124 lines
8.2 KiB
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124 lines
8.2 KiB
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@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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<http://treatment.plazi.org/id/03D71B6CFFFEFB63633EFD11FAF6C369>
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cito:cites <http://dx.doi.org/10.5281/zenodo.8293719>, <http://dx.doi.org/10.5281/zenodo.8293721>, <http://dx.doi.org/10.5281/zenodo.8293723>, <http://dx.doi.org/10.5281/zenodo.8293725>, <http://dx.doi.org/10.5281/zenodo.8293727>, <http://dx.doi.org/10.5281/zenodo.8293729> ;
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dc:creator "Cuadra, Pedro; Guajardo, Joselin; Carrasco-Orellana, Cristian; Stappung, Yazmina; Fajardo, Víctor; Herrera, Raúl" ;
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dc:title "Deschampsia antarctica É.Desv." ;
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trt:augmentsTaxonConcept <http://taxon-concept.plazi.org/id/Plantae/Deschampsia_antarctica_%C3%89_> ;
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trt:publishedIn <http://dx.doi.org/10.1016/j.phytochem.2019.112179> ;
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a trt:Treatment .
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<http://dx.doi.org/10.1016/j.phytochem.2019.112179>
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bibo:endPage "10" ;
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bibo:journal "Phytochemistry" ;
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bibo:pubDate "2020-01-31" ;
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bibo:series "112179" ;
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bibo:startPage "1" ;
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bibo:volume "169" ;
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dc:creator "Cuadra, Pedro; Guajardo, Joselin; Carrasco-Orellana, Cristian; Stappung, Yazmina; Fajardo, Víctor; Herrera, Raúl" ;
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dc:date "2020" ;
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dc:title "Differential expression after UV-B radiation and characterization of chalcone synthase from the Patagonian hairgrass Deschampsia antarctica" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.8293719>, <http://dx.doi.org/10.5281/zenodo.8293721>, <http://dx.doi.org/10.5281/zenodo.8293723>, <http://dx.doi.org/10.5281/zenodo.8293725>, <http://dx.doi.org/10.5281/zenodo.8293727>, <http://dx.doi.org/10.5281/zenodo.8293729> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Plantae/Deschampsia_antarctica_%C3%89_>
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dwc:ID-ENA "159298" ;
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dwc:authorityName "É.Desv." ;
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dwc:class "Liliopsida" ;
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dwc:family "Poaceae" ;
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dwc:genus "Deschampsia" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Poales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "É.Desv." ;
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dwc:species "antarctica" ;
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rdfs:seeAlso <https://www.catalogueoflife.org/data/taxon/34Z4S> ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Plantae/Deschampsia_antarctica> ;
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a dwcFP:TaxonConcept .
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<http://taxon-name.plazi.org/id/Plantae/Deschampsia_antarctica>
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dwc:class "Liliopsida" ;
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dwc:family "Poaceae" ;
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dwc:genus "Deschampsia" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Poales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "species" ;
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dwc:species "antarctica" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Deschampsia> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Deschampsia>
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dwc:genus "Deschampsia" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Poaceae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Poaceae>
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dwc:family "Poaceae" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Poales> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Poales>
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dwc:order "Poales" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Liliopsida> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Liliopsida>
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dwc:class "Liliopsida" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Tracheophyta> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Tracheophyta>
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dwc:phylum "Tracheophyta" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae>
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dwc:kingdom "Plantae" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.8293719>
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dc:description "Fig. 1. Multiple alignment of amino acids for monocotyledons sequences: H. vulgare HvCHS1 (ID: P26018.1), H. vulgare HvCHS2 (ID: Q96562.1), O. sativa subsp. japonica OsjCHS1(ID: XP_015618054.1), O. sativa subsp. japonica OsjCHS2(ID: XP_015646206.1), O. sativa subsp. indica OsiCHS1 (ID: A2ZEX7.1), Sorghum bicolor SbCHS1(ID: XP_002450874.1), S. bicolor SbCHS2(ID: XP_002450871.1), S. bicolor SbCHS3 (ID: XP_002450875.1), S. bicolor SbCHS4(ID: XP_002450870.1), S. bicolor SbCHS5(ID: XP_002449616.1), S. bicolor SbCHS6 (ID: XP_002450877.1), S. bicolor SbCHS7(ID: XP_002450876.1), Z. mays ZmCHS1 (ID: P24824.1), Z. mays ZmCHS2 (ID: NP_001142246.1). Arrows show active site residues, described for chalcone synthase (Cys 167, Phe 218, His 306 and Asn 339). N-terminal domain and Cterminal domain are shown." ;
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fabio:hasRepresentation <https://zenodo.org/record/8293719/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8293721>
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dc:description "Fig. 2. Phylogenetic analysis of full-length predicted DaCHS protein compared with CHS proteins from: H. vulgare HvCHS1 (ID: P26018.1), H. vulgare HvCHS2 (ID: Q96562.1), O. sativa subsp. japonica OsjCHS1 (ID: XP_015618054.1), O. sativa subsp. japonica OsjCHS2(ID: XP_015646206.1), O. sativa subsp. indica OsiCHS1 (ID: A2ZEX7.1), S. bicolor SbCHS1(ID: XP_002450874.1), S. bicolor SbCHS2(ID: XP_002450871.1), S. bicolor SbCHS3 (ID: XP_002450875.1), S. bicolor SbCHS4(ID: XP_002450870.1), S. bicolor SbCHS5(ID: XP_002449616.1), S. bicolor SbCHS6 (ID: XP_002450877.1), S. bicolor SbCHS7(ID: XP_002450876.1), Z. mays ZmCHS1 (ID: P24824.1), Z. mays ZmCHS2 (ID: NP_001142246.1). Acetate kinase was used as the outlier (ID: WP_012677240.1). Numbers at each fork in the tree indicate the times that gene groups were clustered together in the 5000 bootstrap replicates." ;
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fabio:hasRepresentation <https://zenodo.org/record/8293721/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8293723>
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dc:description "Fig. 3. Model of DaCHS structure. The 3D model structure of DaCHS shows 13 β sheets (yellow), 12 α helices (purple) and 8 α helices 310 (blue) and 23 loops. The center core is shown where catalytic residues are positioned. Enlargement of the active site shows the three catalytic residues (Cys 167, His 306 and Asn 339) and the two structural Phe residues (Phe 218, Phe 268). (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)" ;
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fabio:hasRepresentation <https://zenodo.org/record/8293723/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8293725>
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dc:description "Fig. 4. Lineal alignment and secondary structure comparison between DaCHS and the template (code 4YJY). Sequences have a high homology index (92% of sequence identity)." ;
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fabio:hasRepresentation <https://zenodo.org/record/8293725/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8293727>
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dc:description "Fig. 5. A) Structural alignment between DaCHS (red) and crystal 4YJY (cyan). The RMSD value was 0.25 Å. B) Molecular dynamics simulation analysis. The MDS was carried out using NAMD software and the trajectory analysis was carried out by using VMD software.C) Proteins' structural stability in the function of RMSD, during 2 ns of MDS.RMSF plots of DaCHS (red) and 4YJY chain A (blue) during MD simulation are compared.The greatest fluctuations are found in the loops region of proteins." ;
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fabio:hasRepresentation <https://zenodo.org/record/8293727/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8293729>
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dc:description "Fig. 6. Effect of UV-B radiation on DaCHS gene. Control plants were maintained in a growth chamber with a PAR regime (16/8 h). Treated plants underwent the same PAR regime daily, supplemented with UV-B radiation for 9 h. Measurements were made at 3.5 and 7 days. One-way ANOVA from Statistica 4.0 software was used for statistical analysis. Bars indicate standard deviation and letters indicate statistical difference (p ≤ 0.05)." ;
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fabio:hasRepresentation <https://zenodo.org/record/8293729/files/figure.png> ;
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a fabio:Figure .
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