.5281/zenodo.6309861" ID-Zenodo-Dep="6309861" LSID="urn:lsid:plazi:treatment:0389878AFFA4215BDA0BF915FDF26065" httpUri="http://treatment.plazi.org/id/0389878AFFA4215BDA0BF915FDF26065" lastPageId="42" lastPageNumber="2824" pageId="41" pageNumber="2823">
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<subSubSection id="C33A6517FFA42158DA0BF915FBC364A2" pageId="41" pageNumber="2823" type="nomenclature">
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<paragraph id="8B9F369CFFA42158DA0BF915FBC364A2" blockId="41.[828,1467,1667,1955]" pageId="41" pageNumber="2823">
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<heading id="D0D781F0FFA42158DA0BF915FBC364A2" allCaps="true" bold="true" fontSize="12" level="2" pageId="41" pageNumber="2823" reason="3">
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<emphasis id="B954EA8EFFA42158DA0BF915FBC364A2" bold="true" pageId="41" pageNumber="2823">
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DESCRIPTION OF
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<taxonomicName id="4C204D1FFFA42158DD02F915FC1064A2" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Ligilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="41" pageNumber="2823" phylum="Firmicutes" rank="species" species="murinus" status="comb. nov.">
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<emphasis id="B954EA8EFFA42158DD02F915FC1064A2" bold="true" italics="true" pageId="41" pageNumber="2823">LIGILACTOBACILLUS MURINUS</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A26757F5FFA42158DAF0F93EFBC364A2" box="[967,1132,1704,1733]" pageId="41" pageNumber="2823" rank="species">COMB. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FFA42158DA0BF944FA14648D" box="[828,1467,1746,1771]" pageId="41" pageNumber="2823" type="etymology">
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<paragraph id="8B9F369CFFA42158DA0BF944FA14648D" blockId="41.[828,1467,1667,1955]" box="[828,1467,1746,1771]" pageId="41" pageNumber="2823">
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<taxonomicName id="4C204D1FFFA42158DA0BF944FBEF648D" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[828,1088,1746,1770]" class="Bacilli" family="Lactobacillaceae" genus="Ligilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="41" pageNumber="2823" phylum="Firmicutes" rank="species" species="murinus">
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<emphasis id="B954EA8EFFA42158DA0BF944FBEF648D" box="[828,1088,1746,1770]" italics="true" pageId="41" pageNumber="2823">Ligilactobacillus murinus</emphasis>
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</taxonomicName>
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(mu.ri’nus. L. adj.
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<taxonomicName id="4C204D1FFFA42158DC36F945FAF6648D" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[1281,1369,1747,1770]" class="Bacilli" family="Lactobacillaceae" genus="Ligilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="41" pageNumber="2823" phylum="Firmicutes" rank="species" species="murinus">
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<emphasis id="B954EA8EFFA42158DC36F945FAF6648D" box="[1281,1369,1747,1770]" italics="true" pageId="41" pageNumber="2823">murinus</emphasis>
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</taxonomicName>
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of mice).
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FFA4215BDA0BF897FF5C635C" lastPageId="42" lastPageNumber="2824" pageId="41" pageNumber="2823" type="description">
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<paragraph id="8B9F369CFFA42158DA0BF897FA1F657F" blockId="41.[828,1467,1667,1955]" box="[828,1456,1791,1817]" pageId="41" pageNumber="2823">
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Basonym:
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<taxonomicName id="4C204D1FFFA42158DA9CF896FAC7657E" authority="Hemme et al., 1982" authorityName="Hemme" authorityYear="1982" box="[939,1384,1792,1817]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="41" pageNumber="2823" phylum="Firmicutes" rank="species" species="murinus">
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<emphasis id="B954EA8EFFA42158DA9CF896FB3D657F" box="[939,1170,1792,1816]" italics="true" pageId="41" pageNumber="2823">Lactobacillus murinus</emphasis>
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Hemme
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<emphasis id="B954EA8EFFA42158DDC3F897FA8F657F" box="[1268,1312,1792,1816]" italics="true" pageId="41" pageNumber="2823">et al</emphasis>
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., 1982
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</taxonomicName>
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, 384
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<superScript id="7C559BD4FFA42158DCAFF969FA05656A" attach="none" box="[1432,1450,1791,1805]" fontSize="6" pageId="41" pageNumber="2823">VP</superScript>
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.
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</paragraph>
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<paragraph id="8B9F369CFFA4215BDA0BF8B9FEDC6289" blockId="41.[828,1467,1667,1955]" lastBlockId="42.[121,760,183,515]" lastPageId="42" lastPageNumber="2824" pageId="41" pageNumber="2823">
|
|||
|
|
<taxonomicName id="4C204D1FFFA42158DA0BF8B9FC016521" box="[828,942,1839,1862]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="41" pageNumber="2823" phylum="Firmicutes" rank="species" species="murinus">
|
|||
|
|
<emphasis id="B954EA8EFFA42158DA0BF8B9FC016521" box="[828,942,1839,1862]" italics="true" pageId="41" pageNumber="2823">L. murinus</emphasis>
|
|||
|
|
</taxonomicName>
|
|||
|
|
strains are non-motile rods which slowly ferment ribose and arabinose. L-LDH is activated by FDP and Mn
|
|||
|
|
<superScript id="7C559BD4FFA42158DC93F8DAFA1A653D" attach="left" box="[1444,1461,1868,1882]" fontSize="6" pageId="41" pageNumber="2823">2+</superScript>
|
|||
|
|
. They do not hydrolyse urea and hippurate; they decarboxylate malate. Riboflavin is a required growth factor [
|
|||
|
|
<bibRefCitation id="EFB14B6DFFA42158DC62F81DFA2C65C4" author="Hemme D & Raibaud P & Ducluzeau R & Galpin J & Sicard P" box="[1365,1411,1931,1955]" pageId="41" pageNumber="2823" pagination="297 - 308" refId="ref69572" refString="222. Hemme D, Raibaud P, Ducluzeau R, Galpin J, Sicard P et al. Lactobacillus murinus n. sp., une nouvelle espece de la flore dominante autochtone du tube digestif du rat et de la souris. Ann Microbiol 1980; 131 A: 297 - 308." type="journal article" year="1980">222</bibRefCitation>
|
|||
|
|
]. The genome size of the
|
|||
|
|
<typeStatus id="549B883EFFA7215BD87EFF21FED862A8" box="[329,375,183,207]" pageId="42" pageNumber="2824">type</typeStatus>
|
|||
|
|
strain is 2.20 Mbp. The mol% G+C content of DNA is 40.1.
|
|||
|
|
</paragraph>
|
|||
|
|
<paragraph id="8B9F369CFFA7215BD94EFE92FF5C635C" blockId="42.[121,760,183,515]" pageId="42" pageNumber="2824">Isolated from the intestinal tract of mice and rats and from sourdough.</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
<subSubSection id="C33A6517FFA7215BD94EFEC7FE5363C1" pageId="42" pageNumber="2824" type="materials_examined">
|
|||
|
|
<paragraph id="8B9F369CFFA7215BD94EFEC7FE5363C1" blockId="42.[121,760,183,515]" pageId="42" pageNumber="2824">
|
|||
|
|
<materialsCitation id="3B483CC1FFA7215BD94EFEC7FD5763EF" accessionNumber="DSM 20452" collectionCode="T, DSM, IFO, NBRC" pageId="42" pageNumber="2824" specimenCode="ATCC 35020, CCUG 33904, CIP 104818, CNRZ 220" specimenCount="1" typeStatus="holotype">
|
|||
|
|
The
|
|||
|
|
<typeStatus id="549B883EFFA7215BD99DFEC7FF76630E" box="[170,217,337,361]" pageId="42" pageNumber="2824">type</typeStatus>
|
|||
|
|
strain is 313
|
|||
|
|
<superScript id="7C559BD4FFA7215BD85DFED9FEDB633A" attach="left" box="[362,372,335,349]" fontSize="6" pageId="42" pageNumber="2824">
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|||
|
|
<collectionCode id="ED31AE59FFA7215BD85DFED9FEDB633A" box="[362,372,335,349]" name="Tavera, Department of Geology and Geophysics" pageId="42" pageNumber="2824">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<specimenCode id="DB869EE7FFA7215BD8A1FEC7FD8A630F" box="[406,549,336,361]" collectionCode="ATCC" country="USA" httpUri="http://grbio.org/cool/b0k1-wg01" name="American Type Culture Collection" pageId="42" pageNumber="2824">ATCC 35020</specimenCode>
|
|||
|
|
<superScript id="7C559BD4FFA7215BDB11FED9FD9F633A" attach="right" box="[550,560,335,349]" fontSize="6" pageId="42" pageNumber="2824">
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BDB11FED9FD9F633A" box="[550,560,335,349]" name="Tavera, Department of Geology and Geophysics" pageId="42" pageNumber="2824">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<specimenCode id="DB869EE7FFA7215BDB09FEC7FD7A630E" box="[574,725,337,361]" collectionCode="CCUG" country="Sweden" httpUri="http://grbio.org/cool/td22-j49f" name="Culture Collection, University of Goteborg, Department of Clinical Bacteriology" pageId="42" pageNumber="2824">CCUG 33904</specimenCode>
|
|||
|
|
<superScript id="7C559BD4FFA7215BDBE2FED9FD70633A" attach="left" box="[725,735,335,349]" fontSize="6" pageId="42" pageNumber="2824">
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|||
|
|
<collectionCode id="ED31AE59FFA7215BDBE2FED9FD70633A" box="[725,735,335,349]" name="Tavera, Department of Geology and Geophysics" pageId="42" pageNumber="2824">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<specimenCode id="DB869EE7FFA7215BD94EFEE6FF5A63EF" box="[121,245,368,392]" collectionCode="CIP" country="Colombia" httpUri="http://grbio.org/cool/kny8-abms" name="Centro de Investigaciones Pesqueras" pageId="42" pageNumber="2824">CIP 104818</specimenCode>
|
|||
|
|
<superScript id="7C559BD4FFA7215BD9C2FEF8FF50631B" attach="none" box="[245,255,366,380]" fontSize="6" pageId="42" pageNumber="2824">
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BD9C2FEF8FF50631B" box="[245,255,366,380]" name="Tavera, Department of Geology and Geophysics" pageId="42" pageNumber="2824">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<specimenCode id="DB869EE7FFA7215BD83AFEE6FE2F63EF" box="[269,384,368,392]" collectionCode="CNRZ" country="France" httpUri="http://grbio.org/cool/zkkf-z1kp" name="Centre National de Recherches Zootechniques" pageId="42" pageNumber="2824">CNRZ 220</specimenCode>
|
|||
|
|
<superScript id="7C559BD4FFA7215BD8B6FEF8FE24631B" attach="left" box="[385,395,366,380]" fontSize="6" pageId="42" pageNumber="2824">
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BD8B6FEF8FE24631B" box="[385,395,366,380]" name="Tavera, Department of Geology and Geophysics" pageId="42" pageNumber="2824">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BD892FEE6FE7263EF" box="[421,477,368,392]" country="Germany" httpUri="http://grbio.org/cool/4644-42cg" name="Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH" pageId="42" pageNumber="2824">DSM</collectionCode>
|
|||
|
|
20452
|
|||
|
|
<superScript id="7C559BD4FFA7215BDB15FEF8FD83631B" attach="none" box="[546,556,366,380]" fontSize="6" pageId="42" pageNumber="2824">
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BDB15FEF8FD83631B" box="[546,556,366,380]" name="Tavera, Department of Geology and Geophysics" pageId="42" pageNumber="2824">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BDB0DFEE6FDC963EF" box="[570,614,368,392]" country="Japan" httpUri="http://biocol.org/urn:lsid:biocol.org:col:13295" lsid="urn:lsid:biocol.org:col:13295" name="Institute for Fermentation" pageId="42" pageNumber="2824" type="Herbarium">IFO</collectionCode>
|
|||
|
|
(now
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BDB9EFEE6FD5E63EF" box="[681,753,368,392]" country="Japan" httpUri="http://grbio.org/cool/sq2m-rc8c" name="NITE Biological Resource Center" pageId="42" pageNumber="2824">NBRC</collectionCode>
|
|||
|
|
)
|
|||
|
|
</materialsCitation>
|
|||
|
|
<materialsCitation id="3B483CC1FFA7215BD94EFE19FE5963FC" accessionNumber="LMG 14189" box="[121,502,397,423]" collectionCode="T, LMG" pageId="42" pageNumber="2824" specimenCode="JCM 1717" specimenCount="1">
|
|||
|
|
14221
|
|||
|
|
<superScript id="7C559BD4FFA7215BD98EFE1BFF6C63FC" attach="left" box="[185,195,397,411]" fontSize="6" pageId="42" pageNumber="2824">
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BD98EFE1BFF6C63FC" box="[185,195,397,411]" name="Tavera, Department of Geology and Geophysics" pageId="42" pageNumber="2824">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<specimenCode id="DB869EE7FFA7215BD9E9FE19FEE663C0" box="[222,329,399,423]" collectionCode="JCM" country="Japan" httpUri="http://grbio.org/cool/iyky-md37" name="Japan Collection of Microorganisms" pageId="42" pageNumber="2824">JCM 1717</specimenCode>
|
|||
|
|
<superScript id="7C559BD4FFA7215BD87EFE1BFEFC63FC" attach="left" box="[329,339,397,411]" fontSize="6" pageId="42" pageNumber="2824">
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BD87EFE1BFEFC63FC" box="[329,339,397,411]" name="Tavera, Department of Geology and Geophysics" pageId="42" pageNumber="2824">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
=
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BD858FE19FE0763C0" box="[367,424,399,423]" country="Belgium" httpUri="http://grbio.org/cool/0fkg-rcci" name="Belgian Coordinated Collections of Microorganisms/ LMG Bacteria Collection" pageId="42" pageNumber="2824">LMG</collectionCode>
|
|||
|
|
14189
|
|||
|
|
<superScript id="7C559BD4FFA7215BD8D9FE1BFE5963FC" attach="none" box="[494,502,397,411]" fontSize="6" pageId="42" pageNumber="2824">
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BD8D9FE1BFE5963FC" box="[494,502,397,411]" name="Tavera, Department of Geology and Geophysics" pageId="42" pageNumber="2824">T</collectionCode>
|
|||
|
|
</superScript>
|
|||
|
|
</materialsCitation>
|
|||
|
|
.
|
|||
|
|
</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
<subSubSection id="C33A6517FFA7215BD94EFE2BFDF563B2" box="[121,602,444,469]" pageId="42" pageNumber="2824" type="description">
|
|||
|
|
<paragraph id="8B9F369CFFA7215BD94EFE2BFDF563B2" blockId="42.[121,760,183,515]" box="[121,602,444,469]" pageId="42" pageNumber="2824">Genome accession number: AYYN00000000.</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
<subSubSection id="C33A6517FFA7215BD94EFE7CFDF26065" box="[121,605,490,515]" pageId="42" pageNumber="2824" type="materials_examined">
|
|||
|
|
<paragraph id="8B9F369CFFA7215BD94EFE7CFDF26065" blockId="42.[121,760,183,515]" box="[121,605,490,515]" pageId="42" pageNumber="2824">
|
|||
|
|
16S rRNA gene accession number:
|
|||
|
|
<accessionNumber id="9473AB7FFFA7215BD8D9FE7CFDF66065" box="[494,601,490,514]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/AJ621554" pageId="42" pageNumber="2824">
|
|||
|
|
<collectionCode id="ED31AE59FFA7215BD8D9FE7CFDA46065" box="[494,523,490,514]" country="Japan" name="Central Research Laboratories" pageId="42" pageNumber="2824">AJ</collectionCode>
|
|||
|
|
621554
|
|||
|
|
</accessionNumber>
|
|||
|
|
.
|
|||
|
|
</paragraph>
|
|||
|
|
</subSubSection>
|
|||
|
|
</treatment>
|
|||
|
|
</document>
|