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152 lines
12 KiB
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@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/03D987EAFFB0C332FF6212BFFCD3BB98>
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cito:cites <http://dx.doi.org/10.5281/zenodo.1041355>, <http://dx.doi.org/10.5281/zenodo.1041353>, <http://dx.doi.org/10.5281/zenodo.1041357>, <http://dx.doi.org/10.5281/zenodo.1041359> ;
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dc:creator "Alexander Nater; Maja P. Mattle-Greminger; Anton Nurcahyo; Matthew G. Nowak; Marc de Manuel; Tariq Desai; Colin Groves; Marc Pybus; Tugce Bilgin Sonay; Christian Roos; Adriano R. Lameira; Serge A. Wich; James Askew; Marina Davila-Ross; Gabriella Fredriksson; Guillem de Valles; Ferran Casals; avier Prado-Martinez; Benoit Goossens; Ernst J. Verschoor; Kristin S. Warren; Ian Singleton; David A. Marques; Joko Pamungkas; Dyah Perwitasari-Farajallah; Puji Rianti; Augustine Tuuga; Ivo G. Gut; Marta Gut; Pablo Orozco-terWengel; Carel P. van Schaik; Jaume Bertranpetit; Maria Anisimova; Aylwyn Scally; Tomas Marques-Bonet; Erik Meijaard; Michael Krüzen" ;
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dc:title "Pongo tapanuliensis Alexander Nater & Maja P. Mattle-Greminger & nton Nurcahyo & Matthew G. Nowak & Marc de Manuel & Tariq Desai & Colin Groves & Marc Pybus & Tugce Bilgin Sonay & Christian Roos & Adriano R. Lameira & Serge A. Wich & James Askew & Marina Davila-Ross & Gabriella Fredriksson & Guillem de Valles & Ferran Casals & avier Prado-Martinez & Benoit Goossens & Ernst J. Verschoor & Kristin S. Warren & Ian Singleton 2017, sp. nov." ;
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dwc:basisOfRecord <https://www.gbif.org/occurrence/3396424301>, <https://www.gbif.org/occurrence/3395934301> ;
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trt:definesTaxonConcept <http://taxon-concept.plazi.org/id/Animalia/Pongo_tapanuliensis_Nater_2017> ;
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trt:publishedIn <http://dx.doi.org/10.1016/j.cub.2017.09.047> ;
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a trt:Treatment .
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<http://dx.doi.org/10.1016/j.cub.2017.09.047>
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bibo:endPage "40" ;
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bibo:journal "Current Biology" ;
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bibo:pubDate "2017-11-01" ;
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bibo:startPage "1" ;
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bibo:volume "27" ;
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dc:creator "Alexander Nater; Maja P. Mattle-Greminger; Anton Nurcahyo; Matthew G. Nowak; Marc de Manuel; Tariq Desai; Colin Groves; Marc Pybus; Tugce Bilgin Sonay; Christian Roos; Adriano R. Lameira; Serge A. Wich; James Askew; Marina Davila-Ross; Gabriella Fredriksson; Guillem de Valles; Ferran Casals; avier Prado-Martinez; Benoit Goossens; Ernst J. Verschoor; Kristin S. Warren; Ian Singleton; David A. Marques; Joko Pamungkas; Dyah Perwitasari-Farajallah; Puji Rianti; Augustine Tuuga; Ivo G. Gut; Marta Gut; Pablo Orozco-terWengel; Carel P. van Schaik; Jaume Bertranpetit; Maria Anisimova; Aylwyn Scally; Tomas Marques-Bonet; Erik Meijaard; Michael Krüzen" ;
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dc:date "2017" ;
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dc:title "Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.1041355>, <http://dx.doi.org/10.5281/zenodo.1041353>, <http://dx.doi.org/10.5281/zenodo.1041357>, <http://dx.doi.org/10.5281/zenodo.1041359> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Animalia/Pongo_tapanuliensis_Nater_2017>
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dwc:authority "Alexander Nater & Maja P. Mattle-Greminger & nton Nurcahyo & Matthew G. Nowak & Marc de Manuel & Tariq Desai & Colin Groves & Marc Pybus & Tugce Bilgin Sonay & Christian Roos & Adriano R. Lameira & Serge A. Wich & James Askew & Marina Davila-Ross & Gabriella Fredriksson & Guillem de Valles & Ferran Casals & avier Prado-Martinez & Benoit Goossens & Ernst J. Verschoor & Kristin S. Warren & Ian Singleton, 2017" ;
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dwc:authorityName "Alexander Nater & Maja P. Mattle-Greminger & nton Nurcahyo & Matthew G. Nowak & Marc de Manuel & Tariq Desai & Colin Groves & Marc Pybus & Tugce Bilgin Sonay & Christian Roos & Adriano R. Lameira & Serge A. Wich & James Askew & Marina Davila-Ross & Gabriella Fredriksson & Guillem de Valles & Ferran Casals & avier Prado-Martinez & Benoit Goossens & Ernst J. Verschoor & Kristin S. Warren & Ian Singleton" ;
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dwc:authorityYear "2017" ;
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dwc:class "Mammalia" ;
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dwc:family "Hominidae" ;
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dwc:genus "Pongo" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Primates" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Alexander Nater, Maja Mattle-Greminger, nton Nurcahyo, Matthew Nowak, Marc de Manuel, Tariq Desai, Colin Groves, Marc Pybus, Tugce Bilgin Sonay, Christian Roos, Adriano Lameira, Serge Wich, James Askew, Marina Davila-Ross, Gabriella Fredriksson, Guillem de Valles, Ferran Casals, avier Prado-Martinez, Benoit Goossens, Ernst Verschoor, Kristin Warren & Ian Singleton, 2017" ;
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dwc:species "tapanuliensis" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Pongo_tapanuliensis> ;
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a dwcFP:TaxonConcept .
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<http://taxon-name.plazi.org/id/Animalia/Pongo_tapanuliensis>
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dwc:class "Mammalia" ;
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dwc:family "Hominidae" ;
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dwc:genus "Pongo" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Primates" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:species "tapanuliensis" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Pongo> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Pongo>
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dwc:class "Mammalia" ;
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dwc:family "Hominidae" ;
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dwc:genus "Pongo" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Primates" ;
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dwc:phylum "Chordata" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Hominidae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Hominidae>
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dwc:class "Mammalia" ;
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dwc:family "Hominidae" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Primates" ;
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dwc:phylum "Chordata" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Primates> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Primates>
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dwc:class "Mammalia" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Primates" ;
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dwc:phylum "Chordata" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Mammalia> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Mammalia>
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dwc:class "Mammalia" ;
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dwc:kingdom "Animalia" ;
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dwc:phylum "Chordata" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Chordata> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Chordata>
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dwc:kingdom "Animalia" ;
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dwc:phylum "Chordata" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia>
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dwc:kingdom "Animalia" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.1041355>
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dc:description "Figure 2. Distribution, Genomic Diversity, and Population Structure of the Genus Pongo (A) Sampling areas across the current distribution of orangutans. The contour indicates the extent of the exposed Sunda Shelf during the Last Glacial Maximum. The black rectangle delimits the area shown in Figure 1 A. n indicates the number of sequenced individuals. See also Table S 4. (B) PCA of genomic diversity in Pongo. Axis labels show the percentages of the total variance explained by the first two principal components. Colored bars in the insert represent the distribution of nucleotide diversity in genome-wide 1 - Mb windows across sampling areas. (C) Bayesian clustering analysis of population structure using the program ADMIXTURE. Each vertical bar depicts an individual, with colors representing the inferred ancestry proportions with different assumed numbers of genetic clusters (K, horizontal sections)." ;
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fabio:hasRepresentation <https://zenodo.org/record/1041355/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.1041353>
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dc:description "Figure 1. Morphological Evidence Supporting a New Orangutan Species (A) Current distribution of Pongo tapanuliensis on Sumatra. The holotype locality is marked with a red star. The area shown in the map is indicated in Figure 2 A. (B) Holotype skull and mandible of P. tapanuliensis from a recently deceased individual from Batang Toru. See also Figure S 1 and Tables S 1 and S 2. (C) Violin plots of the first seven principal components of 26 cranio-mandibular morphological variables of eight north Sumatran P. abelii and 19 Bornean P. pygmaeus individuals of similar developmental state as the P. tapanuliensis holotype skull (black horizontal lines). See also Figure S 2." ;
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fabio:hasRepresentation <https://zenodo.org/record/1041353/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.1041357>
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dc:description "Figure 3. Demographic History and Gene Flow in Pongo (A) Model selection by ABC of plausible colonization histories of orangutans on Sundaland. The ABC analyses are based on the comparison of 3,000 non-coding 2 - kb loci randomly distributed across the genome with corresponding data simulated under the different demographic models. The numbers in the black boxes indicate the model’s posterior probability. NT, Sumatran populations north of Lake Toba; ST, the Sumatran population of Batang Toru south of Lake Toba; BO, Bornean populations. (B) ABC parameter estimates based on the full demographic model with colonization pattern inferred in (A). Numbers in gray rectangles represent point estimates of effective population size (Ne). Arrows indicate gene flow among populations, and numbers above the arrows represent point estimates of numbers of migrants per generation. See also Table S 5. (C) Relative cross-coalescent rate (RCCR) analysis for between-species pairs of phased high-coverage genomes. A RCCR close to 1 indicates extensive gene flow between species, and a ratio close to 0 indicates genetic isolation between species pairs. The x axis shows time scaled in years, assuming a generation time of 25 years and an autosomal mutation rate of 1.5 3 10 8 per site per generation. See also Figure S" ;
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fabio:hasRepresentation <https://zenodo.org/record/1041357/files/figure.svg> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.1041359>
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dc:description "Figure 4. Sex-Specific Evolutionary History of Orangutans Bayesian phylogenetic trees for (A) mitochondrial genomes and (B) Y chromosomes. The mitochondrial tree is rooted with a human and a central chimpanzee sequence and the Y chromosome tree with a human sequence (not shown). ** Posterior probability = 1.00. (C) Genotype-sharing matrix for mitogenomes (above the diagonal) and Y chromosomes (below the diagonal) for all analyzed male orangutans. A value of 1 indicates that two males have identical genotypes at all polymorphic sites; a value of 0 means that they have different genotypes at all variable positions" ;
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fabio:hasRepresentation <https://zenodo.org/record/1041359/files/figure.png> ;
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a fabio:Figure .
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<https://www.gbif.org/occurrence/3396424301>
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dwc:catalogNumber "MZB39182" ;
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dwc:collectionCode "Museum Zoologicum Bogoriense" ;
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dwc:eventDate "2013-11" ;
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dwc:locality "near Sugi Tonga, Marancar, Tapanuli (Batang Toru) Forest Complex" ;
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dwc:typeStatus "holotype" ;
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dwc:verbatimLatitude "1.598361" ;
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dwc:verbatimLongitude "99.27681" ;
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trt:gbifOccurrenceId "3396424301" ;
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trt:httpUri <http://morphobank.org/permalink/?P2591> ;
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a dwc:MaterialCitation .
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<https://www.gbif.org/occurrence/3395934301>
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dwc:catalogNumber "(P2591, M435788, P2591, M435790" ;
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dwc:collectionCode "M, P" ;
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dwc:locality "North Tapanuli District, North Sumatra" ;
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dwc:typeStatus "paratype" ;
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dwc:verbatimLatitude "1.6858612" ;
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dwc:verbatimLongitude "98.99391" ;
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trt:gbifOccurrenceId "3395934301" ;
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a dwc:MaterialCitation .
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