104 lines
6 KiB
Turtle
104 lines
6 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/038E87B0CA4AFFE5FF9CFAC9FAC70DF2>
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cito:cites <http://dx.doi.org/10.5281/zenodo.8290688>, <http://dx.doi.org/10.5281/zenodo.8290690> ;
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dc:creator "Mehmood, Nasir; Yuan, Yuan; Ali, Mohammed; Ali, Muhammad; Iftikhar, Junaid; Cheng, Chunzhen; Lyu, Meiling; Wu, Binghua" ;
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dc:title "Fragaria nilgerrensis subsp. leaf" ;
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trt:publishedIn <http://dx.doi.org/10.1016/j.phytochem.2020.112590> ;
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trt:treatsTaxonName <http://taxon-name.plazi.org/id/Plantae/Fragaria_nilgerrensis> ;
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a trt:Treatment .
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<http://dx.doi.org/10.1016/j.phytochem.2020.112590>
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bibo:endPage "12" ;
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bibo:journal "Phytochemistry" ;
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bibo:pubDate "2021-01-31" ;
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bibo:series "112590" ;
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bibo:startPage "1" ;
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bibo:volume "181" ;
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dc:creator "Mehmood, Nasir; Yuan, Yuan; Ali, Mohammed; Ali, Muhammad; Iftikhar, Junaid; Cheng, Chunzhen; Lyu, Meiling; Wu, Binghua" ;
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dc:date "2021" ;
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dc:title "Early transcriptional response of terpenoid metabolism to Colletotrichum gloeosporioides in a resistant wild strawberry Fragaria nilgerrensis" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.8290688>, <http://dx.doi.org/10.5281/zenodo.8290690> ;
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a fabio:JournalArticle .
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<http://taxon-name.plazi.org/id/Plantae/Fragaria_nilgerrensis>
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dwc:class "Magnoliopsida" ;
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dwc:family "Rosaceae" ;
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dwc:genus "Fragaria" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Rosales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "species" ;
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dwc:species "nilgerrensis" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Fragaria> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Fragaria>
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dwc:class "Magnoliopsida" ;
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dwc:family "Rosaceae" ;
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dwc:genus "Fragaria" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Rosales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Rosaceae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Rosaceae>
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dwc:class "Magnoliopsida" ;
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dwc:family "Rosaceae" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Rosales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Rosales> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Rosales>
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dwc:class "Magnoliopsida" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Rosales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Magnoliopsida> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Magnoliopsida>
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dwc:class "Magnoliopsida" ;
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dwc:kingdom "Plantae" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Tracheophyta> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Tracheophyta>
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dwc:kingdom "Plantae" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae>
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dwc:kingdom "Plantae" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.8290688>
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dc:description "Fig. 4. Schematic illustration of general terpenoid biosynthesis pathways showing identified unigenes from F. nilgerrensis leaf transcriptome data. The interconvertible precursors IPP and DMAPP, two phosphorylated C5 unites, are produced by the MVA and MEP pathways which are exchangeable from both compartmentations. The chloroplast is a major site for synthesis of hemiterpene (C5), monoterpenoids (C10), diterpenoids (C20) carotenoids (C40) and chlorophyll, while the cytosol and other organelle are responsible for synthesis of monoterpenoids (C10), sesquiterpene (C15) and triterpene (C30). But that is not strictly conclusive. Arrow with lines indicate reactions catalyzed by enzymes and the encoding genes, with unigenes identified in this experiment boxed. The color highlights are for better visualization. Abbreviations: AACT, acetoacetyl-CoA thiolase; CMK, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; DXR, 1-deoxy-D-xylulose 5-phosphate reductase; DXS, 1-deoxy-D-xylulose 5-phosphate synthase; HDR, (E)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase; HDS, (E)-4-hydroxy-3- methyl-but-2-enyl diphosphate synthase; HMGR, 3-hydroxy-3-methylglutaryl-CoA reductase; HMGS, 3-hydroxy-3-methylglutaryl-CoA synthase; IDI, isopentenyl diphosphate isomerase; MCT, MEP cytidyltransferase; MDC, mevalonate-5-diphosphate decarboxylase; MDS, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; MVK, mevalonate kinase. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)" ;
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fabio:hasRepresentation <https://zenodo.org/record/8290688/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8290690>
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dc:description "Fig. 5. Heat maps depicting the transcript levels of terpenoid biosynthesis genes from F. nilgerrensis leaf transcriptome in response to C. gloeosporioides. (A) Fifty-six MVA and MEP pathway-associated genes. Annotation of the unigenes by homologous are listed in Table S4. (B) Fifty-nine terpene synthase-like or related genes. Annotation of the unigenes by homologous are listed in Table S5. Average FPKM (n = 2) were log2 transformed. The heatmap was generated by Prism GraphPad version 7.04." ;
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fabio:hasRepresentation <https://zenodo.org/record/8290690/files/figure.png> ;
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a fabio:Figure .
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