130 lines
11 KiB
Turtle
130 lines
11 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/0228D806FFA4FF8AFF7EFB66FE1F63D5>
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cito:cites <http://dx.doi.org/10.5281/zenodo.12538716>, <http://dx.doi.org/10.5281/zenodo.12538720>, <http://dx.doi.org/10.5281/zenodo.12538733>, <http://dx.doi.org/10.5281/zenodo.12538718>, <http://dx.doi.org/10.5281/zenodo.12538723>, <http://dx.doi.org/10.5281/zenodo.12538727>, <http://dx.doi.org/10.5281/zenodo.12538729> ;
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dc:creator "Van Wichelen, Jeroen; D’Hondt, Sofie; Claeys, Myriam; Vyverman, Wim; Berney, Cédric; Bass, David; Vanormelingen, Pieter" ;
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dc:title "Vannella" ;
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trt:augmentsTaxonConcept <http://taxon-concept.plazi.org/id/Protozoa/Vannella_Bovee_1965> ;
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trt:publishedIn <http://dx.doi.org/10.4467/16890027AP.16.007.4942> ;
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a trt:Treatment .
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<http://dx.doi.org/10.4467/16890027AP.16.007.4942>
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bibo:endPage "87" ;
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bibo:issue "2" ;
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bibo:journal "Acta Protozoologica" ;
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bibo:startPage "61" ;
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bibo:volume "55" ;
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dc:creator "Van Wichelen, Jeroen; D’Hondt, Sofie; Claeys, Myriam; Vyverman, Wim; Berney, Cédric; Bass, David; Vanormelingen, Pieter" ;
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dc:date "2016" ;
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dc:title "A Hotspot of Amoebae Diversity: 8 New Naked Amoebae Associated with the Planktonic Bloom-forming Cyanobacterium Microcystis" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.12538716>, <http://dx.doi.org/10.5281/zenodo.12538720>, <http://dx.doi.org/10.5281/zenodo.12538733>, <http://dx.doi.org/10.5281/zenodo.12538718>, <http://dx.doi.org/10.5281/zenodo.12538723>, <http://dx.doi.org/10.5281/zenodo.12538727>, <http://dx.doi.org/10.5281/zenodo.12538729> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Protozoa/Vannella_Bovee_1965>
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dwc:authority "Bovee, 1965" ;
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dwc:class "Discosea" ;
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dwc:family "Vannellidae" ;
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dwc:genus "Vannella" ;
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dwc:kingdom "Protozoa" ;
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dwc:order "Vannellida" ;
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dwc:phylum "Amoebozoa" ;
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dwc:rank "genus" ;
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dwc:scientificNameAuthorship "Bovee, 1965" ;
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rdfs:seeAlso <https://www.catalogueoflife.org/data/taxon/85VM> ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Protozoa/Vannella> ;
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a dwcFP:TaxonConcept .
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<http://taxon-name.plazi.org/id/Protozoa/Vannella>
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dwc:class "Discosea" ;
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dwc:family "Vannellidae" ;
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dwc:genus "Vannella" ;
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dwc:kingdom "Protozoa" ;
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dwc:order "Vannellida" ;
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dwc:phylum "Amoebozoa" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Protozoa/Vannellidae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Protozoa/Vannellidae>
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dwc:class "Discosea" ;
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dwc:family "Vannellidae" ;
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dwc:kingdom "Protozoa" ;
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dwc:order "Vannellida" ;
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dwc:phylum "Amoebozoa" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Protozoa/Vannellida> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Protozoa/Vannellida>
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dwc:class "Discosea" ;
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dwc:kingdom "Protozoa" ;
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dwc:order "Vannellida" ;
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dwc:phylum "Amoebozoa" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Protozoa/Discosea> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Protozoa/Discosea>
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dwc:class "Discosea" ;
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dwc:kingdom "Protozoa" ;
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dwc:phylum "Amoebozoa" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Protozoa/Amoebozoa> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Protozoa/Amoebozoa>
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dwc:kingdom "Protozoa" ;
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dwc:phylum "Amoebozoa" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Protozoa> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Protozoa>
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dwc:kingdom "Protozoa" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.12538716>
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dc:description "Fig. 1.A – 18S rDNA maximum likelihood phylogeny of Vannella, including Microcystis–associated strains (in bold). ML bootstrap values respectively posterior probabilities are shown at the nodes. GenBank accession numbers are given together with the species names. B – LM pictures of V. planctonica (strainsA2FBB: 2, 4, 5, 9–13 andA4P4ZHB:1, 3, 6–8) showing locomotive trophozoites (1–8), a grazing amoeba with a Microcystis cell inside a food vacuole (9), floating forms (10–11) and a cyst stage (12–13). C – LM pictures of V. simplex (strain A17WVB) showing the floating form (14), locomotive amoebae (15–18) with the presence of food vacuoles containing partly digested Microcystis cells (17), posteriorly adhered fecal pellets (15–16), a long flagellum-like pseudopodium encircling a Microcystis cell (17–18) and grazing amoebae on a colony of Microcystis aeruginosa with expanded (arrow) or contracted (arrowhead) flagellum-like pseudopodia visible in some of the trophozoites (19). The presence of a contracticle vacuole, a nucleus or a cyst opening is indicated by a black arrow, a black arrowhead or a white arrow respectively. Scale bars: 20 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/12538716/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.12538720>
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dc:description "Fig. 3. TEM pictures of the scales on the cell surface of Korotnevella jeppesenii (a, c) and K. pelagolacustris (b, d) trophozoites viewed from top (a, b) and side (c, d). Scale bars: 500 nm." ;
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fabio:hasRepresentation <https://zenodo.org/record/12538720/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.12538733>
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dc:description "Fig. 8. A – 18S rDNA maximum likelihood phylogeny of Angulamoeba. Sequences new for this study are indicated in bold. ML bootstrap values respectively posterior probabilities are shown at the nodes. GenBank accession numbers are given together with the species names. B – LM pictures of Angulamoeba microcystivorans (strains A1WVB (1, 2, 4) and A4WVB (3)) showing the characteristic rusty-colored plasmodium-like mucilage matrix with embedded trophozoites devouring a culture of Microcystis aeruginosa colonies (1–2), multi-vacuolated trophozoites that are seemingly connected by their filopodia (3) and amoeba-flagellates in different stages of transition (4). Scale bars: 200 µm (1), 100 µm (2), 20 µm (3, 4)." ;
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fabio:hasRepresentation <https://zenodo.org/record/12538733/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.12538718>
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dc:description "Fig. 2. A – 18S rDNA maximum likelihood phylogeny of Korotnevella, including Microcystis-associated strains (in bold). ML bootstrap values respectively posterior probabilities are shown at the nodes. GenBank accession numbers are given together with the species names. B – LM pictures of K. jeppesenii (strain A1JEPDK) showing trophozoites in non-oriented movement (1–5), during locomotion (6, 8) and during grazing on Microcystis aeruginosa cells (7) with the arrow indicating a lacuna-containing nucleolus. C – LM pictures of K. pelagolacustris (strains A8WVB (7, 12), A16WVB (6, 8, 11), A21WVB (1, 13), A54WVB (3–5) and A1LMS (2, 9, 10)) showing trophozoites in different stages of non-oriented movement (1–4, 6), the locomotive form (8–12), grazing amoebae with Microcystis cells inside food vacuoles (5, 10), the cyst stage (7) and the floating form (13).Arrows indicate the nucleus with clearly visible nucleolus (in 8, 10, 12). Scale bars: 20 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/12538718/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.12538723>
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dc:description "Fig. 4. A – 18S rDNA maximum likelihood phylogeny of the family Hartmannellidae, including Microcystis-associated strains of Copromyxa (in bold). ML bootstrap values respectively posterior probabilities are shown at the nodes. GenBank accession numbers are given together with the species names. B – LM pictures of C. microcystidis showing locomotive trophozoites (1–7, 10) containing a pronounced hyaline cap (white arrowheads), a vesicular nucleus with globular nucleolus (white arrows), big crystals (black arrows) and Microcystis cells inside food vacuoles (black arrowheads), non-oriented moving trophozoites (8–9, 11), a grazing amoeba capturing a Microcystis cell (12–14), the floating form (15) and a double-walled cyst stage (16). C – LM pictures of C. vandevyveri showing locomotive trophozoites (1, 6–9), trophozoites during non-oriented movement (2–5, 10–12) and floating forms (13–15). Black arrows indicate the presence of small, refractive crystals in the cytoplasm, the white arrow shows the vesicular nucleus with a globular lacuna-containing nucleolus, white arrowheads indicate a pronounced hyaline cap. Ingested Microcystis cells are visible in (9) and (11). Scale bars: 20 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/12538723/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.12538727>
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dc:description "Fig. 6. A – 18S rDNA maximum likelihood phylogeny of Vexillifera, including the Microcystis-associated strain (in bold). ML bootstrap values respectively posterior probabilities are shown at the nodes. GenBank accession numbers are given together with the species names. B – LM pictures of locomotive (1–7, 12–13) and floating (8–11) amoebae. Microcystis cells inside food vacuoles are visible in (1–2) and (13). The arrow in (5) points to a temporal, uroid-like structure sometimes visible during locomotion. Scale bars: 20 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/12538727/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.12538729>
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dc:description "Fig. 7. A – 18S rDNA maximum likelihood phylogeny of Cochliopodium, including the Microcystis-associated strain (in bold). ML bootstrap values respectively posterior probabilities are shown at the nodes. GenBank accession numbers are given together with the species names. B – LM pictures of locomotive amoebae clearly showing the surrounding hyaline sheet (black arrows) punctuated with microscales (best visible in 8), a few small subpseudopodia (black arrowheads) and trailing adhesive uroidal filaments (white arrows) (1–5), a tropho- zoite during and just after grazing on Microcystis cells showing a prominent fringe of folded hyaloplasm (white arrowheads) (6–9), the bell-shaped form on colonies of Microcystis aeruginosa (10–11) and floating amoebae (12–13). Scale bars: 20 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/12538729/files/figure.png> ;
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a fabio:Figure .
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