92 lines
6.1 KiB
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92 lines
6.1 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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<http://treatment.plazi.org/id/03A7326DFFEF833443F4FC17FC52FC20>
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cito:cites <http://dx.doi.org/10.5281/zenodo.262695>, <http://dx.doi.org/10.5281/zenodo.262696>, <http://dx.doi.org/10.5281/zenodo.262697> ;
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dc:creator "Avendaño, Jorge Enrique; Barker, F. Keith; Cadena, Carlos Daniel" ;
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dc:title "Chlorospingus flavovirens" ;
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trt:publishedIn <http://dx.doi.org/10.11646/zootaxa.4136.2.7> ;
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trt:treatsTaxonName <http://taxon-name.plazi.org/id/Animalia/Chlorospingus_flavovirens> ;
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a trt:Treatment .
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<http://dx.doi.org/10.11646/zootaxa.4136.2.7>
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bibo:endPage "381" ;
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bibo:issue "2" ;
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bibo:journal "Zootaxa" ;
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bibo:startPage "373" ;
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bibo:volume "4136" ;
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dc:creator "Avendaño, Jorge Enrique; Barker, F. Keith; Cadena, Carlos Daniel" ;
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dc:date "2016" ;
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dc:title "The Yellow-green Bush-tanager is neither a bush-tanager nor a sparrow: Molecular phylogenetics reveals that Chlorospingus flavovirens is a tanager (Aves: Passeriformes; Thraupidae)" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.262695>, <http://dx.doi.org/10.5281/zenodo.262696>, <http://dx.doi.org/10.5281/zenodo.262697> ;
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a fabio:JournalArticle .
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<http://taxon-name.plazi.org/id/Animalia/Chlorospingus_flavovirens>
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dwc:class "Aves" ;
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dwc:family "Thraupidae" ;
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dwc:genus "Chlorospingus" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Passeriformes" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:species "flavovirens" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Chlorospingus> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Chlorospingus>
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dwc:genus "Chlorospingus" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Thraupidae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Thraupidae>
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dwc:family "Thraupidae" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Passeriformes> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Passeriformes>
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dwc:order "Passeriformes" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Aves> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Aves>
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dwc:class "Aves" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Chordata> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Chordata>
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dwc:phylum "Chordata" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia>
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dwc:kingdom "Animalia" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.262695>
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dc:description "FIGURE 1. Maximum clade credibility tree reconstructed in BEAST showing relationships of Chlorospingus flavovirens and representatives of six families of nine-primaried oscines, based on ATPase 6 & 8 genes. The phylogeny indicates that Chlorospingus flavovirens is more closely related to tanagers (Thraupidae) than to other Chlorospingus species (Emberizidae). For each node, the posterior probability from the BEAST analysis is given above the branch leading to that node, and the maximum likelihood value from the RAxML analysis is given below the branch. Nodes that lacked bootstrap support based on 1000 maximum-likelihood replicates are indicated by ‘‘ – ’’. Illustrations are from C. flavovirens and some selected Chlorospingus species (courtesy of Lynx Edicions; Handbook of the Birds of the World, Vol. 16, 2011). Numbers in front on taxon names correspond to sample ID (see Supplementary file)." ;
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fabio:hasRepresentation <https://zenodo.org/record/262695/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.262696>
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dc:description "FIGURE 2. Maximum clade credibility trees reconstructed in BEAST for the core tanagers (Thraupinae) based on ND 2 (A) and Cyt b (B) genes. While the ND 2 topology indicates that Chlorospingus flavovirens is closely related to Bangsia arcaei, the Cyt b topology points to C. flavovirens as sister to all Bangsia species, although this relationship is weakly supported. For each node, the posterior probability from the BEAST analysis is given above the branch leading to that node, and the maximum likelihood value from the RAxML analysis is given below the branch. Nodes that lacked bootstrap support based on 1000 maximum-likelihood replicates are indicated by ‘‘ – ’’. Numbers in front on taxon names correspond to sample ID (see Supplementary file)." ;
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fabio:hasRepresentation <https://zenodo.org/record/262696/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.262697>
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dc:description "FIGURE 3. Maximum clade credibility tree reconstructed in BEAST for the Core Tanagers (Thraupinae) based on concatenated ND 2 and Cyt b sequences. The phylogeny indicates that Chlorospingus flavovirens is nested within a clade of Bangsia species, and most closely related to Bangsia arcaei. For each node, the posterior probability from the BEAST analysis is given above the branch leading to that node, and the maximum likelihood value from the RAxML analysis is given below the branch. Nodes that lacked bootstrap support based on 1000 maximum-likelihood replicates are indicated by ‘‘ – ’’. Illustrations are from C. flavovirens and Bangsia species (courtesy of Lynx Edicions; Handbook of the birds of the world, Vol. 16, 2011). Numbers in front on taxon names correspond to sample ID (see Supplementary file)." ;
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fabio:hasRepresentation <https://zenodo.org/record/262697/files/figure.png> ;
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a fabio:Figure .
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