264 lines
17 KiB
Turtle
264 lines
17 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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<http://treatment.plazi.org/id/038A87FDFFDDFFD361C32626FCA1C4A4>
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cito:cites <http://dx.doi.org/10.5281/zenodo.206844>, <http://dx.doi.org/10.5281/zenodo.206845>, <http://dx.doi.org/10.5281/zenodo.206846>, <http://dx.doi.org/10.5281/zenodo.206847>, <http://dx.doi.org/10.5281/zenodo.206848>, <http://dx.doi.org/10.5281/zenodo.206849>, <http://dx.doi.org/10.5281/zenodo.206850>, <http://dx.doi.org/10.5281/zenodo.206851>, <http://dx.doi.org/10.5281/zenodo.206852>, <http://dx.doi.org/10.5281/zenodo.206853>, <http://dx.doi.org/10.5281/zenodo.206854>, <http://dx.doi.org/10.5281/zenodo.206855>, <http://dx.doi.org/10.5281/zenodo.206856>, <http://dx.doi.org/10.5281/zenodo.206843>, <http://taxon-concept.plazi.org/id/Plantae/Fucus_serratus_Ascophyllum_> ;
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dc:creator "Ereskovsky, Alexander V.; Lavrov, Dennis V.; Boury-Esnault, Nicole; Vacelet, Jean" ;
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dc:title "Halisarca dujardini" ;
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trt:citesTaxonName <http://taxon-name.plazi.org/id/Animalia/Chondrilla_nucula>, <http://taxon-name.plazi.org/id/Animalia/Chondrosida>, <http://taxon-name.plazi.org/id/Animalia/Halisarca>, <http://taxon-name.plazi.org/id/Animalia/Halisarca_harmelini>, <http://taxon-name.plazi.org/id/Animalia/Ircinia_situ>, <http://taxon-name.plazi.org/id/Animalia/Laminaria_saccharina>, <http://taxon-name.plazi.org/id/Animalia/Smittina_cervicornis>, <http://taxon-name.plazi.org/id/Animalia/Styela_rustica>, <http://taxon-name.plazi.org/id/Plantae/Fucus_ramosus>, <http://taxon-name.plazi.org/id/Plantae/Fucus_vesiculosus> ;
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trt:deprecates <http://taxon-concept.plazi.org/id/Animalia/Halisarca_dujardini_Johnston_1842>, <http://taxon-concept.plazi.org/id/Animalia/Halisarca_sputum_Topsent_1893>, <http://taxon-concept.plazi.org/id/Animalia/Hymeniacidon_dujardini_Bowerbank_1866> ;
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trt:publishedIn <http://dx.doi.org/10.5281/zenodo.206842> ;
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trt:treatsTaxonName <http://taxon-name.plazi.org/id/Animalia/Halisarca_dujardini> ;
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a trt:Treatment .
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<http://dx.doi.org/10.5281/zenodo.206842>
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bibo:endPage "31" ;
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bibo:journal "Zootaxa" ;
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bibo:startPage "5" ;
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bibo:volume "2768" ;
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dc:creator "Ereskovsky, Alexander V.; Lavrov, Dennis V.; Boury-Esnault, Nicole; Vacelet, Jean" ;
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dc:date "2011" ;
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dc:title "Molecular and morphological description of a new species of Halisarca (Demospongiae: Halisarcida) from Mediterranean Sea and a redescription of the type species Halisarca dujardini" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.206844>, <http://dx.doi.org/10.5281/zenodo.206845>, <http://dx.doi.org/10.5281/zenodo.206846>, <http://dx.doi.org/10.5281/zenodo.206847>, <http://dx.doi.org/10.5281/zenodo.206848>, <http://dx.doi.org/10.5281/zenodo.206849>, <http://dx.doi.org/10.5281/zenodo.206850>, <http://dx.doi.org/10.5281/zenodo.206851>, <http://dx.doi.org/10.5281/zenodo.206852>, <http://dx.doi.org/10.5281/zenodo.206853>, <http://dx.doi.org/10.5281/zenodo.206854>, <http://dx.doi.org/10.5281/zenodo.206855>, <http://dx.doi.org/10.5281/zenodo.206856>, <http://dx.doi.org/10.5281/zenodo.206843> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Animalia/Halisarca_dujardini_Johnston_1842>
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dwc:authority "Johnston, 1842", "Johnston, 1842: 192" ;
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dwc:authorityName "Johnston" ;
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dwc:authorityPageNumber "192" ;
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dwc:authorityYear "1842" ;
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dwc:class "Demospongiae" ;
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dwc:family "Halisarcidae" ;
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dwc:genus "Halisarca" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Chondrosida" ;
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dwc:phylum "Porifera" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Johnston, 1842" ;
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dwc:species "dujardini" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Halisarca_dujardini> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Animalia/Hymeniacidon_dujardini_Bowerbank_1866>
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dwc:authority "Bowerbank 1866: 224" ;
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dwc:authorityName "Bowerbank" ;
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dwc:authorityPageNumber "224" ;
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dwc:authorityYear "1866" ;
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dwc:class "Demospongiae" ;
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dwc:family "Halichondriidae" ;
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dwc:genus "Hymeniacidon" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Halichondrida" ;
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dwc:phylum "Porifera" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Bowerbank, 1866" ;
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dwc:species "dujardini" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Hymeniacidon_dujardini> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Animalia/Halisarca_sputum_Topsent_1893>
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dwc:authority "Topsent 1893: 38" ;
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dwc:authorityName "Topsent" ;
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dwc:authorityPageNumber "38" ;
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dwc:authorityYear "1893" ;
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dwc:class "Demospongiae" ;
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dwc:family "Halisarcidae" ;
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dwc:genus "Halisarca" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Chondrosida" ;
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dwc:phylum "Porifera" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Topsent, 1893" ;
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dwc:species "sputum" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Halisarca_sputum> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Plantae/Fucus_serratus_Ascophyllum_>
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dwc:authority "Ascophyllum" ;
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dwc:authorityName "Ascophyllum" ;
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dwc:class "Phaeophyceae" ;
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dwc:family "Fucaceae" ;
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dwc:genus "Fucus" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Fucales" ;
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dwc:phylum "Heterokontophyta" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Ascophyllum" ;
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dwc:species "serratus" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Plantae/Fucus_serratus> ;
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a dwcFP:TaxonConcept .
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<http://taxon-name.plazi.org/id/Animalia/Halisarca_dujardini>
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dwc:class "Demospongiae" ;
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dwc:family "Halisarcidae" ;
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dwc:genus "Halisarca" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Chondrosida" ;
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dwc:phylum "Porifera" ;
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dwc:rank "species" ;
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dwc:species "dujardini" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Halisarca> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Halisarca>
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dwc:class "Demospongiae" ;
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dwc:family "Halisarcidae" ;
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dwc:genus "Halisarca" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Chondrosida" ;
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dwc:phylum "Porifera" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Halisarcidae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Halisarcidae>
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dwc:family "Halisarcidae" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Chondrosida> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Chondrosida>
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dwc:class "Demospongiae" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Chondrosida" ;
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dwc:phylum "Porifera" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Demospongiae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Demospongiae>
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dwc:class "Demospongiae" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Porifera> ;
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a dwcFP:TaxonName .
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||
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<http://taxon-name.plazi.org/id/Animalia/Porifera>
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dwc:phylum "Porifera" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia>
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dwc:kingdom "Animalia" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Hymeniacidon_dujardini>
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dwc:class "Demospongiae" ;
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dwc:family "Halichondriidae" ;
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dwc:genus "Hymeniacidon" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Halichondrida" ;
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dwc:phylum "Porifera" ;
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dwc:rank "species" ;
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dwc:species "dujardini" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Hymeniacidon> ;
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a dwcFP:TaxonName .
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||
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<http://taxon-name.plazi.org/id/Animalia/Hymeniacidon>
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dwc:genus "Hymeniacidon" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Halichondriidae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Halichondriidae>
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dwc:family "Halichondriidae" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Halichondrida> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Halichondrida>
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dwc:order "Halichondrida" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Demospongiae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Halisarca_sputum>
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dwc:class "Demospongiae" ;
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dwc:family "Halisarcidae" ;
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dwc:genus "Halisarca" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Chondrosida" ;
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dwc:phylum "Porifera" ;
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dwc:rank "species" ;
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dwc:species "sputum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Halisarca> ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.206844>
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dc:description "FIGURES 2 – 5. Halisarca dujardini. In situ and in vivo photos of non reproductive sponge from Bering Sea (Fig. 2) and reproductive sponge (arrows indicated embryos) from White Sea (Fig. 3) sponges. Histological section of non-reproductive sponge (Fig. 4) and reproductive (Fig. 5) sponge. Abbreviations: Bc—blastocoel; CC—choanocyte chambers; CE—cleaving embryos; Ex—exopinacoderm; M—mesohyle. Scale bars: 2 – 10 mm; 3 – 5 mm; 4 – 650 µm; 5 – 150 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/206844/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206845>
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dc:description "FIGURE 6. Scheme of the ectosomal region (modified from Bergquist 1996). 1 — the upper layer; 2 — the middle layer; 3 — the inner layer. Abbreviation: ex—exopinacocytes." ;
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fabio:hasRepresentation <https://zenodo.org/record/206845/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206846>
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dc:description "FIGURES 7 – 15. Halisarca dujardini. Ultrastructure of epithelial cells. TEM of choanocyte chamber of sponge from Barents Sea (Fig. 7); SEM of choanocytes of sponge from White Sea (Fig. 8); TEM (Fig. 9) and SEM (Figs. 10, 11) of exopinacocytes of sponges from White Sea; TEM (Fig. 12) and SEM (Fig. 13) of endopinacocytes of sponges from Japan (12) and White (13) Seas; TEM (Fig. 14) and SEM (Fig. 15) of basopinacocytes of sponges from Barents (14) and White (15) Seas. Abbreviations: B—symbiotic bacteria; Bp—basopinacocytes; C—external cuticle; CB—cytoplasmic bridge; CS—periflagellar cytoplasmic sleeve; EC—external cytoplasmic part; Enp—endopinacocyte; Exp—exopinacocytes; F—flagellum; Mv—microvilli; Nnucleus; Ph—phagosomes. Scale bars: 7 — 7 µm; 8 — 2 µm; 9 — 3 µm; 10 — 2 µm; 11 — 7 µm; 12 — 3 µm; 13 — 7 µm; 14 — 1.5 µm; 15 — 10 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/206846/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206847>
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dc:description "FIGURES 16 – 19. Halisarca dujardini. Ultrastructure of mesohylar cells. TEM of nucleolated amoebocytes (archaeocytes) from Barents (16) and Japan (17) Seas; TEM of lophocytes from Barents Sea (18) and SEM of lophocyte from White Sea (19). Abbreviations: B—symbiotic bacteria; L—lophocyte; N—nucleus; Nu—nucleolus; Ph—phagosomes. Ps—pseudopodia. Scale bars: 16 — 2 µm; 17 — 2 µm; 18 — 1.5 µm; 19 — 7 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/206847/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206848>
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dc:description "FIGURE 20. Halisarca dujardini. Comparative TEM micrographs of mesohylar cells with inclusions and symbiotic bacteria of Halisarca dujardini from different seas. Abbreviations: G—granules; N—nucleus; Ph—phagosomes; S—spherulous inclusions; V—vacuoles." ;
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fabio:hasRepresentation <https://zenodo.org/record/206848/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206849>
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dc:description "FIGURES 21 – 23. Halisarca dujardini. TEM of additional temporary mesohylar cell. Nutritive cells (21); macrophages (22); special eosinophilic granular cells (23). Abbreviations: G—granules; N—nucleus; Nu—nucleolus; Ph—phagosomes. V—vacuoles. Scale bars: 21 — 2.5 µm; 22 — 15 µm; 23 — 3 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/206849/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206850>
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dc:description "FIGURE 24. Geographical records of Halisarca dujardini in World Ocean (red drops)." ;
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fabio:hasRepresentation <https://zenodo.org/record/206850/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206851>
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dc:description "FIGURES 25, 26. Halisarca harmelini sp. nov. in situ and in vivo (arrowheads) (photos J. Harmelin). Abbreviations: Ooscula; Z—bryozoan zooids. Scale bars: 25 — 10 mm; 26 — 3 mm." ;
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fabio:hasRepresentation <https://zenodo.org/record/206851/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206852>
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dc:description "FIGURE 27 – 29. Anatomy of Halisarca harmelini sp. nov. 27 — General view (semi-thin section); 28 – choanocyte chamber (TEM); 29 — basal part (TEM). Abbreviations: Ar, archaeocyte; B 2, bacteria type 2; C, cuticle; CC, choanocyte chambers; Ch, choanocytes; SC, spherulous cell; VC, vacuolar cell. Scale bars: 27 — 100 µm; 28 — 10 µm; 29 — 5 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/206852/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206853>
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dc:description "FIGURES 30 – 35. TEM micrographs of the cells of Halisarca harmelini sp. nov. 30 — exopinacocyte; 31 — choanocytes; 32 — endopinacocyte; 33 — basopinacocyte; 34 — nucleolate amoebocyte; 35 — lophocyte. Abbreviations: B 1 — bacteria type 1; Ccuticle; CB—cytoplasmic bridge; EC—external cytoplasmic part; F—flagellum; Mv—microvilli; N—nucleus; T—cell’s “ tail ”. Scale bars: 30 – 2.5 µm; 31 — 2 µm; 32 — 2.5 µm; 33 — 2 µm; 34 — 1 µm; 35 — 2 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/206853/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206854>
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dc:description "FIGURES 36 – 43. Micrographs of secretive cells (36 – 40) and symbiotic bacteria (41 – 43) of Halisarca harmelini sp. nov. 36 — Spherulous cell; 37 — Vacuolar cell; 38 — Microgranular cell; 39 — Granular cell; 40 — Rhabdiferous cell; 41, 42 — Symbiotic bacteria Type B 1; 43 — Symbiotic bacteria Type B 2. Abbreviations: B 1 — symbiotic bacteria type 1; G—granules; GC—Golgi complex; N—nucleus; R—rhabdite-like inclusions; S—spherule; V—vacuole. Scale bars: 36 — 3 µm; 37 — 7 µm; 38 — 2 µm; 39 — 1. 5 µm; 40 — 2 µm; 41 — 0. 5 µm; 42 — 1 µm; 43 — 0. 5 µm." ;
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fabio:hasRepresentation <https://zenodo.org/record/206854/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206855>
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dc:description "FIGURE 45. Cox 1 divergence between Halisarca harmelini and Halisarca dujardini in comparison to cox 1 polymorphism within Chondrilla nucula. Neighbor-joining tree was computed using uncorrected “ p ” distances for nucleotide data." ;
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fabio:hasRepresentation <https://zenodo.org/record/206855/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206856>
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dc:description "FIGURE 46. Phylogenetic position of Halisarca harmelini in demosponge phylogeny. Posterior majority-rule consensus tree obtained from the analysis of 3411 aligned amino acid positions from 33 taxa under the CAT + GTR + Γ model is shown. Phylogenetic analysis was conducted with the PhyloBayes 2.3 d program with four independent chains running in parallel until convergence (maxdiff = 0.06). The numbers at each node are Bayesian posterior probabilities. Fungi, Homoscleromorpha, and major clades of demosponges are collapsed for clarity. The two species of Halisarca are in bold. The complete tree is shown as supplementary data." ;
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fabio:hasRepresentation <https://zenodo.org/record/206856/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.206843>
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dc:description "FIGURE 1. a—Geographical distribution of Halisarca harmelini sp. nov. in Mediterranean Sea (red dots); b—Map of the Northwest Mediterranean coast showing the site of collection of holotype, paratype and specimens of Halisarca harmelini sp. nov. for ultrastructural and the total DNA extraction." ;
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fabio:hasRepresentation <https://zenodo.org/record/206843/files/figure.png> ;
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a fabio:Figure .
|