120 lines
6.4 KiB
Turtle
120 lines
6.4 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/03B754521566FF8C3624FE1CFA8181D6>
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cito:cites <http://dx.doi.org/10.5281/zenodo.10933777>, <http://dx.doi.org/10.5281/zenodo.10933779> ;
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dc:creator "Tukmechi, Amir; Ownagh, Abdulghaffar; Enferadi, Ahmad; Khademi, Peyman" ;
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dc:title "Francisella tularensis Dorofeev 1947" ;
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trt:augmentsTaxonConcept <http://taxon-concept.plazi.org/id/Bacteria/Francisella_tularensis_Dorofeev_1947> ;
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trt:publishedIn <http://dx.doi.org/10.1016/j.ijppaw.2023.11.005> ;
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a trt:Treatment .
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<http://dx.doi.org/10.1016/j.ijppaw.2023.11.005>
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bibo:endPage "100892" ;
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bibo:journal "International Journal for Parasitology: Parasites and Wildlife" ;
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bibo:pubDate "2024-04-30" ;
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bibo:startPage "100892" ;
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bibo:volume "23" ;
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dc:creator "Tukmechi, Amir; Ownagh, Abdulghaffar; Enferadi, Ahmad; Khademi, Peyman" ;
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dc:date "2024" ;
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dc:title "First molecular detection of Francisella tularensis in turtle (Testudo graeca) and ticks (Hyalomma aegyptium) in Northwest of Iran" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.10933777>, <http://dx.doi.org/10.5281/zenodo.10933779> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Bacteria/Francisella_tularensis_Dorofeev_1947>
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dwc:authority "Dorofeev, 1947" ;
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dwc:authorityName "Dorofeev" ;
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dwc:authorityYear "1947" ;
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dwc:class "Gammaproteobacteria" ;
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dwc:family "Francisellaceae" ;
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dwc:genus "Francisella" ;
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dwc:kingdom "Bacteria" ;
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dwc:order "Thiotrichales" ;
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dwc:phylum "Proteobacteria" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Dorofeev, 1947" ;
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dwc:species "tularensis" ;
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rdfs:seeAlso <https://www.catalogueoflife.org/data/taxon/6JLDK> ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Bacteria/Francisella_tularensis> ;
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a dwcFP:TaxonConcept .
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<http://taxon-name.plazi.org/id/Bacteria/Francisella_tularensis>
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dwc:class "Gammaproteobacteria" ;
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dwc:family "Francisellaceae" ;
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dwc:genus "Francisella" ;
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dwc:kingdom "Bacteria" ;
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dwc:order "Thiotrichales" ;
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dwc:phylum "Proteobacteria" ;
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dwc:rank "species" ;
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dwc:species "tularensis" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria/Francisella> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Bacteria/Francisella>
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dwc:class "Gammaproteobacteria" ;
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dwc:family "Francisellaceae" ;
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dwc:genus "Francisella" ;
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dwc:kingdom "Bacteria" ;
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dwc:order "Thiotrichales" ;
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dwc:phylum "Proteobacteria" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria/Francisellaceae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Bacteria/Francisellaceae>
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dwc:class "Gammaproteobacteria" ;
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dwc:family "Francisellaceae" ;
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dwc:kingdom "Bacteria" ;
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dwc:order "Thiotrichales" ;
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dwc:phylum "Proteobacteria" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria/Thiotrichales> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Bacteria/Thiotrichales>
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dwc:class "Gammaproteobacteria" ;
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dwc:kingdom "Bacteria" ;
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dwc:order "Thiotrichales" ;
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dwc:phylum "Proteobacteria" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria/Gammaproteobacteria> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Bacteria/Gammaproteobacteria>
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dwc:class "Gammaproteobacteria" ;
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dwc:kingdom "Bacteria" ;
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dwc:phylum "Proteobacteria" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria/Proteobacteria> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Bacteria/Proteobacteria>
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dwc:kingdom "Bacteria" ;
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dwc:phylum "Proteobacteria" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Bacteria>
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dwc:kingdom "Bacteria" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.10933777>
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dc:description "Fig. 2. The evolutionary lineage was determined using the Maximum Likelihood method and the Tamura-Nei model. The displayed tree represents the one with the most favorable log likelihood (429.22). Additionally, the branches are accompanied by the percentage denoting how frequently the related taxa formed clusters in the trees. The initial trees for exploratory purposes were automatically created using the Neighbor-Join and BioNJ algorithms. This was accomplished by utilizing a matrix of pairwise distances, which were calculated employing the Tamura-Nei model. From these initial trees, the one with the most favorable log likelihood value was selected. This analysis was conducted on a collection of 31 nucleotide sequences. The encompassed codon positions consisted of 1st+2nd+3rd +Noncoding. The final dataset consisted of a total of 306 positions. The evolutionary analyses were performed utilizing MEGA11." ;
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fabio:hasRepresentation <https://zenodo.org/record/10933777/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.10933779>
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dc:description "Fig. 3. The lineage’s evolutionary narrative was deduced through the application of the Neighbor-Joining technique. The most advantageous tree configuration is depicted. Adjacent to the branches, the percentages reflect how often the related taxa aggregated within the bootstrap test, comprising 1000 replicates. Evolutionary distances were calculated using the Maximum Composite Likelihood method, expressed as the count of base substitutions per site. In this study, a collective of 32 nucleotide sequences were taken into account. The codon positions covered 1st+2nd+3rd +Noncoding. Ambiguous positions were excluded for each sequence pair, following the pairwise deletion technique. In the culminating dataset, a collective count of 542 positions was encompassed. The evolutionary analyses were executed using MEGA11." ;
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fabio:hasRepresentation <https://zenodo.org/record/10933779/files/figure.png> ;
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a fabio:Figure .
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