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243 lines
13 KiB
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@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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<http://treatment.plazi.org/id/634C2847FF9BFFBCFF1CBD94FC6AFD96>
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cito:cites <http://dx.doi.org/10.5281/zenodo.13213350>, <http://dx.doi.org/10.5281/zenodo.13213352>, <http://dx.doi.org/10.5281/zenodo.13213346>, <http://dx.doi.org/10.5281/zenodo.13213354> ;
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dc:creator "Zhou, Si-Xuan; Bao, Dan-Feng; Zhang, Tao; Xiao, Yuan-Pin; Tang, Yuan-Jiang; Jing, Zhang; Lu, Yu-Xi; Shi, Kai-Zhi" ;
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dc:title "Diaporthe berchemiae S. X. Zhou, sp. nov." ;
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trt:deprecates <http://taxon-concept.plazi.org/id/Fungi/Diaporthe_berchemiae_Zhou_>, <http://taxon-concept.plazi.org/id/Fungi/Diaporthe_jinxiu_X_>, <http://taxon-concept.plazi.org/id/Fungi/Diaporthe_nanjingensis_Zhu_>, <http://taxon-concept.plazi.org/id/Fungi/Diaporthe_berchemiae_Wang_2021>, <http://taxon-concept.plazi.org/id/Fungi/Diaporthe_berchemiae_Wan_2023> ;
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trt:publishedIn <http://dx.doi.org/10.11646/phytotaxa.640.1.1> ;
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a trt:Treatment .
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<http://dx.doi.org/10.11646/phytotaxa.640.1.1>
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bibo:endPage "15" ;
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bibo:issue "1" ;
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bibo:journal "Phytotaxa" ;
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bibo:pubDate "2024-03-07" ;
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bibo:startPage "1" ;
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bibo:volume "640" ;
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dc:creator "Zhou, Si-Xuan; Bao, Dan-Feng; Zhang, Tao; Xiao, Yuan-Pin; Tang, Yuan-Jiang; Jing, Zhang; Lu, Yu-Xi; Shi, Kai-Zhi" ;
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dc:date "2024" ;
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dc:title "Two new endophytic fungi of Colletotrichum and Diaporthe isolated from Berchemia polyphylla var. leioclada in Guizhou Province, China" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.13213350>, <http://dx.doi.org/10.5281/zenodo.13213352>, <http://dx.doi.org/10.5281/zenodo.13213346>, <http://dx.doi.org/10.5281/zenodo.13213354> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Fungi/Diaporthe_berchemiae_Zhou_2024>
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# Warning: Using document metadata for authority year ;
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dwc:authority "S.X. Zhou" ;
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dwc:authorityName "S. X. Zhou" ;
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dwc:class "Sordariomycetes" ;
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dwc:family "Diaporthaceae" ;
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dwc:genus "Diaporthe" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Diaporthales" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Zhou, 2024" ;
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dwc:species "berchemiae" ;
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rdfs:seeAlso <https://www.catalogueoflife.org/data/taxon/39T8Z> ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Fungi/Diaporthe_berchemiae> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Fungi/Diaporthe_berchemiae_Zhou_>
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dwc:authority "S.X. Zhou" ;
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dwc:authorityName "S. X. Zhou" ;
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dwc:class "Sordariomycetes" ;
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dwc:family "Diaporthaceae" ;
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dwc:genus "Diaporthe" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Diaporthales" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Zhou" ;
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dwc:species "berchemiae" ;
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a dwcFP:TaxonConcept .
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dwc:authority "X.H. Wang & G.P. Wang" ;
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dwc:class "Sordariomycetes" ;
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dwc:family "Diaporthaceae" ;
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dwc:genus "Diaporthe" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "X.Wang & G.Wang" ;
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dwc:species "jinxiu" ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Fungi/Diaporthe_nanjingensis_Zhu_>
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dwc:authority "L. H. Zhu, Y. Wan & D. W. Li" ;
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dwc:class "Sordariomycetes" ;
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dwc:family "Diaporthaceae" ;
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dwc:genus "Diaporthe" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Diaporthales" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Zhu, Wan & Li" ;
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dwc:species "nanjingensis" ;
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rdfs:seeAlso <https://www.catalogueoflife.org/data/taxon/39T8Z> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Fungi/Diaporthe_berchemiae_Wang_2021>
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dwc:authority "(Wang et al. 2021)" ;
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dwc:baseAuthorityName "Wang" ;
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dwc:baseAuthorityYear "2021" ;
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dwc:class "Sordariomycetes" ;
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dwc:family "Diaporthaceae" ;
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dwc:genus "Diaporthe" ;
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dwc:kingdom "Fungi" ;
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dwc:phylum "Ascomycota" ;
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dwc:scientificNameAuthorship "(Wang, 2021)" ;
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dwc:species "berchemiae" ;
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a dwcFP:TaxonConcept .
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dwc:authority "(Wan et al. 2023)" ;
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dwc:baseAuthorityName "Wan" ;
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dwc:baseAuthorityYear "2023" ;
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dwc:class "Sordariomycetes" ;
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dwc:scientificNameAuthorship "(Wan, 2023)" ;
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dwc:species "berchemiae" ;
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dwc:family "Diaporthaceae" ;
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dwc:family "Diaporthaceae" ;
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dwc:family "Diaporthaceae" ;
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dwc:kingdom "Fungi" ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Diaporthe_nanjingensis>
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dwc:class "Sordariomycetes" ;
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dwc:family "Diaporthaceae" ;
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dwc:genus "Diaporthe" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Diaporthales" ;
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dwc:phylum "Ascomycota" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Diaporthe> ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.13213350>
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dc:description "FIGURE 4. Diaporthe berchemiae (ex-type culture, GMBCC 20000). a, b Front and reverse colony on MEA. c, d Conidiomata on PDA. e–g Conidiophores. h–k Conidiogenous cells and conidia. l–o Alpha conidia. p-s Beta conidia. Scale bars: e–g, i–k = 10 μm; h, l–s = 5 μm." ;
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fabio:hasRepresentation <https://zenodo.org/record/13213350/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.13213352>
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dc:description "FIGURE 5. Phylogenetic tree based on RAxML analyses of a combined ITS, TUB2, CAL, HIS, TEF1-α dataset, including sequences of our strain and a selection of related Diaporthe spp., restricted according to the phylogenetic study of Supplementary Material (Figure S2). Diaporthe caulivora (CBS 127268) was used as the outgroup. The combined gene analysis included 13 strains with 2409 characters after aligned, including gaps (ITS: 560bp, TUB2: 526bp, CAL: 506bp, HIS3: 494bp, TEF1-α: 323bp). The RAxML analysis of the combined dataset yielded the best scoring tree with a final ML optimization likelihood value of -7651.550919.The matrix had 572 distinct alignment patterns, with 23.26% undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.203920, C = 0.334775, G = 0.247441, T = 0.213864; substitution rates AC = 1.486536, AG = 3.694646, AT = 1.459400, CG = 1.231075, CT = 5.843934, GT = 1.000000; gamma distribution shape parameter α = 0.257986. Bootstrap support values for RAxML equal to or greater than 70% and Bayesian posterior probabilities equal to or greater than 0.90 are given at each node. The new isolate is shown in red and bold." ;
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fabio:hasRepresentation <https://zenodo.org/record/13213352/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.13213346>
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dc:description "FIGURE 2. Phylogenetic tree of Maximum Likelihood analyses of Colletotrichum gloeosporioides species complex and its closely related species (including sequences of our strain and a selection of related Colletotrichum spp.,), restricted according to the phylogenetic study of Supplementary Material (Figure S1). Colletotrichum hippeastri (CBS 125376) and C. boninense CBS 123755 were used as outgroup taxa. The tree was built using concatenated sequences of ITS, ACT, CHS-1, GADPH, and TUB2 datasets and the tree topology of the RAxML and Bayesian analyses are similar. The combined gene analysis included 86 strains with 2152 characters after aligned, including gaps (ITS: 593bp, ACT: 282bp, CHS-1: 299bp, GADPH: 277bp, and TUB2: 701bp). The RAxML analysis of the combined dataset yielded the best scoring tree with a final ML optimization likelihood value of -15857.131621. The matrix had 1198 distinct alignment patterns, with 23.12% undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.229650, C = 0.299082, G = 0.241413, T = 0.229855; substitution rates AC = 1.009331, AG = 2.892663, AT = 1.227390, CG = 0.965860, CT = 4.527049, GT = 1.000000; gamma distribution shape parameter α = 0.449663. Bootstrap support values for RAxML equal to or greater than 70% and Bayesian posterior probabilities equal to or greater than 0.90 are given at each node. The new isolate is shown in red and bold." ;
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fabio:hasRepresentation <https://zenodo.org/record/13213346/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.13213354>
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dc:description "FIGURE 6. Results of the PHI test of Diaporthe berchemiae and closely related species using both LogDet transformation and splits decomposition. The PHI test results (Φw) <0.05 indicate significant recombination within the dataset. The new taxa are in red." ;
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fabio:hasRepresentation <https://zenodo.org/record/13213354/files/figure.png> ;
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a fabio:Figure .
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<http://tb.plazi.org/GgServer/dwcaRecords/634C2847FF9BFFBCFF1CBD94FC6AFD96.mc.5B8D930CFF9BFFB2FF1CBE04FE74F9CB>
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dwc:catalogNumber "KUN-HKAS 131985" ;
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dwc:typeStatus "holotype" ;
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trt:httpUri <https://treatment.plazi.org/id/634C2847FF9BFFBCFF1CBD94FC6AFD96#5B8D930CFF9BFFB2FF1CBE04FE74F9CB> ;
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