104 lines
5.7 KiB
Turtle
104 lines
5.7 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/03F34A59101BFFAEFF51FCEF7D2752B5>
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cito:cites <http://dx.doi.org/10.5281/zenodo.6520365>, <http://dx.doi.org/10.5281/zenodo.6520363> ;
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dc:creator "Yang, Erfu; Tibpromma, Saowaluck; Dai, Dongqin; Promputtha, Itthayakorn; Mortimer, Peter E.; Karunarathna, Samantha C." ;
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dc:title "Colletotrichum jiangxiense F. Liu and L. Cai, Persoonia" ;
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trt:publishedIn <http://dx.doi.org/10.11646/phytotaxa.545.1.3> ;
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trt:treatsTaxonName <http://taxon-name.plazi.org/id/Fungi/Colletotrichum_jiangxiense> ;
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a trt:Treatment .
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<http://dx.doi.org/10.11646/phytotaxa.545.1.3>
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bibo:endPage "56" ;
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bibo:issue "1" ;
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bibo:journal "Phytotaxa" ;
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bibo:pubDate "2022-05-05" ;
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bibo:startPage "37" ;
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bibo:volume "545" ;
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dc:creator "Yang, Erfu; Tibpromma, Saowaluck; Dai, Dongqin; Promputtha, Itthayakorn; Mortimer, Peter E.; Karunarathna, Samantha C." ;
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dc:date "2022" ;
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dc:title "Three interesting fungal species associated with the Asian House Gecko in Kunming, China" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.6520365>, <http://dx.doi.org/10.5281/zenodo.6520363> ;
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a fabio:JournalArticle .
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<http://taxon-name.plazi.org/id/Fungi/Colletotrichum_jiangxiense>
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dwc:class "Sordariomycetes" ;
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dwc:family "Glomerellaceae" ;
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dwc:genus "Colletotrichum" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Glomerellales" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "species" ;
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dwc:species "jiangxiense" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Colletotrichum> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Colletotrichum>
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dwc:class "Sordariomycetes" ;
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dwc:family "Glomerellaceae" ;
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dwc:genus "Colletotrichum" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Glomerellales" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Glomerellaceae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Glomerellaceae>
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dwc:class "Sordariomycetes" ;
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dwc:family "Glomerellaceae" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Glomerellales" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Glomerellales> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Glomerellales>
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dwc:class "Sordariomycetes" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Glomerellales" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Sordariomycetes> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Sordariomycetes>
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dwc:class "Sordariomycetes" ;
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dwc:kingdom "Fungi" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Ascomycota> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Ascomycota>
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dwc:kingdom "Fungi" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi>
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dwc:kingdom "Fungi" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.6520365>
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dc:description "FIGURE 7. Colletotrichum jiangxiense (KUMCC 21-0466). a, b Colonies on PDA. c Hyphae. d Hyphae stained by cotton blue reagent. e, f Conidophores connected with conidia (f: stained by congo red reagent). g–i Conidia (g: stained by cotton blue reagent). Scale bars: c, d = 20 μm, e–i = 10 μm." ;
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fabio:hasRepresentation <https://zenodo.org/record/6520365/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.6520363>
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dc:description "FIGURE 6. Phylogram generated from maximum likelihood analysis based on a combined ITS, HIS, CAL, ACT, tub2 and GPDH sequence datasets. Related sequences were taken from Diao et al. (2017) and Chaiwan et al. (2021). The 52 strains are included in the combined gene analyses, 2882 total characters including gaps (ITS: 1–579 bp, HIS: 580–874 bp, CAL: 875–1610 bp, ACT: 1611–1888 bp, tub2: 1889–2602 bp, GPDH: 2603–2882). Tree topology of the ML analysis was similar to the BI. The matrix had distinct alignment patterns, with the final ML optimization likelihood value of -14018.222367 (ln). All free model parameters were estimated using the RAxML model, with 1867 distinct alignment patterns and 15.05% of undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.227166, C = 0.283924, G = 0.257262, T = 0.216566, with substitution rates AC = 1.035930, AG = 0.298823, AT = 0.248992, CG = 0.225019, CT = 4.115498, GT = 1.000000. The gamma distribution shape parameter alpha = 0.904631 and the Tree- Length = 0.821909. The final average standard deviation of split frequencies at the end of total MCMC generations calculated as 0.009613 in BI analysis. The species determined in this study are indicated in red. Bootstrap values equal to or greater than 70% (ML, left) and Bayesian posterior probabilities (BI, right) equal to or greater than 0.95 are given at the nodes. Hyphens (-) represent support values less than 70% in ML/0.95 in BI." ;
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fabio:hasRepresentation <https://zenodo.org/record/6520363/files/figure.png> ;
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a fabio:Figure .
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