116 lines
6.8 KiB
Turtle
116 lines
6.8 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
|
||
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
|
||
@prefix bibo: <http://purl.org/ontology/bibo/> .
|
||
@prefix cito: <http://purl.org/spar/cito/> .
|
||
@prefix dc: <http://purl.org/dc/elements/1.1/> .
|
||
@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
|
||
@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
|
||
@prefix fabio: <http://purl.org/spar/fabio/> .
|
||
@prefix trt: <http://plazi.org/vocab/treatment#> .
|
||
|
||
<http://treatment.plazi.org/id/634C2847FF9EFFB2FF1CBD53FD63FD06>
|
||
cito:cites <http://dx.doi.org/10.5281/zenodo.13213344>, <http://dx.doi.org/10.5281/zenodo.13213346>, <http://dx.doi.org/10.5281/zenodo.13213348> ;
|
||
dc:creator "Zhou, Si-Xuan; Bao, Dan-Feng; Zhang, Tao; Xiao, Yuan-Pin; Tang, Yuan-Jiang; Jing, Zhang; Lu, Yu-Xi; Shi, Kai-Zhi" ;
|
||
dc:title "Colletotrichum berchemiae S. X. Zhou, sp. nov." ;
|
||
dwc:basisOfRecord <http://tb.plazi.org/GgServer/dwcaRecords/634C2847FF9EFFB2FF1CBD53FD63FD06.mc.5B8D930CFF9EFFB7FF1CBDC3FE74FA0B> ;
|
||
trt:definesTaxonConcept <http://taxon-concept.plazi.org/id/Fungi/Colletotrichum_berchemiae_Zhou_2024> ;
|
||
trt:publishedIn <http://dx.doi.org/10.11646/phytotaxa.640.1.1> ;
|
||
a trt:Treatment .
|
||
|
||
<http://dx.doi.org/10.11646/phytotaxa.640.1.1>
|
||
bibo:endPage "15" ;
|
||
bibo:issue "1" ;
|
||
bibo:journal "Phytotaxa" ;
|
||
bibo:pubDate "2024-03-07" ;
|
||
bibo:startPage "1" ;
|
||
bibo:volume "640" ;
|
||
dc:creator "Zhou, Si-Xuan; Bao, Dan-Feng; Zhang, Tao; Xiao, Yuan-Pin; Tang, Yuan-Jiang; Jing, Zhang; Lu, Yu-Xi; Shi, Kai-Zhi" ;
|
||
dc:date "2024" ;
|
||
dc:title "Two new endophytic fungi of Colletotrichum and Diaporthe isolated from Berchemia polyphylla var. leioclada in Guizhou Province, China" ;
|
||
fabio:hasPart <http://dx.doi.org/10.5281/zenodo.13213344>, <http://dx.doi.org/10.5281/zenodo.13213346>, <http://dx.doi.org/10.5281/zenodo.13213348> ;
|
||
a fabio:JournalArticle .
|
||
|
||
<http://taxon-concept.plazi.org/id/Fungi/Colletotrichum_berchemiae_Zhou_2024>
|
||
# Warning: Using document metadata for authority year ;
|
||
dwc:authority "S.X. Zhou" ;
|
||
dwc:authorityName "S. X. Zhou" ;
|
||
dwc:class "Dothideomycetes" ;
|
||
dwc:family "Botryosphaeriaceae" ;
|
||
dwc:genus "Colletotrichum" ;
|
||
dwc:kingdom "Fungi" ;
|
||
dwc:order "Botryosphaeriales" ;
|
||
dwc:phylum "Ascomycota" ;
|
||
dwc:rank "species" ;
|
||
dwc:scientificNameAuthorship "Zhou, 2024" ;
|
||
dwc:species "berchemiae" ;
|
||
trt:hasTaxonName <http://taxon-name.plazi.org/id/Fungi/Colletotrichum_berchemiae> ;
|
||
a dwcFP:TaxonConcept .
|
||
|
||
<http://taxon-name.plazi.org/id/Fungi/Colletotrichum_berchemiae>
|
||
dwc:class "Dothideomycetes" ;
|
||
dwc:family "Botryosphaeriaceae" ;
|
||
dwc:genus "Colletotrichum" ;
|
||
dwc:kingdom "Fungi" ;
|
||
dwc:order "Botryosphaeriales" ;
|
||
dwc:phylum "Ascomycota" ;
|
||
dwc:rank "species" ;
|
||
dwc:species "berchemiae" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Colletotrichum> ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://taxon-name.plazi.org/id/Fungi/Colletotrichum>
|
||
dwc:genus "Colletotrichum" ;
|
||
dwc:rank "genus" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Botryosphaeriaceae> ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://taxon-name.plazi.org/id/Fungi/Botryosphaeriaceae>
|
||
dwc:family "Botryosphaeriaceae" ;
|
||
dwc:rank "family" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Botryosphaeriales> ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://taxon-name.plazi.org/id/Fungi/Botryosphaeriales>
|
||
dwc:order "Botryosphaeriales" ;
|
||
dwc:rank "order" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Dothideomycetes> ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://taxon-name.plazi.org/id/Fungi/Dothideomycetes>
|
||
dwc:class "Dothideomycetes" ;
|
||
dwc:rank "class" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Ascomycota> ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://taxon-name.plazi.org/id/Fungi/Ascomycota>
|
||
dwc:phylum "Ascomycota" ;
|
||
dwc:rank "phylum" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Fungi> ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://taxon-name.plazi.org/id/Fungi>
|
||
dwc:kingdom "Fungi" ;
|
||
dwc:rank "kingdom" ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://dx.doi.org/10.5281/zenodo.13213344>
|
||
dc:description "FIGURE 1. Colletotrichum berchemiae (ex-type culture, GMBCC 20001). a, b Front and reverse colony on PDA. c–e Conidiomata on PDA. h–j Conidiophores. k–m Conidiogenous cells and conidia. n–p Conidia. Scale bars: f = 100 μm; g–i, n = 20 μm, j, k = 30um, l, m, o, p = 10 um." ;
|
||
fabio:hasRepresentation <https://zenodo.org/record/13213344/files/figure.png> ;
|
||
a fabio:Figure .
|
||
|
||
<http://dx.doi.org/10.5281/zenodo.13213346>
|
||
dc:description "FIGURE 2. Phylogenetic tree of Maximum Likelihood analyses of Colletotrichum gloeosporioides species complex and its closely related species (including sequences of our strain and a selection of related Colletotrichum spp.,), restricted according to the phylogenetic study of Supplementary Material (Figure S1). Colletotrichum hippeastri (CBS 125376) and C. boninense CBS 123755 were used as outgroup taxa. The tree was built using concatenated sequences of ITS, ACT, CHS-1, GADPH, and TUB2 datasets and the tree topology of the RAxML and Bayesian analyses are similar. The combined gene analysis included 86 strains with 2152 characters after aligned, including gaps (ITS: 593bp, ACT: 282bp, CHS-1: 299bp, GADPH: 277bp, and TUB2: 701bp). The RAxML analysis of the combined dataset yielded the best scoring tree with a final ML optimization likelihood value of -15857.131621. The matrix had 1198 distinct alignment patterns, with 23.12% undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.229650, C = 0.299082, G = 0.241413, T = 0.229855; substitution rates AC = 1.009331, AG = 2.892663, AT = 1.227390, CG = 0.965860, CT = 4.527049, GT = 1.000000; gamma distribution shape parameter α = 0.449663. Bootstrap support values for RAxML equal to or greater than 70% and Bayesian posterior probabilities equal to or greater than 0.90 are given at each node. The new isolate is shown in red and bold." ;
|
||
fabio:hasRepresentation <https://zenodo.org/record/13213346/files/figure.png> ;
|
||
a fabio:Figure .
|
||
|
||
<http://dx.doi.org/10.5281/zenodo.13213348>
|
||
dc:description "FIGURE 3. Results of the PHI test of Colletotrichum berchemiae and closely related species using both LogDet transformation and splits decomposition. The PHI test results (Φw) <0.05 indicate significant recombination within the dataset. The new taxa are in red." ;
|
||
fabio:hasRepresentation <https://zenodo.org/record/13213348/files/figure.png> ;
|
||
a fabio:Figure .
|
||
|
||
<http://tb.plazi.org/GgServer/dwcaRecords/634C2847FF9EFFB2FF1CBD53FD63FD06.mc.5B8D930CFF9EFFB7FF1CBDC3FE74FA0B>
|
||
dwc:catalogNumber "KUN-HKAS 131984" ;
|
||
dwc:typeStatus "holotype" ;
|
||
trt:httpUri <https://treatment.plazi.org/id/634C2847FF9EFFB2FF1CBD53FD63FD06#5B8D930CFF9EFFB7FF1CBDC3FE74FA0B> ;
|
||
a dwc:MaterialCitation .
|