171 lines
15 KiB
Turtle
171 lines
15 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
|
||
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
|
||
@prefix bibo: <http://purl.org/ontology/bibo/> .
|
||
@prefix cito: <http://purl.org/spar/cito/> .
|
||
@prefix dc: <http://purl.org/dc/elements/1.1/> .
|
||
@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
|
||
@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
|
||
@prefix fabio: <http://purl.org/spar/fabio/> .
|
||
@prefix trt: <http://plazi.org/vocab/treatment#> .
|
||
@prefix xlink: <http://www.w3.org/1999/xlink/> .
|
||
|
||
<http://treatment.plazi.org/id/5C71301CFFB3FFD2FF02FE3BFEF8FC2F>
|
||
cito:cites <http://dx.doi.org/10.5281/zenodo.11552185>, <http://dx.doi.org/10.5281/zenodo.11552187>, <http://dx.doi.org/10.5281/zenodo.11552189>, <http://dx.doi.org/10.5281/zenodo.11552191>, <http://dx.doi.org/10.5281/zenodo.11552193>, <http://dx.doi.org/10.5281/zenodo.11552197> ;
|
||
dc:creator "Qin, Tao; Ortega-Perez, Paula; Wibbelt, Gudrun; Lakim, Maklarin B.; Ginting, Sulaiman; Khoprasert, Yuvaluk; Wells, Konstans; Hu, Junjie; Jäkel, Thomas" ;
|
||
dc:title "Sarcocystis muricoelognathis Qin & Ortega-Perez & Wibbelt & Lakim & Ginting & Khoprasert & Wells & Hu & Jäkel 2024, sp. nov." ;
|
||
dwc:basisOfRecord <http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB3FFD0FCB8FC7DFB64FC0F>, <http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB3FFD0FB40FC7AFBE3FC2F>, <http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB2FFD1FD18FE9BFD40FE6F>, <http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB2FFD1FF02FD5DFE97FC8F>, <http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB2FFD1FED4FCFAFDAEFC6F>, <http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB2FFD1FD80FC5AFEC6FBEF> ;
|
||
trt:definesTaxonConcept <http://taxon-concept.plazi.org/id/Chromista/Sarcocystis_muricoelognathis_Qin_2024> ;
|
||
trt:publishedIn <http://dx.doi.org/10.1186/s13071-024-06230-8> ;
|
||
a trt:Treatment .
|
||
|
||
<http://dx.doi.org/10.1186/s13071-024-06230-8>
|
||
bibo:endPage "19" ;
|
||
bibo:issue "1" ;
|
||
bibo:journal "Parasites & Vectors" ;
|
||
bibo:pubDate "2024-03-15" ;
|
||
bibo:series "135" ;
|
||
bibo:startPage "1" ;
|
||
bibo:volume "17" ;
|
||
dc:creator "Qin, Tao; Ortega-Perez, Paula; Wibbelt, Gudrun; Lakim, Maklarin B.; Ginting, Sulaiman; Khoprasert, Yuvaluk; Wells, Konstans; Hu, Junjie; Jäkel, Thomas" ;
|
||
dc:date "2024" ;
|
||
dc:title "A cyst-forming coccidian with large geographical range infecting forest and commensal rodents: Sarcocystis muricoelognathis sp. nov." ;
|
||
fabio:hasPart <http://dx.doi.org/10.5281/zenodo.11552185>, <http://dx.doi.org/10.5281/zenodo.11552187>, <http://dx.doi.org/10.5281/zenodo.11552189>, <http://dx.doi.org/10.5281/zenodo.11552191>, <http://dx.doi.org/10.5281/zenodo.11552193>, <http://dx.doi.org/10.5281/zenodo.11552197> ;
|
||
a fabio:JournalArticle .
|
||
|
||
<http://taxon-concept.plazi.org/id/Chromista/Sarcocystis_muricoelognathis_Qin_2024>
|
||
dwc:authority "Qin & Ortega-Perez & Wibbelt & Lakim & Ginting & Khoprasert & Wells & Hu & Jäkel, 2024" ;
|
||
dwc:authorityName "Qin & Ortega-Perez & Wibbelt & Lakim & Ginting & Khoprasert & Wells & Hu & Jäkel" ;
|
||
dwc:authorityYear "2024" ;
|
||
dwc:family "Sarcocystidae" ;
|
||
dwc:genus "Sarcocystis" ;
|
||
dwc:kingdom "Chromista" ;
|
||
dwc:order "Eucoccidiida" ;
|
||
dwc:phylum "Miozoa" ;
|
||
dwc:rank "species" ;
|
||
dwc:scientificNameAuthorship "Qin & Ortega-Perez & Wibbelt & Lakim & Ginting & Khoprasert & Wells & Hu & Jäkel, 2024" ;
|
||
dwc:species "muricoelognathis" ;
|
||
trt:hasTaxonName <http://taxon-name.plazi.org/id/Chromista/Sarcocystis_muricoelognathis> ;
|
||
a dwcFP:TaxonConcept .
|
||
|
||
<http://taxon-name.plazi.org/id/Chromista/Sarcocystis_muricoelognathis>
|
||
dwc:family "Sarcocystidae" ;
|
||
dwc:genus "Sarcocystis" ;
|
||
dwc:kingdom "Chromista" ;
|
||
dwc:order "Eucoccidiida" ;
|
||
dwc:phylum "Miozoa" ;
|
||
dwc:rank "species" ;
|
||
dwc:species "muricoelognathis" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Chromista/Sarcocystis> ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://taxon-name.plazi.org/id/Chromista/Sarcocystis>
|
||
dwc:family "Sarcocystidae" ;
|
||
dwc:genus "Sarcocystis" ;
|
||
dwc:kingdom "Chromista" ;
|
||
dwc:order "Eucoccidiida" ;
|
||
dwc:phylum "Miozoa" ;
|
||
dwc:rank "genus" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Chromista/Sarcocystidae> ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://taxon-name.plazi.org/id/Chromista/Sarcocystidae>
|
||
dwc:family "Sarcocystidae" ;
|
||
dwc:kingdom "Chromista" ;
|
||
dwc:order "Eucoccidiida" ;
|
||
dwc:phylum "Miozoa" ;
|
||
dwc:rank "family" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Chromista/Eucoccidiida> ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://taxon-name.plazi.org/id/Chromista/Eucoccidiida>
|
||
dwc:kingdom "Chromista" ;
|
||
dwc:order "Eucoccidiida" ;
|
||
dwc:phylum "Miozoa" ;
|
||
dwc:rank "order" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Chromista/Miozoa> ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://taxon-name.plazi.org/id/Chromista/Miozoa>
|
||
dwc:kingdom "Chromista" ;
|
||
dwc:phylum "Miozoa" ;
|
||
dwc:rank "phylum" ;
|
||
trt:hasParentName <http://taxon-name.plazi.org/id/Chromista> ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://taxon-name.plazi.org/id/Chromista>
|
||
dwc:kingdom "Chromista" ;
|
||
dwc:rank "kingdom" ;
|
||
a dwcFP:TaxonName .
|
||
|
||
<http://dx.doi.org/10.5281/zenodo.11552185>
|
||
dc:description "Fig. 1 a–f Light microscopic and ultrastructural morphology of sarcocysts of Sarcocystis sp. in SD rats 5 months after inoculation with sporocysts isolated from rat snakes in Thailand.a Typical sporocyst from a fecal sample of Coelognathus radiatus; sporocysts from C.flavolineatus were identical in size and appearance; asterisk indicates single sporozoite. b Live sarcocyst, freed from muscle tissue; note the broad, palisade-like villar protrusions that could at times resemble those of Sarcocystis singaporensis with which this species can co-occur; however, the protrusions lack the basal stalks typical for the former species; the arrow highlights the septated compartments in the interior of the sarcocyst, and the inset shows a micrograph of live cystozoites freshly released from a cyst (arrowheads). c Typical structure of a cyst wall protrusion (isolate from C.flavolineatus); the arrows point to the electron-dense, knob-like structures of the primary cyst wall, whereby the knobs could apparently fuse to form an electron-dense borderline in larger protrusions (inset: arrowhead); also note the electron-light, thin layer of ground substance (GS) underneath the protrusions.d Typical cystozoites of the new species, which contained only two rhoptries (arrowheads) among relatively few micronemes (asterisks); additionally, the cystozoites exhibited vesicle-like structures in the anterior third of the cell containing electron-light,reticulate matter (arrow); the inset shows such a vesicle-like compartment at higher magnification, which was apparently not bound by a membrane (white arrow) and often located near micronemes (white asterisk); dense granules were present but rarely observed. e Interior and cyst wall of a mature sarcocyst (isolate from C. radiatus); metrocytes (asterisks) exclusively divided by endodyogeny, producing only two cystozoites (CZ). f Full-length section through a 15-µm-long protrusion of the sarcocyst wall; note that larger protrusions often occurred close to the tips of a cyst and showed a base with folds. AP,apicoplast; MI, mitochondrion; NU, nucleus; PT,villar protrusions" ;
|
||
fabio:hasRepresentation <https://zenodo.org/record/11552185/files/figure.png> ;
|
||
a fabio:Figure .
|
||
|
||
<http://dx.doi.org/10.5281/zenodo.11552187>
|
||
dc:description "Fig. 2 Light microscopic and ultrastructural morphology of sarcocysts from Maxomys whiteheadi in Borneo (a–c) and wild Rattus norvegicus in China (d, e). Note, due to ethanol fixation some ultrastructural details of the samples from Borneo are poorly resolved. a Richardsen’s dye-stained 1.0-µm thin section through a mature sarcocyst showing the villar protrusions (PT) of the cyst wall and numerous relatively small cystozoites (CZ). b Same sample as before under the electron microscope; note the thin layer of ground substance underneath the protrusions. c Enlarged part of the interior of the sarcocyst showing cystozoites—although with limited resolution—that possess a pair of rhoptries each, which is characteristic for this Sarcocystis species (black and white arrows; compare with Fig. 1d). d Live sarcocyst isolated from striated muscle tissue of a wild Norway rat in China; the inset shows live cystozoites that were freshly released from a cyst.e Ultrastructure of the same sarcocyst as before; note that the villar protrusions are highly similar to the samples from Borneo and Thailand regarding size and shape (Fig. 1e); again, cystozoites only exhibit one pair of rhoptries (arrows) and relatively few micronemes" ;
|
||
fabio:hasRepresentation <https://zenodo.org/record/11552187/files/figure.png> ;
|
||
a fabio:Figure .
|
||
|
||
<http://dx.doi.org/10.5281/zenodo.11552189>
|
||
dc:description "Fig. 3 Graph showing the size of sporocysts (length plotted against diameter, in μm; error bars indicate s.e.) of the Sarcocystis isolates from the colubrid snakes Coelognathus flavolineatus and C. radiatus in Thailand and closely related Sarcocystis. Every isolate/ species is indicated by a different symbol (legend), whereby sporocyst samples with the same shape index (=length/diameter) share the same background shading: white= 1.3; dark= 1.5; Sarcocystis pantherophisi =1.2. Here, S.pantherophisi is included as reference for the snake host Sarcocystis lineage S2,while all other species belong to lineage S1 (except for S. murinotechis, for which no genetic information is available)" ;
|
||
fabio:hasRepresentation <https://zenodo.org/record/11552189/files/figure.png> ;
|
||
a fabio:Figure .
|
||
|
||
<http://dx.doi.org/10.5281/zenodo.11552191>
|
||
dc:description "Fig. 4 Two separate phylogenies of the 28S rRNA gene (longer and shorter sequence fragments) of the new Sarcocystis sp. sampled in China, newly sequenced S. zuoi from China and novel Sarcocystis isolates from Borneo. Symbols indicate the new sequences of this study, whereby taxa considered conspecific are grouped by shape. GenBank accession numbers are given behind each taxon name. a Maximum likelihood (ML) analysis of an alignment of 29 sequences and 1383 homologous positions. Branch support by bootstrapping (1000 replicate trees) is shown next to the branches, whereby the results of three independent analyses based on independent alignments are shown.The scale bar indicates the number of substitutions per site. All positions with <85% site coverage were eliminated, i.e. fewer than 15% alignment gaps, missing data and ambiguous bases were allowed at any position (partial deletion option). Selected eimeriid coccidia served as outgroup. b ML analysis of a trimmed alignment including five shorter sequences of Sarcocystis sampled in Borneo compared with the samples of Sarcocystis sp. from China; a total of 16 sequences and 366 homologous positions with site coverage of 95% were compared. Sarcocystis pantherophisi served as outgroup.The corresponding natural intermediate hosts are also indicated" ;
|
||
fabio:hasRepresentation <https://zenodo.org/record/11552191/files/figure.png> ;
|
||
a fabio:Figure .
|
||
|
||
<http://dx.doi.org/10.5281/zenodo.11552193>
|
||
dc:description "Fig. 5 Phylogenetic reconstruction of the 18S rRNA gene tree of the novel Sarcocystis species and other tissue cyst-forming coccidia based on 1465 homologous positions of 40 aligned nucleotide sequences under the minimum evolution (ME) criterion; selected eimeriid coccidia served as outgroup.The new sequences of Sarcocystis sp. from China are highlighted by black symbols. Branch support values are shown for 1000 bootstrap replicates of three independent alignments with a site coverage of 95%.The shaded box highlights the taxa included in the so-called S. zuoi complex" ;
|
||
fabio:hasRepresentation <https://zenodo.org/record/11552193/files/figure.png> ;
|
||
a fabio:Figure .
|
||
|
||
<http://dx.doi.org/10.5281/zenodo.11552197>
|
||
dc:description "Fig. 6 ML analysis of the ITS1 region of Sarcocystis sp., S.zuoi and other species of the Sarcocystidae; members of the Toxoplasmatinae served as outgroup. Bootstrap branch support values are shown in triplicate, indicating results from three independent alignments and analyses.The tree is drawn to scale, with branch lengths measured in the number of substitutions per site.The analysis involved 204 homologous positions of 33 nucleotide sequences" ;
|
||
fabio:hasRepresentation <https://zenodo.org/record/11552197/files/figure.png> ;
|
||
a fabio:Figure .
|
||
|
||
<http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB3FFD0FCB8FC7DFB64FC0F>
|
||
dwc:locality "Bangkok" ;
|
||
dwc:typeStatus "holotype" ;
|
||
trt:gbifOccurrenceId "4899300305" ;
|
||
trt:httpUri <https://treatment.plazi.org/id/5C71301CFFB3FFD2FF02FE3BFEF8FC2F#64B08B57FFB3FFD0FCB8FC7DFB64FC0F> ;
|
||
a dwc:MaterialCitation .
|
||
|
||
<http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB3FFD0FB40FC7AFBE3FC2F>
|
||
dwc:locality "Chumphon" ;
|
||
dwc:typeStatus "holotype" ;
|
||
trt:gbifOccurrenceId "4899300301" ;
|
||
trt:httpUri <https://treatment.plazi.org/id/5C71301CFFB3FFD2FF02FE3BFEF8FC2F#64B08B57FFB3FFD0FB40FC7AFBE3FC2F> ;
|
||
a dwc:MaterialCitation .
|
||
|
||
<http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB2FFD1FD18FE9BFD40FE6F>
|
||
dwc:locality "Sarcocysts" ;
|
||
dwc:typeStatus "holotype" ;
|
||
trt:gbifOccurrenceId "4899300302" ;
|
||
trt:httpUri <https://treatment.plazi.org/id/5C71301CFFB3FFD2FF02FE3BFEF8FC2F#64B08B57FFB2FFD1FD18FE9BFD40FE6F> ;
|
||
a dwc:MaterialCitation .
|
||
|
||
<http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB2FFD1FF02FD5DFE97FC8F>
|
||
dwc:locality "University of Hohenheim" ;
|
||
dwc:typeStatus "holotype" ;
|
||
trt:gbifOccurrenceId "4899300306" ;
|
||
trt:httpUri <https://treatment.plazi.org/id/5C71301CFFB3FFD2FF02FE3BFEF8FC2F#64B08B57FFB2FFD1FF02FD5DFE97FC8F> ;
|
||
a dwc:MaterialCitation .
|
||
|
||
<http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB2FFD1FED4FCFAFDAEFC6F>
|
||
dwc:locality "University of Hohenheim" ;
|
||
dwc:typeStatus "holotype" ;
|
||
trt:gbifOccurrenceId "4899300304" ;
|
||
trt:httpUri <https://treatment.plazi.org/id/5C71301CFFB3FFD2FF02FE3BFEF8FC2F#64B08B57FFB2FFD1FED4FCFAFDAEFC6F> ;
|
||
a dwc:MaterialCitation .
|
||
|
||
<http://tb.plazi.org/GgServer/dwcaRecords/5C71301CFFB3FFD2FF02FE3BFEF8FC2F.mc.64B08B57FFB2FFD1FD80FC5AFEC6FBEF>
|
||
dwc:locality "University of Hohenheim" ;
|
||
dwc:typeStatus "holotype" ;
|
||
trt:gbifOccurrenceId "4899300303" ;
|
||
trt:httpUri <https://treatment.plazi.org/id/5C71301CFFB3FFD2FF02FE3BFEF8FC2F#64B08B57FFB2FFD1FD80FC5AFEC6FBEF> ;
|
||
a dwc:MaterialCitation .
|