129 lines
7.8 KiB
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129 lines
7.8 KiB
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@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/03AD87AFFFF8FFB5120FFDB23C39FA3A>
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cito:cites <http://dx.doi.org/10.5281/zenodo.8291068>, <http://dx.doi.org/10.5281/zenodo.8291070>, <http://dx.doi.org/10.5281/zenodo.8291072>, <http://dx.doi.org/10.5281/zenodo.8291077>, <http://dx.doi.org/10.5281/zenodo.8291079>, <http://dx.doi.org/10.5281/zenodo.8291081>, <http://dx.doi.org/10.5281/zenodo.8291083> ;
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dc:creator "Xu, Jingwei; Peng, Guanzu; Xu, Jinkun; Li, Yi; Tong, Li; Yang, Dong" ;
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dc:title "Paeonia lactiflora subsp. pinene" ;
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trt:publishedIn <http://dx.doi.org/10.1016/j.phytochem.2020.112573> ;
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trt:treatsTaxonName <http://taxon-name.plazi.org/id/Plantae/Paeonia_lactiflora> ;
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a trt:Treatment .
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<http://dx.doi.org/10.1016/j.phytochem.2020.112573>
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bibo:endPage "10" ;
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bibo:journal "Phytochemistry" ;
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bibo:pubDate "2021-01-31" ;
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bibo:series "112573" ;
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bibo:startPage "1" ;
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bibo:volume "181" ;
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dc:creator "Xu, Jingwei; Peng, Guanzu; Xu, Jinkun; Li, Yi; Tong, Li; Yang, Dong" ;
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dc:date "2021" ;
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dc:title "Probing of the plasticity of the active site in pinene synthase elucidates its potential evolutionary mechanism" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.8291068>, <http://dx.doi.org/10.5281/zenodo.8291070>, <http://dx.doi.org/10.5281/zenodo.8291072>, <http://dx.doi.org/10.5281/zenodo.8291077>, <http://dx.doi.org/10.5281/zenodo.8291079>, <http://dx.doi.org/10.5281/zenodo.8291081>, <http://dx.doi.org/10.5281/zenodo.8291083> ;
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a fabio:JournalArticle .
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<http://taxon-name.plazi.org/id/Plantae/Paeonia_lactiflora>
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dwc:class "Magnoliopsida" ;
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dwc:family "Paeoniaceae" ;
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dwc:genus "Paeonia" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Saxifragales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "species" ;
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dwc:species "lactiflora" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Paeonia> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Paeonia>
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dwc:class "Magnoliopsida" ;
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dwc:family "Paeoniaceae" ;
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dwc:genus "Paeonia" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Saxifragales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Paeoniaceae> ;
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<http://taxon-name.plazi.org/id/Plantae/Paeoniaceae>
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dwc:class "Magnoliopsida" ;
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dwc:family "Paeoniaceae" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Saxifragales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "family" ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Saxifragales>
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dwc:class "Magnoliopsida" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Saxifragales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Magnoliopsida> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Magnoliopsida>
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dwc:class "Magnoliopsida" ;
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dwc:kingdom "Plantae" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "class" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae>
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dwc:kingdom "Plantae" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.8291068>
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dc:description "Fig. 1. a, The proposed reaction mechanism for the synthesis of limonene, pinene and sabinene. b, The structural model of pinene synthase docked with the terpinyl (left), pinyl (middle) and thujyl (right) cations. Carbocations are colored in magenta (terpinyl), wheat (pinyl) and cyan (thujyl). Other atoms are colored according to their types (red: oxygen; yellow: carbon; blue: nitrogen; orange: phosphorus; green: magnesium). (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)" ;
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fabio:hasRepresentation <https://zenodo.org/record/8291068/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8291070>
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dc:description "Fig. 2. Converting pinene synthase to sabinene synthase by mutations on 482 position. Chromatograms in a, b, c, d and e show the GC-MS analysis of terpene products for WT, F482A, F482I, F482V and F482T, respectively. The x-axis is the retention time and the y-axis is the relative abundance of each species. The numbers in each peak correspond to α-pinene (1), sabinene (2) and limonene (3)." ;
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fabio:hasRepresentation <https://zenodo.org/record/8291070/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8291072>
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dc:description "Fig. 3. Hybrid quadrupole-orbitrap GC-MS/MS. a shows the chromatogram of terpene products of F482L. The elution peak corresponding to sabinene is labeled. The mass spectrum of the product eluted at 9.29 min from a is shown in b. The mass spectrum of the standard sabinene is shown in c." ;
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fabio:hasRepresentation <https://zenodo.org/record/8291072/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8291077>
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dc:description "Fig. 4. Conformational differences in the pinyl cation in WT and F482Y as demonstrated by molecular dynamics simulation. The structures of WT and F482Y are superimposed. Results after 0, 1 and 2 ns of simulation are shown in a, d and c, respectively. Carbon in WT is colored in yellow and carbon in F482Y is colored in green. Oxygen is colored in red. Nitrogen is colored in blue. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)" ;
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fabio:hasRepresentation <https://zenodo.org/record/8291077/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8291079>
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dc:description "Fig. 5. The effect of the S491A mutation. Chromatograms in a, b and c show the GC-MS analysis of terpene production for S491A, F482A/S491A, and F482I/S491A, respectively. The x-axis is the retention time and the y-axis is the relative abundance of each species. The numbers in each peak correspond to α-pinene (1), sabinene (2) and limonene (3). d shows the overall activity and the percentage of sabinene within total products produced by F482A, F482A/S491A, F482I and F482I/S491A. The asterisk indicates P <0.05." ;
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fabio:hasRepresentation <https://zenodo.org/record/8291079/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8291081>
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dc:description "Fig. 6. S491A mutation increases the rigidity of the active pocket when it binds the pinyl cation. RMSD values of the active site residues between WT and S491A in complex with the pinyl cation (a), terpinyl cation (b) and thujyl cation (c) are compared." ;
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fabio:hasRepresentation <https://zenodo.org/record/8291081/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8291083>
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dc:description "Fig. 7. The RMSD profiles of the region with high (RMSD H) and low (RMSD L) mobility from the simulation of WT (a), S491A (b) and F482/S491A (c) in complex with the pinyl cation." ;
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fabio:hasRepresentation <https://zenodo.org/record/8291083/files/figure.png> ;
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a fabio:Figure .
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