159 lines
10 KiB
Turtle
159 lines
10 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/AA740057FFD7C568FCBAFBDFFE45FA34>
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cito:cites <http://taxon-concept.plazi.org/id/Animalia/Caenorhabditis_Slos_2017>, <http://dx.doi.org/10.5281/zenodo.1156818>, <http://dx.doi.org/10.5281/zenodo.1156820>, <http://dx.doi.org/10.5281/zenodo.1156822>, <http://dx.doi.org/10.5281/zenodo.1156824>, <http://dx.doi.org/10.5281/zenodo.1156826>, <http://dx.doi.org/10.5281/zenodo.1156828>, <http://dx.doi.org/10.5281/zenodo.1156830> ;
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dc:creator "Dieter Slos; Walter Sudhaus; Lewis Stevens; Wim Bert; Mark Blaxter" ;
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dc:title "Caenorhabditis monodelphis Dieter Slos & Walter Sudhaus & Lewis Stevens & Wim Bert & Mark Blaxter 2017" ;
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trt:augmentsTaxonConcept <http://taxon-concept.plazi.org/id/Animalia/Caenorhabditis_monodelphis_Slos_2017> ;
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trt:publishedIn <http://doi.org/10.5281/zenodo.6042436> ;
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a trt:Treatment .
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<http://doi.org/10.5281/zenodo.6042436>
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bibo:endPage "15" ;
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bibo:issue "4" ;
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bibo:journal "BMC Zoology" ;
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bibo:pubDate "2017-02-23" ;
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bibo:startPage "1" ;
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bibo:volume "2" ;
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dc:creator "Dieter Slos; Walter Sudhaus; Lewis Stevens; Wim Bert; Mark Blaxter" ;
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dc:date "2017" ;
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dc:title "Caenorhabditis monodelphis sp. n.: defining the stem morphology and genomics of the genus Caenorhabditis" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.1156818>, <http://dx.doi.org/10.5281/zenodo.1156820>, <http://dx.doi.org/10.5281/zenodo.1156822>, <http://dx.doi.org/10.5281/zenodo.1156824>, <http://dx.doi.org/10.5281/zenodo.1156826>, <http://dx.doi.org/10.5281/zenodo.1156828>, <http://dx.doi.org/10.5281/zenodo.1156830> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Animalia/Caenorhabditis_monodelphis_Slos_2017>
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dwc:authorityName "Dieter Slos & Walter Sudhaus & Lewis Stevens & Wim Bert & Mark Blaxter" ;
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dwc:authorityYear "2017" ;
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dwc:class "Chromadorea" ;
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dwc:family "Rhabditidae" ;
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dwc:genus "Caenorhabditis" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Rhabditida" ;
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dwc:phylum "Nematoda" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Dieter Slos & Walter Sudhaus & Lewis Stevens & Wim Bert & Mark Blaxter, 2017" ;
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dwc:species "monodelphis" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Caenorhabditis_monodelphis> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Animalia/Caenorhabditis_Slos_2017>
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dwc:authority "Dieter Slos & Walter Sudhaus & Lewis Stevens & Wim Bert & Mark Blaxter, 2017" ;
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dwc:authorityName "Dieter Slos & Walter Sudhaus & Lewis Stevens & Wim Bert & Mark Blaxter" ;
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dwc:authorityYear "2017" ;
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dwc:class "Chromadorea" ;
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dwc:family "Rhabditidae" ;
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dwc:genus "Caenorhabditis" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Rhabditida" ;
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dwc:phylum "Nematoda" ;
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dwc:rank "genus" ;
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dwc:scientificNameAuthorship "Dieter Slos & Walter Sudhaus & Lewis Stevens & Wim Bert & Mark Blaxter, 2017" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Caenorhabditis> ;
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a dwcFP:TaxonConcept .
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<http://taxon-name.plazi.org/id/Animalia/Caenorhabditis_monodelphis>
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dwc:class "Chromadorea" ;
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dwc:family "Rhabditidae" ;
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dwc:genus "Caenorhabditis" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Rhabditida" ;
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dwc:phylum "Nematoda" ;
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dwc:rank "species" ;
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dwc:species "monodelphis" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Caenorhabditis> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Caenorhabditis>
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dwc:class "Chromadorea" ;
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dwc:family "Rhabditidae" ;
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dwc:genus "Caenorhabditis" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Rhabditida" ;
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dwc:phylum "Nematoda" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Rhabditidae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Rhabditidae>
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dwc:class "Chromadorea" ;
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dwc:family "Rhabditidae" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Rhabditida" ;
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dwc:phylum "Nematoda" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Rhabditida> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Rhabditida>
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dwc:class "Chromadorea" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Rhabditida" ;
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dwc:phylum "Nematoda" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Chromadorea> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Chromadorea>
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dwc:class "Chromadorea" ;
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dwc:kingdom "Animalia" ;
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dwc:phylum "Nematoda" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Nematoda> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Nematoda>
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dwc:kingdom "Animalia" ;
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dwc:phylum "Nematoda" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia>
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dwc:kingdom "Animalia" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.1156818>
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dc:description "Fig. 1 Line drawings of Caenorhabditis monodelphis sp. n. a Female,schematic overview.b-i Male, b: Male, lateral;c Anterior end in ventral view; d Tail in lateral view; e Tail in ventral view;f Pharyngeal region;g Gubernaculum in ventral view; h Gubernaculum in lateral view;i Spiculum in lateral view" ;
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fabio:hasRepresentation <https://zenodo.org/record/1156818/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.1156820>
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dc:description "Fig. 2 Caenorhabditis monodelphis sp. n., mature spermatozoa in female post-uterine sac, TEM. Arrows=sperm cells" ;
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fabio:hasRepresentation <https://zenodo.org/record/1156820/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.1156822>
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dc:description "Fig. 3 Light microscopic images of Caenorhabditis monodelphis sp.n. a General overview of a dauer larva;b: Ventral view of female reproductive system;c Detailed ventral view of vulva;d Anterior region of male;e Male tail in ventral view,showing seven ventral (v1-7) and two dorsal (ad,pd) genital papillae.The phasmids are not visible in this plane;f Male tail in lateral view;g Detail of the spicule;h Detail of the gubernaculum" ;
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fabio:hasRepresentation <https://zenodo.org/record/1156822/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.1156824>
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dc:description "Fig. 4 Scanning electron micrographs of Caenorhabditis monodelphis sp.n. a,d Anterior end of female; b,c Anterior end of male; e Female vulva; f,g Lateral field of female and male, respectively; h Female anus and tail; i,j Male bursa with genital papillae indicated;k Detail of cloacal region with postcloacal sensillae;l Detail of male spiculum" ;
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fabio:hasRepresentation <https://zenodo.org/record/1156824/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.1156826>
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dc:description "Fig. 5 Comparison of exon counts in single-copy orthologues between C.monodelphis sp. n. and C.elegans.a Exon counts in 6,174 single-copy orthologous gene pairs.C.monodelphis sp.n.genes which had transcripts with CDS lengths 20% longer (orange) or shorter (black) than C.elegans were defined as outliers.Linear regression lines are shown.Inset:Frequency histogram of log2 ratio of C.monodelphis sp.n.exon counts to C.elegans exon counts.b Comparison of gene structures of five orthologous gene pairs. Three gene pairs were selected at random and a further two were selected because they showed a large divergence in exon count" ;
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fabio:hasRepresentation <https://zenodo.org/record/1156826/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.1156828>
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dc:description "Fig. 6 Phylogenetic relationships of Caenorhabditis species and two outgroup species.Maximum-likelihood based tree from RAxML.Bootstrap support values (1000 replicates) were 100 all branches,unless noted otherwise as numbers on branches.Bayesian Posterior Probabilities were 1 for all branches and are not shown.Coloured boxes indicate supergroups,as defined in [3]. Strain names from which protein sequence were derived are noted" ;
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fabio:hasRepresentation <https://zenodo.org/record/1156828/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.1156830>
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dc:description "Fig. 7 Stemspecies pattern reconstruction.Legend for thecladogram: Black squares indicate the following apomorphies:1) Glottoid apparatus transformed,sectors of metastegostom not spherically protruding;− median bulb prominent oval;− GP3 shifted posterior of cloacal level (only two precloacal papillae present);− GP7–9 clustered;− spiculum blade dorsally velum-like.2) GPs 3–6 clustered,but with small gaps in between; − GP6 thickened, its tip embedded within the bursa velum; − posterior part of bursa velum with “wash-board pattern” (transverse striae);− spiculum shaftwith transverse seam;− dauerlarvae unsheathed.3) Stoma triangular in cross section;− spiculum terminally notched or dentated and with an oval “window” in the blade; − postcloacal sensilla filiform; − shortening of the female tail. 4) Adult cuticle lateral with 3 longitudinal ridges;− sexual dimorphism in cephalic sensilla:they are lost in the female (not projecting to the exterior);− each sector of metastegostom with a triangular flap projecting into the buccal cavity;− precloacal lip anteriorly framed.5) Gymnostom extended and stegostom shortened,sothat only a remnant of the pharyngeal sleeve is present;− gubernaculum distally forked (only presumed for P.tristis)" ;
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fabio:hasRepresentation <https://zenodo.org/record/1156830/files/figure.png> ;
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a fabio:Figure .
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